Wall clock time and date at job start Tue Mar 31 2020 05:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39729 * 125.78031 * 2 1 4 4 C 1.36143 * 107.86189 * 180.16729 * 3 2 1 5 5 N 1.39384 * 126.26816 * 179.84502 * 4 3 2 6 6 C 1.34777 * 119.99952 * 359.68752 * 5 4 3 7 7 O 1.21589 * 119.99553 * 0.02562 * 6 5 4 8 8 C 1.47681 * 120.00111 * 179.97438 * 6 5 4 9 9 C 1.39687 * 120.12039 * 0.25155 * 8 6 5 10 10 C 1.37810 * 119.87738 * 180.27761 * 9 8 6 11 11 C 1.38681 * 120.12098 * 359.44955 * 10 9 8 12 12 F 1.35098 * 119.88102 * 180.27866 * 11 10 9 13 13 C 1.38637 * 120.24016 * 0.30091 * 11 10 9 14 14 C 1.50705 * 119.93892 * 179.97438 * 13 11 10 15 15 F 1.39898 * 109.46953 * 180.02562 * 14 13 11 16 16 F 1.39895 * 109.47210 * 300.00069 * 14 13 11 17 17 F 1.39899 * 109.46863 * 60.00298 * 14 13 11 18 18 C 1.37856 * 120.12540 * 359.97438 * 13 11 10 19 19 N 1.35808 * 107.46888 * 359.58287 * 4 3 2 20 20 C 1.46507 * 126.09144 * 180.22377 * 19 4 3 21 21 C 1.50699 * 109.46927 * 90.00582 * 20 19 4 22 22 H 1.08002 * 120.00085 * 359.97438 * 21 20 19 23 23 C 1.37870 * 120.00332 * 180.02562 * 21 20 19 24 24 N 1.31514 * 119.99881 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00477 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47005 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47402 * 119.99333 * 25 23 21 28 28 H 1.48494 * 109.47252 * 239.99595 * 25 23 21 29 29 N 1.30828 * 125.77575 * 179.70083 * 2 1 3 30 30 H 1.08998 * 109.46863 * 270.27860 * 1 2 3 31 31 H 1.09000 * 109.46775 * 30.27211 * 1 2 3 32 32 H 1.08999 * 109.47501 * 150.27783 * 1 2 3 33 33 H 1.08004 * 126.06960 * 0.04085 * 3 2 1 34 34 H 0.96997 * 120.00311 * 179.69367 * 5 4 3 35 35 H 1.07998 * 120.05929 * 0.02562 * 9 8 6 36 36 H 1.08002 * 119.94272 * 179.73286 * 10 9 8 37 37 H 1.07994 * 120.06378 * 180.02562 * 18 13 11 38 38 H 1.09004 * 109.47044 * 210.00027 * 20 19 4 39 39 H 1.08993 * 109.47355 * 330.00317 * 20 19 4 40 40 H 0.97002 * 120.00427 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1336 0.0000 4 6 3.6194 0.7147 -0.0038 5 7 4.7497 1.5303 -0.0081 6 6 4.6131 2.8711 -0.0152 7 8 3.5039 3.3692 -0.0174 8 6 5.8107 3.7353 -0.0192 9 6 7.0861 3.1657 -0.0210 10 6 8.2002 3.9769 -0.0189 11 6 8.0568 5.3562 -0.0266 12 9 9.1523 6.1468 -0.0303 13 6 6.7933 5.9268 -0.0302 14 6 6.6453 7.4266 -0.0380 15 9 5.2869 7.7611 -0.0397 16 9 7.2553 7.9613 1.1018 17 9 7.2563 7.9494 -1.1827 18 6 5.6720 5.1249 -0.0265 19 7 3.6087 -0.6433 0.0034 20 6 4.7858 -1.5156 0.0071 21 6 5.1903 -1.8073 1.4292 22 1 4.6272 -1.3848 2.2483 23 6 6.2798 -2.6125 1.6847 24 7 6.9659 -3.1266 0.6874 25 14 6.7816 -2.9736 3.4474 26 1 5.8545 -2.2806 4.3778 27 1 6.7231 -4.4376 3.6889 28 1 8.1664 -2.4890 3.6770 29 7 2.2718 -1.0614 0.0055 30 1 -0.3633 0.0050 1.0276 31 1 -0.3633 0.8875 -0.5181 32 1 -0.3634 -0.8924 -0.5095 33 1 1.9875 2.1599 0.0006 34 1 5.6345 1.1330 -0.0061 35 1 7.1989 2.0917 -0.0198 36 1 9.1869 3.5376 -0.0159 37 1 4.6882 5.5705 -0.0297 38 1 4.5475 -2.4496 -0.5017 39 1 5.6073 -1.0196 -0.5098 40 1 7.7327 -3.6929 0.8670 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058289372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:27 Heat of formation + Delta-G solvation = -123.279864 kcal Electronic energy + Delta-G solvation = -32971.640828 eV Core-core repulsion = 27674.012716 eV Total energy + Delta-G solvation = -5297.628111 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 371.100 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.57635 -49.59693 -48.00301 -47.96899 -41.14676 -40.08518 -38.52341 -35.03714 -33.91115 -32.79776 -32.12326 -31.54826 -29.22166 -28.32142 -26.53152 -26.11410 -24.64964 -23.06526 -22.93902 -21.61289 -20.07327 -19.78465 -18.86398 -18.83551 -18.76714 -17.77440 -17.24332 -17.05406 -16.76010 -16.29351 -15.98754 -15.44609 -15.36428 -15.02628 -14.82303 -14.73283 -14.56591 -14.39056 -14.23358 -14.13144 -14.11507 -14.06395 -13.80062 -13.61748 -13.01330 -12.90769 -12.81244 -12.73951 -12.57825 -12.12954 -11.87077 -11.75414 -11.66488 -11.14907 -10.98796 -10.55633 -10.43233 -10.17553 -10.02295 -9.87438 -9.68593 -9.45998 -8.81092 -8.01321 -7.56946 -6.42096 -4.51015 -0.04212 0.37062 2.03588 2.14792 2.55528 2.70728 3.08727 3.18414 3.20866 3.21733 3.24718 3.32754 3.53754 3.56329 3.67496 3.99295 4.10196 4.16818 4.24215 4.40132 4.55167 4.87952 4.91321 5.19080 5.24898 5.27349 5.40287 5.51272 5.57840 5.94315 5.98865 6.04960 6.08021 6.16933 6.28761 6.55102 6.72633 6.94850 7.35770 7.45185 7.52029 7.69870 7.74362 8.07857 8.51791 8.61494 9.17353 10.64841 Molecular weight = 371.10amu Principal moments of inertia in cm(-1) A = 0.009302 B = 0.002795 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.278066 B =10015.123878 C =12325.302409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.051 3.949 3 C -0.288 4.288 4 C 0.297 3.703 5 N -0.631 5.631 6 C 0.566 3.434 7 O -0.504 6.504 8 C -0.138 4.138 9 C -0.022 4.022 10 C -0.155 4.155 11 C 0.175 3.825 12 F -0.118 7.118 13 C -0.233 4.233 14 C 0.516 3.484 15 F -0.169 7.169 16 F -0.171 7.171 17 F -0.171 7.171 18 C 0.017 3.983 19 N -0.345 5.345 20 C 0.256 3.744 21 C -0.542 4.542 22 H 0.066 0.934 23 C 0.068 3.932 24 N -0.889 5.889 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.280 1.280 29 N -0.280 5.280 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.163 0.837 34 H 0.415 0.585 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.184 17.765 -3.141 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C -0.320 4.320 4 C 0.075 3.925 5 N -0.277 5.277 6 C 0.353 3.647 7 O -0.378 6.378 8 C -0.141 4.141 9 C -0.041 4.041 10 C -0.174 4.174 11 C 0.155 3.845 12 F -0.096 7.096 13 C -0.235 4.235 14 C 0.462 3.538 15 F -0.150 7.150 16 F -0.152 7.152 17 F -0.153 7.153 18 C -0.002 4.002 19 N -0.130 5.130 20 C 0.138 3.862 21 C -0.580 4.580 22 H 0.084 0.916 23 C -0.136 4.136 24 N -0.527 5.527 25 Si 0.732 3.268 26 H -0.195 1.195 27 H -0.205 1.205 28 H -0.206 1.206 29 N -0.105 5.105 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.180 0.820 34 H 0.253 0.747 35 H 0.171 0.829 36 H 0.177 0.823 37 H 0.183 0.817 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.787 16.728 -3.190 17.123 hybrid contribution 1.353 0.589 0.979 1.771 sum 3.140 17.317 -2.212 17.737 Atomic orbital electron populations 1.20034 0.87484 1.02421 1.02242 1.22028 0.96594 0.90933 1.01845 1.21283 0.88996 1.00548 1.21177 1.17942 0.87669 0.83343 1.03557 1.42523 1.08596 1.05239 1.71392 1.17744 0.88674 0.81010 0.77250 1.90754 1.25582 1.73763 1.47734 1.19781 0.93315 0.93444 1.07579 1.21608 0.90554 1.01444 0.90445 1.21160 1.01552 0.90352 1.04325 1.17537 0.81426 0.89094 0.96442 1.91604 1.51586 1.73682 1.92744 1.19982 0.94559 0.92558 1.16419 1.17894 0.74205 0.87445 0.74264 1.93210 1.32086 1.93520 1.96214 1.93248 1.83121 1.87935 1.50944 1.93246 1.83077 1.88366 1.50582 1.20991 0.98704 0.91730 0.88764 1.49527 1.06542 1.01948 1.55020 1.19641 0.77767 0.89784 0.98962 1.21388 1.13335 1.31972 0.91327 0.91583 1.24930 0.95696 0.94792 0.98203 1.69921 1.19174 1.32476 1.31092 0.86317 0.78356 0.78563 0.83606 1.19520 1.20472 1.20604 1.77358 0.86100 1.21802 1.25280 0.91243 0.91069 0.91492 0.81995 0.74673 0.82882 0.82285 0.81740 0.92415 0.93904 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.44 36.01 0.38 -0.51 16 2 C 0.05 0.98 7.20 -82.46 -0.59 0.38 16 3 C -0.29 -5.57 9.58 -39.78 -0.38 -5.95 16 4 C 0.30 5.86 7.68 -152.74 -1.17 4.69 16 5 N -0.63 -10.01 5.36 -12.25 -0.07 -10.08 16 6 C 0.57 8.14 7.73 -12.40 -0.10 8.04 16 7 O -0.50 -8.38 13.47 5.29 0.07 -8.31 16 8 C -0.14 -1.50 5.87 -104.97 -0.62 -2.12 16 9 C -0.02 -0.19 9.54 -39.20 -0.37 -0.57 16 10 C -0.16 -1.23 10.01 -39.57 -0.40 -1.63 16 11 C 0.18 1.63 7.14 -39.27 -0.28 1.35 16 12 F -0.12 -1.16 16.44 2.25 0.04 -1.13 16 13 C -0.23 -2.29 5.37 -104.61 -0.56 -2.85 16 14 C 0.52 5.23 3.02 36.01 0.11 5.34 16 15 F -0.17 -1.71 15.96 2.25 0.04 -1.68 16 16 F -0.17 -1.82 17.05 2.25 0.04 -1.78 16 17 F -0.17 -1.80 17.05 2.25 0.04 -1.76 16 18 C 0.02 0.17 8.97 -39.19 -0.35 -0.18 16 19 N -0.34 -7.66 3.62 -61.45 -0.22 -7.89 16 20 C 0.26 6.05 6.02 -5.19 -0.03 6.02 16 21 C -0.54 -13.86 9.39 -34.44 -0.32 -14.18 16 22 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 23 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 24 N -0.89 -23.17 13.29 55.43 0.74 -22.43 16 25 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 29 N -0.28 -6.26 12.56 33.64 0.42 -5.83 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.16 3.01 5.83 -52.48 -0.31 2.70 16 34 H 0.42 5.85 6.02 -40.82 -0.25 5.60 16 35 H 0.15 1.17 6.40 -52.49 -0.34 0.83 16 36 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.17 1.64 6.74 -52.49 -0.35 1.29 16 38 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.04 0.96 7.52 -51.93 -0.39 0.57 16 40 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -30.00 368.33 -6.46 -36.46 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -3.29 Total: 4.62 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -4.79 Total: -0.55 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.87 Total: -46.23 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.07 Total: -8.31 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 0.15 Total: -6.35 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.00 -6.46 -36.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.824 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds