Wall clock time and date at job start Tue Mar 31 2020 05:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00086 * 2 1 4 4 C 1.53004 * 109.47180 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47208 * 179.97438 * 4 3 2 6 6 O 1.42905 * 109.47004 * 179.97438 * 5 4 3 7 7 C 1.35502 * 116.99700 * 180.02562 * 6 5 4 8 8 C 1.39152 * 119.51137 * 179.97438 * 7 6 5 9 9 C 1.36954 * 119.40196 * 180.02562 * 8 7 6 10 10 C 1.40322 * 118.46847 * 359.97438 * 9 8 7 11 11 C 1.47510 * 120.50073 * 180.02562 * 10 9 8 12 12 O 1.21616 * 120.00203 * 145.33566 * 11 10 9 13 13 N 1.34774 * 120.00003 * 325.33755 * 11 10 9 14 14 C 1.36905 * 120.00147 * 4.76422 * 13 11 10 15 15 H 1.07998 * 120.00357 * 317.02177 * 14 13 11 16 16 C 1.39024 * 119.99974 * 137.01924 * 14 13 11 17 17 N 1.31377 * 120.00023 * 164.29756 * 16 14 13 18 18 Si 1.86799 * 119.99835 * 344.30287 * 16 14 13 19 19 H 1.48498 * 109.47213 * 92.74143 * 18 16 14 20 20 H 1.48504 * 109.46908 * 212.73869 * 18 16 14 21 21 H 1.48493 * 109.47143 * 332.73863 * 18 16 14 22 22 C 1.46500 * 120.00171 * 184.77019 * 13 11 10 23 23 C 1.50696 * 109.47270 * 88.57727 * 22 13 11 24 24 C 1.38238 * 120.00387 * 273.57507 * 23 22 13 25 25 C 1.38233 * 120.00463 * 179.76522 * 24 23 22 26 26 C 1.38233 * 119.99480 * 0.48642 * 25 24 23 27 27 C 1.38230 * 120.00326 * 359.79364 * 26 25 24 28 28 C 1.38232 * 120.00241 * 359.95051 * 27 26 25 29 29 C 1.39610 * 118.99854 * 0.02562 * 10 9 8 30 30 N 1.31698 * 120.48658 * 0.02562 * 29 10 9 31 31 H 1.09001 * 109.47472 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47179 * 300.00169 * 1 2 3 33 33 H 1.09001 * 109.47104 * 59.99878 * 1 2 3 34 34 H 1.08995 * 109.47094 * 60.00393 * 3 2 1 35 35 H 1.09000 * 109.47039 * 299.99985 * 3 2 1 36 36 H 1.09006 * 109.46869 * 59.99821 * 4 3 2 37 37 H 1.08997 * 109.46854 * 300.00650 * 4 3 2 38 38 H 1.09003 * 109.46689 * 60.00350 * 5 4 3 39 39 H 1.09000 * 109.47206 * 300.00189 * 5 4 3 40 40 H 1.08000 * 120.30042 * 0.02562 * 8 7 6 41 41 H 1.08006 * 120.76532 * 179.97438 * 9 8 7 42 42 H 0.97000 * 120.00450 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.47460 * 208.57908 * 22 13 11 44 44 H 1.09003 * 109.46829 * 328.58132 * 22 13 11 45 45 H 1.08003 * 119.99850 * 0.02562 * 24 23 22 46 46 H 1.08001 * 120.00387 * 180.25448 * 25 24 23 47 47 H 1.08004 * 119.99795 * 179.76304 * 26 25 24 48 48 H 1.08009 * 120.00149 * 179.97438 * 27 26 25 49 49 H 1.07994 * 120.00415 * 180.02562 * 28 27 26 50 50 H 1.07993 * 119.75565 * 179.97438 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5823 0.0000 6 8 5.5824 2.4694 0.0012 7 6 6.2910 3.6244 0.0014 8 6 7.6816 3.5755 0.0031 9 6 8.3955 4.7442 0.0038 10 6 7.6915 5.9580 0.0022 11 6 8.4154 7.2433 0.0023 12 8 7.9597 8.1979 -0.5979 13 7 9.5817 7.3598 0.6674 14 6 10.1439 6.2617 1.2609 15 1 9.5251 5.5703 1.8136 16 6 11.5115 6.0364 1.1522 17 7 12.1023 5.1810 1.9555 18 14 12.5090 6.9502 -0.1360 19 1 13.0709 8.1889 0.4599 20 1 13.6168 6.0829 -0.6112 21 1 11.6323 7.3052 -1.2808 22 6 10.2479 8.6616 0.7555 23 6 9.7397 9.4053 1.9636 24 6 8.5965 10.1769 1.8699 25 6 8.1275 10.8552 2.9793 26 6 8.8074 10.7701 4.1798 27 6 9.9538 10.0033 4.2721 28 6 10.4198 9.3207 3.1641 29 6 6.2957 5.9309 0.0005 30 7 5.6498 4.7832 0.0009 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.6887 1.8464 0.8900 35 1 1.6886 1.8464 -0.8900 36 1 3.8575 0.6435 -0.8892 37 1 3.8567 0.6438 0.8908 38 1 3.8359 3.1237 0.8896 39 1 3.8365 3.1227 -0.8904 40 1 8.1934 2.6244 0.0038 41 1 9.4755 4.7319 0.0055 42 1 13.0565 5.0241 1.8799 43 1 11.3240 8.5137 0.8461 44 1 10.0351 9.2402 -0.1435 45 1 8.0673 10.2463 0.9309 46 1 7.2320 11.4547 2.9071 47 1 8.4431 11.3032 5.0456 48 1 10.4852 9.9371 5.2101 49 1 11.3152 8.7212 3.2362 50 1 5.7416 6.8578 -0.0003 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058328018.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:06 Heat of formation + Delta-G solvation = -42.173784 kcal Electronic energy + Delta-G solvation = -32715.516590 eV Core-core repulsion = 28287.981553 eV Total energy + Delta-G solvation = -4427.535037 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 370.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.42732 -39.38103 -38.49818 -38.16564 -37.25869 -35.19083 -33.22542 -32.53187 -32.15827 -31.02258 -30.42370 -29.89622 -27.45894 -26.14711 -25.50776 -25.06440 -23.24752 -22.83707 -22.05274 -21.57105 -21.05719 -19.46918 -18.30098 -17.75826 -16.91087 -16.77741 -16.65854 -16.24834 -15.94841 -15.78159 -15.28531 -15.15334 -14.84718 -14.59332 -14.41331 -14.17336 -13.94340 -13.88204 -13.59957 -13.30210 -12.97176 -12.86894 -12.77146 -12.40964 -12.37343 -12.14770 -12.11925 -12.05507 -11.77124 -11.68312 -11.59403 -11.30143 -11.16873 -10.86400 -10.66046 -10.56540 -10.32087 -10.08527 -10.01000 -9.47340 -9.40846 -9.31852 -8.83650 -8.45747 -8.27110 -8.09150 -7.91894 -6.63750 -4.30585 1.36734 1.76466 1.77991 1.86983 2.88372 2.92627 3.10390 3.16896 3.57341 3.70183 3.95005 4.03247 4.33971 4.50213 4.62816 4.66217 4.78360 4.79895 4.91398 4.99384 5.06182 5.20273 5.20696 5.29881 5.30354 5.32678 5.39763 5.41655 5.48774 5.57150 5.58763 5.64527 5.77161 5.84365 5.85171 5.95073 6.00158 6.09801 6.14760 6.23411 6.44475 6.50052 6.54210 6.77393 6.79888 6.90425 6.91883 6.96511 7.17061 7.19246 7.46444 7.49680 7.88103 8.05862 8.16493 8.73405 9.11688 9.46040 10.44052 Molecular weight = 370.17amu Principal moments of inertia in cm(-1) A = 0.010884 B = 0.002204 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.868054 B =12699.295559 C =14158.350224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.066 3.934 4 C -0.121 4.121 5 C 0.076 3.924 6 O -0.306 6.306 7 C 0.322 3.678 8 C -0.203 4.203 9 C 0.012 3.988 10 C -0.186 4.186 11 C 0.536 3.464 12 O -0.588 6.588 13 N -0.452 5.452 14 C -0.348 4.348 15 H 0.108 0.892 16 C 0.069 3.931 17 N -0.853 5.853 18 Si 0.870 3.130 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.257 1.257 22 C 0.134 3.866 23 C -0.084 4.084 24 C -0.102 4.102 25 C -0.131 4.131 26 C -0.128 4.128 27 C -0.128 4.128 28 C -0.092 4.092 29 C 0.173 3.827 30 N -0.554 5.554 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.139 0.861 41 H 0.178 0.822 42 H 0.278 0.722 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.127 0.873 46 H 0.115 0.885 47 H 0.113 0.887 48 H 0.116 0.884 49 H 0.123 0.877 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.001 -1.771 -0.570 12.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.010 4.010 4 C -0.159 4.159 5 C 0.000 4.000 6 O -0.213 6.213 7 C 0.143 3.857 8 C -0.224 4.224 9 C -0.013 4.013 10 C -0.191 4.191 11 C 0.326 3.674 12 O -0.473 6.473 13 N -0.171 5.171 14 C -0.475 4.475 15 H 0.125 0.875 16 C -0.140 4.140 17 N -0.486 5.486 18 Si 0.697 3.303 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.181 1.181 22 C 0.012 3.988 23 C -0.085 4.085 24 C -0.120 4.120 25 C -0.149 4.149 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.111 4.111 29 C 0.017 3.983 30 N -0.278 5.278 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.157 0.843 41 H 0.195 0.805 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.145 0.855 46 H 0.133 0.867 47 H 0.131 0.869 48 H 0.134 0.866 49 H 0.141 0.859 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -12.725 -1.875 -0.798 12.887 hybrid contribution 1.184 0.639 -0.242 1.367 sum -11.541 -1.236 -1.041 11.653 Atomic orbital electron populations 1.22751 0.80776 1.02834 1.00111 1.87861 1.19878 1.27842 1.95473 1.22323 0.93189 0.84781 1.00746 1.21410 0.92932 0.96645 1.04886 1.22328 0.78336 0.96561 1.02754 1.86142 1.19941 1.27249 1.87991 1.19997 0.89084 0.84622 0.91999 1.20845 0.90591 1.00753 1.10190 1.22305 1.03367 0.89435 0.86162 1.20725 0.94613 0.95193 1.08575 1.17920 0.82830 0.86921 0.79728 1.90634 1.69586 1.40472 1.46602 1.43526 1.20265 1.06632 1.46652 1.19139 0.93063 1.02526 1.32760 0.87460 1.25374 0.96743 0.95912 0.95934 1.69690 1.11599 1.33669 1.33686 0.87010 0.80473 0.79513 0.83280 1.19665 1.21099 1.18117 1.20679 0.96876 0.85759 0.95478 1.20256 0.95775 0.96492 0.96006 1.21231 0.95695 0.96091 0.99016 1.21051 0.99901 1.00684 0.93275 1.21031 0.96173 1.00023 0.97450 1.21064 0.97045 0.98221 0.98319 1.21137 1.00122 0.97636 0.92218 1.22402 0.90598 0.94375 0.90902 1.67324 1.40828 0.98109 1.21490 0.89535 0.93952 0.93980 0.92819 0.92840 0.90064 0.90006 0.91487 0.91504 0.84277 0.80482 0.91110 0.90629 0.90077 0.85505 0.86718 0.86872 0.86602 0.85890 0.82245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.99 10.70 -35.23 -0.38 -4.36 16 3 C 0.07 0.60 5.94 37.16 0.22 0.82 16 4 C -0.12 -1.25 5.95 -26.73 -0.16 -1.40 16 5 C 0.08 0.93 5.30 37.15 0.20 1.13 16 6 O -0.31 -4.70 10.10 -18.20 -0.18 -4.89 16 7 C 0.32 5.56 7.49 -16.95 -0.13 5.43 16 8 C -0.20 -3.54 9.97 -39.71 -0.40 -3.94 16 9 C 0.01 0.24 7.84 -39.26 -0.31 -0.07 16 10 C -0.19 -3.76 5.49 -104.82 -0.58 -4.33 16 11 C 0.54 11.93 7.38 -12.48 -0.09 11.84 16 12 O -0.59 -13.69 15.73 5.26 0.08 -13.61 16 13 N -0.45 -10.13 2.08 -117.29 -0.24 -10.37 16 14 C -0.35 -8.18 6.59 -15.00 -0.10 -8.28 16 15 H 0.11 2.72 6.59 -52.49 -0.35 2.37 16 16 C 0.07 1.64 5.32 -17.45 -0.09 1.55 16 17 N -0.85 -21.37 13.95 55.50 0.77 -20.60 16 18 Si 0.87 18.75 24.94 -169.99 -4.24 14.51 16 19 H -0.27 -5.62 6.67 56.52 0.38 -5.24 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 22 C 0.13 2.82 4.25 -5.20 -0.02 2.79 16 23 C -0.08 -1.64 5.46 -104.62 -0.57 -2.21 16 24 C -0.10 -1.84 9.72 -39.58 -0.38 -2.22 16 25 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 26 C -0.13 -1.91 10.05 -39.59 -0.40 -2.31 16 27 C -0.13 -2.05 10.05 -39.59 -0.40 -2.45 16 28 C -0.09 -1.71 9.69 -39.58 -0.38 -2.09 16 29 C 0.17 3.20 10.78 -17.10 -0.18 3.02 16 30 N -0.55 -9.76 9.19 -12.93 -0.12 -9.88 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 39 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 41 H 0.18 3.64 5.67 -52.48 -0.30 3.34 16 42 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 43 H 0.08 1.60 3.42 -51.93 -0.18 1.42 16 44 H 0.08 1.67 7.37 -51.93 -0.38 1.29 16 45 H 0.13 2.34 7.37 -52.48 -0.39 1.95 16 46 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 47 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 48 H 0.12 1.57 8.06 -52.48 -0.42 1.14 16 49 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 50 H 0.16 2.73 8.00 -52.49 -0.42 2.31 16 LS Contribution 416.11 15.07 6.27 6.27 Total: -1.00 -27.78 416.11 -8.18 -35.96 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -7.09 Total: 10.82 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -3.06 Total: -3.85 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.41 Total: -40.85 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.48 Total: -22.86 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.24 Total: 14.51 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -27.78 -8.18 -35.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058328018.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.216 kcal (2) G-P(sol) polarization free energy of solvation -27.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds