Wall clock time and date at job start Tue Mar 31 2020 05:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47731 * 2 1 4 4 C 1.50708 * 109.47157 * 239.99693 * 2 1 3 5 5 C 1.38253 * 120.00003 * 287.64732 * 4 2 1 6 6 C 1.38210 * 119.99756 * 179.76316 * 5 4 2 7 7 C 1.38252 * 120.00117 * 0.50288 * 6 5 4 8 8 C 1.38215 * 120.00027 * 359.74812 * 7 6 5 9 9 C 1.50704 * 120.00385 * 179.97438 * 8 7 6 10 10 F 1.39899 * 109.47008 * 270.02773 * 9 8 7 11 11 F 1.39905 * 109.46613 * 30.02019 * 9 8 7 12 12 F 1.39898 * 109.46995 * 150.02105 * 9 8 7 13 13 C 1.38213 * 119.99445 * 107.91188 * 4 2 1 14 14 N 1.46902 * 109.47265 * 120.00255 * 2 1 3 15 15 C 1.46902 * 111.00190 * 167.03470 * 14 2 1 16 16 C 1.50704 * 109.46903 * 196.51799 * 15 14 2 17 17 O 1.21277 * 119.99863 * 356.22605 * 16 15 14 18 18 N 1.34771 * 119.99718 * 175.94157 * 16 15 14 19 19 C 1.46499 * 120.00405 * 180.27894 * 18 16 15 20 20 C 1.50692 * 109.47579 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00266 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00134 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00028 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00364 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46713 * 90.00029 * 24 22 20 26 26 H 1.48501 * 109.47365 * 210.00086 * 24 22 20 27 27 H 1.48502 * 109.46693 * 330.00455 * 24 22 20 28 28 C 1.46897 * 110.99819 * 290.98843 * 14 2 1 29 29 C 1.52998 * 117.50182 * 356.28196 * 28 14 2 30 30 C 1.53000 * 117.50029 * 287.62308 * 28 14 2 31 31 H 1.08993 * 109.47258 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46792 * 299.99955 * 1 2 3 33 33 H 1.08999 * 109.47421 * 59.99578 * 1 2 3 34 34 H 1.07998 * 120.00191 * 359.97438 * 5 4 2 35 35 H 1.08009 * 119.99911 * 180.22883 * 6 5 4 36 36 H 1.07996 * 120.00094 * 179.72049 * 7 6 5 37 37 H 1.07992 * 120.00332 * 0.02562 * 13 4 2 38 38 H 1.08997 * 109.47050 * 76.52330 * 15 14 2 39 39 H 1.08991 * 109.47294 * 316.52153 * 15 14 2 40 40 H 0.97005 * 120.00041 * 0.28026 * 18 16 15 41 41 H 1.09008 * 109.46930 * 300.00626 * 19 18 16 42 42 H 1.09005 * 109.47014 * 59.99812 * 19 18 16 43 43 H 0.97001 * 120.00123 * 179.97438 * 23 22 20 44 44 H 1.09000 * 115.55368 * 141.94787 * 28 14 2 45 45 H 1.09004 * 117.49782 * 359.97438 * 29 28 14 46 46 H 1.08999 * 117.50556 * 145.01851 * 29 28 14 47 47 H 1.09008 * 117.50056 * 214.98133 * 30 28 14 48 48 H 1.08995 * 117.49827 * 359.97438 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.9205 -2.0850 -1.3291 6 6 2.3768 -2.7360 -2.4597 7 6 2.9544 -2.0139 -3.4875 8 6 3.0709 -0.6404 -3.3866 9 6 3.7011 0.1468 -4.5066 10 9 5.0791 0.2479 -4.2877 11 9 3.4688 -0.5049 -5.7227 12 9 3.1402 1.4277 -4.5494 13 6 2.6097 0.0115 -2.2579 14 7 2.0197 -0.6925 1.1994 15 6 3.4552 -0.9844 1.0896 16 6 3.8360 -2.0243 2.1118 17 8 3.0102 -2.4274 2.9033 18 7 5.0926 -2.5103 2.1427 19 6 5.4613 -3.5256 3.1324 20 6 6.9111 -3.8964 2.9556 21 1 7.4994 -3.4229 2.1835 22 6 7.4870 -4.8395 3.7801 23 7 6.7709 -5.4158 4.7207 24 14 9.2841 -5.2997 3.5606 25 1 10.1285 -4.4121 4.3999 26 1 9.4875 -6.7117 3.9733 27 1 9.6649 -5.1411 2.1340 28 6 1.7320 0.0863 2.4113 29 6 1.0858 1.4613 2.2306 30 6 2.5546 1.3544 2.6479 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.4736 -2.6496 -0.5243 35 1 2.2861 -3.8094 -2.5384 36 1 3.3150 -2.5231 -4.3689 37 1 2.7013 1.0846 -2.1788 38 1 4.0259 -0.0732 1.2683 39 1 3.6742 -1.3601 0.0902 40 1 5.7530 -2.1879 1.5096 41 1 5.3081 -3.1276 4.1356 42 1 4.8400 -4.4105 2.9938 43 1 7.1759 -6.0795 5.3006 44 1 1.4411 -0.4954 3.2860 45 1 0.8745 1.7882 1.2125 46 1 0.3701 1.7843 2.9866 47 1 2.8047 1.6072 3.6783 48 1 3.3095 1.6106 1.9046 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054396509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:28 Heat of formation + Delta-G solvation = -117.918904 kcal Electronic energy + Delta-G solvation = -34358.437531 eV Core-core repulsion = 29385.761199 eV Total energy + Delta-G solvation = -4972.676332 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 370.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.41428 -47.94273 -47.86512 -40.73670 -39.11045 -38.05455 -34.69910 -34.11830 -32.34414 -32.07703 -31.90220 -30.11287 -27.77284 -26.31086 -25.66625 -24.25121 -22.70463 -22.57497 -22.32594 -21.63105 -19.92857 -19.37310 -18.73750 -18.63785 -18.12573 -17.13516 -17.03153 -16.46991 -16.02336 -15.52954 -15.20434 -14.97402 -14.83449 -14.75721 -14.72012 -14.42516 -14.34020 -14.29915 -14.13401 -14.03689 -13.98798 -13.59735 -13.37310 -12.93981 -12.85288 -12.73026 -12.46562 -12.25339 -12.06752 -11.90783 -11.83643 -11.58894 -11.49131 -11.19114 -11.06923 -10.96397 -10.86552 -10.59655 -10.30821 -10.21416 -9.44923 -9.38804 -9.15856 -9.02321 -8.72201 -8.27862 -7.83287 -6.16344 -4.23005 0.66411 0.91074 2.38933 3.15419 3.24066 3.30304 3.32563 3.38634 3.44008 3.54290 3.69792 3.77437 4.16351 4.18391 4.31149 4.45170 4.51899 4.69078 4.74309 4.80559 4.89211 4.95611 4.96910 5.06240 5.12053 5.19791 5.35574 5.38248 5.42573 5.48891 5.51558 5.59322 5.64318 5.70194 5.79860 5.82580 5.96567 6.03712 6.08857 6.17160 6.28309 6.47270 6.85603 6.99716 7.33481 7.48173 7.53626 7.68987 7.98251 8.66557 8.80862 9.16346 9.44073 10.93795 Molecular weight = 370.16amu Principal moments of inertia in cm(-1) A = 0.007691 B = 0.002892 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3639.657665 B = 9678.228783 C =12109.915807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.116 3.884 3 H 0.055 0.945 4 C -0.084 4.084 5 C -0.059 4.059 6 C -0.119 4.119 7 C -0.070 4.070 8 C -0.186 4.186 9 C 0.509 3.491 10 F -0.176 7.176 11 F -0.178 7.178 12 F -0.179 7.179 13 C -0.069 4.069 14 N -0.478 5.478 15 C 0.026 3.974 16 C 0.503 3.497 17 O -0.537 6.537 18 N -0.717 5.717 19 C 0.254 3.746 20 C -0.543 4.543 21 H 0.062 0.938 22 C 0.064 3.936 23 N -0.886 5.886 24 Si 0.902 3.098 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.273 1.273 28 C 0.043 3.957 29 C -0.198 4.198 30 C -0.214 4.214 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.388 0.612 41 H 0.025 0.975 42 H 0.026 0.974 43 H 0.265 0.735 44 H 0.136 0.864 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.843 14.039 -17.077 25.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.008 3.992 3 H 0.073 0.927 4 C -0.084 4.084 5 C -0.077 4.077 6 C -0.137 4.137 7 C -0.088 4.088 8 C -0.188 4.188 9 C 0.455 3.545 10 F -0.157 7.157 11 F -0.160 7.160 12 F -0.160 7.160 13 C -0.088 4.088 14 N -0.201 5.201 15 C -0.105 4.105 16 C 0.287 3.713 17 O -0.415 6.415 18 N -0.366 5.366 19 C 0.133 3.867 20 C -0.581 4.581 21 H 0.080 0.920 22 C -0.140 4.140 23 N -0.523 5.523 24 Si 0.729 3.271 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.066 4.066 29 C -0.236 4.236 30 C -0.253 4.253 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.162 0.838 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.220 0.780 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.153 0.847 45 H 0.121 0.879 46 H 0.117 0.883 47 H 0.117 0.883 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.659 13.142 -16.328 24.486 hybrid contribution 2.066 0.781 -0.645 2.301 sum -10.593 13.922 -16.973 24.374 Atomic orbital electron populations 1.22024 0.92530 1.03515 1.02251 1.20680 0.96640 0.95071 0.86782 0.92715 1.19764 0.99118 0.94224 0.95334 1.21468 0.95100 0.93892 0.97218 1.21260 0.98542 1.00774 0.93117 1.20974 0.96538 0.91884 0.99441 1.19856 1.07798 0.95130 0.95968 1.18321 0.76552 0.77647 0.81989 1.93242 1.31690 1.96112 1.94667 1.93187 1.94324 1.81073 1.47378 1.93183 1.85058 1.41168 1.96622 1.20766 0.95941 1.00252 0.91831 1.61832 1.14460 1.43617 1.00150 1.22233 0.88891 0.98813 1.00532 1.20157 0.82987 0.82988 0.85161 1.90633 1.49669 1.60072 1.41109 1.46436 1.10331 1.42822 1.37009 1.19047 0.95094 0.85707 0.86871 1.21233 0.95207 1.23791 1.17862 0.91981 1.24942 0.98521 0.95677 0.94827 1.69974 1.36358 1.26959 1.19009 0.86441 0.84293 0.77817 0.78520 1.20485 1.20994 1.19740 1.22917 1.02486 0.86200 0.94964 1.23561 0.96152 1.00732 1.03121 1.23415 0.94160 1.04721 1.03004 0.91288 0.90758 0.92253 0.83834 0.84475 0.84761 0.84977 0.91949 0.88323 0.77999 0.95727 0.95616 0.92479 0.84662 0.87859 0.88297 0.88306 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.54 37.15 0.32 -0.94 16 2 C 0.12 1.14 1.84 -68.86 -0.13 1.01 16 3 H 0.06 0.50 6.12 -51.93 -0.32 0.18 16 4 C -0.08 -0.83 3.25 -104.62 -0.34 -1.17 16 5 C -0.06 -0.60 7.92 -39.59 -0.31 -0.92 16 6 C -0.12 -1.10 10.05 -39.59 -0.40 -1.49 16 7 C -0.07 -0.64 9.40 -39.58 -0.37 -1.01 16 8 C -0.19 -1.79 5.45 -104.62 -0.57 -2.36 16 9 C 0.51 4.99 3.36 36.01 0.12 5.11 16 10 F -0.18 -1.91 17.30 2.25 0.04 -1.87 16 11 F -0.18 -1.76 16.46 2.25 0.04 -1.72 16 12 F -0.18 -1.76 16.46 2.25 0.04 -1.72 16 13 C -0.07 -0.65 9.02 -39.58 -0.36 -1.00 16 14 N -0.48 -6.05 3.88 -221.53 -0.86 -6.91 16 15 C 0.03 0.36 4.93 -4.97 -0.02 0.34 16 16 C 0.50 9.71 7.69 -10.99 -0.08 9.63 16 17 O -0.54 -12.36 15.29 5.56 0.08 -12.28 16 18 N -0.72 -14.87 5.55 -61.47 -0.34 -15.21 16 19 C 0.25 6.65 5.43 -5.20 -0.03 6.63 16 20 C -0.54 -14.65 9.28 -34.45 -0.32 -14.97 16 21 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 24 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 C 0.04 0.54 5.06 -67.72 -0.34 0.20 16 29 C -0.20 -1.86 7.83 -26.70 -0.21 -2.07 16 30 C -0.21 -2.37 9.36 -26.70 -0.25 -2.62 16 31 H 0.07 0.65 8.03 -51.93 -0.42 0.23 16 32 H 0.07 0.62 5.39 -51.93 -0.28 0.34 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.14 1.61 7.95 -52.49 -0.42 1.19 16 35 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.13 1.01 7.60 -52.49 -0.40 0.61 16 37 H 0.13 1.06 7.53 -52.49 -0.40 0.66 16 38 H 0.06 0.81 6.24 -51.93 -0.32 0.48 16 39 H 0.10 1.29 5.37 -51.93 -0.28 1.01 16 40 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 41 H 0.02 0.72 8.14 -51.92 -0.42 0.29 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.14 2.03 7.69 -51.93 -0.40 1.63 16 45 H 0.10 0.85 4.85 -51.93 -0.25 0.60 16 46 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.10 1.10 8.14 -51.92 -0.42 0.68 16 48 H 0.09 0.97 6.98 -51.93 -0.36 0.61 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -31.27 399.70 -8.91 -40.18 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.25 Total: 6.91 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -3.39 Total: -3.95 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.46 Total: -47.36 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.08 Total: -12.28 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.11 Total: -5.31 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.27 -8.91 -40.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054396509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.736 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds