Wall clock time and date at job start Tue Mar 31 2020 06:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00234 * 2 1 4 4 H 1.48501 * 109.46801 * 90.00071 * 3 2 1 5 5 H 1.48493 * 109.47049 * 210.00368 * 3 2 1 6 6 H 1.48497 * 109.47045 * 330.00561 * 3 2 1 7 7 C 1.37872 * 119.99537 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00092 * 179.04406 * 7 2 1 9 9 C 1.50703 * 120.00319 * 359.04017 * 7 2 1 10 10 N 1.46503 * 109.46791 * 58.09351 * 9 7 2 11 11 C 1.46501 * 120.00014 * 59.30613 * 10 9 7 12 12 C 1.50700 * 109.47682 * 93.58720 * 11 10 9 13 13 C 1.38672 * 120.41568 * 275.10342 * 12 11 10 14 14 C 1.38630 * 118.41886 * 179.78010 * 13 12 11 15 15 C 1.38224 * 119.16078 * 0.51427 * 14 13 12 16 16 N 1.31857 * 120.76247 * 359.72175 * 15 14 13 17 17 C 1.31888 * 121.72613 * 0.02562 * 16 15 14 18 18 C 1.34769 * 119.99984 * 239.29682 * 10 9 7 19 19 O 1.21286 * 120.00014 * 182.44722 * 18 10 9 20 20 C 1.50698 * 119.99978 * 2.45050 * 18 10 9 21 21 H 1.09001 * 110.67103 * 48.01336 * 20 18 10 22 22 C 1.54707 * 110.75129 * 284.79569 * 20 18 10 23 23 C 1.51653 * 101.92911 * 266.96596 * 22 20 18 24 24 C 1.37742 * 132.15522 * 164.57244 * 23 22 20 25 25 C 1.38446 * 119.96442 * 180.38062 * 24 23 22 26 26 Cl 1.73607 * 120.13073 * 180.02562 * 25 24 23 27 27 C 1.38387 * 119.74092 * 359.97438 * 25 24 23 28 28 C 1.37927 * 120.33726 * 359.83933 * 27 25 24 29 29 C 1.38878 * 107.04532 * 344.61113 * 23 22 20 30 30 O 1.36610 * 111.28575 * 358.90268 * 29 23 22 31 31 H 0.96996 * 120.00264 * 174.50357 * 1 2 3 32 32 H 1.09001 * 109.47224 * 178.09075 * 9 7 2 33 33 H 1.08994 * 109.47377 * 298.09571 * 9 7 2 34 34 H 1.08997 * 109.46959 * 213.59101 * 11 10 9 35 35 H 1.09009 * 109.46750 * 333.58230 * 11 10 9 36 36 H 1.08002 * 120.79314 * 0.02562 * 13 12 11 37 37 H 1.08000 * 120.41959 * 180.26243 * 14 13 12 38 38 H 1.07996 * 119.62295 * 179.70653 * 15 14 13 39 39 H 1.08002 * 119.61925 * 180.02562 * 17 16 15 40 40 H 1.08998 * 110.93386 * 25.11962 * 22 20 18 41 41 H 1.08990 * 110.93891 * 148.80585 * 22 20 18 42 42 H 1.08000 * 120.01839 * 0.35815 * 24 23 22 43 43 H 1.08007 * 119.83161 * 179.80854 * 27 25 24 44 44 H 1.08001 * 119.86566 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4467 2.6527 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0161 9 6 1.2511 -2.4991 0.0207 10 7 0.3578 -2.5661 -1.1385 11 6 0.9086 -2.4830 -2.4935 12 6 1.1584 -3.8726 -3.0204 13 6 2.3412 -4.5334 -2.7248 14 6 2.5259 -5.8122 -3.2273 15 6 1.5366 -6.3778 -4.0096 16 7 0.4262 -5.7177 -4.2744 17 6 0.2145 -4.5019 -3.8092 18 6 -0.9706 -2.7045 -0.9584 19 8 -1.7055 -2.8046 -1.9181 20 6 -1.5430 -2.7347 0.4353 21 1 -1.1430 -1.9159 1.0334 22 6 -1.2627 -4.0966 1.1136 23 6 -2.5193 -4.8774 0.7801 24 6 -2.8143 -6.2217 0.8353 25 6 -4.0679 -6.6707 0.4562 26 17 -4.4445 -8.3640 0.5246 27 6 -5.0199 -5.7643 0.0236 28 6 -4.7267 -4.4175 -0.0283 29 6 -3.4688 -3.9579 0.3538 30 8 -2.9793 -2.6832 0.3974 31 1 -0.4850 -0.8361 -0.0805 32 1 1.9583 -3.3276 -0.0172 33 1 0.6635 -2.5646 0.9364 34 1 0.1994 -1.9701 -3.1431 35 1 1.8470 -1.9288 -2.4708 36 1 3.0988 -4.0646 -2.1143 37 1 3.4330 -6.3580 -3.0136 38 1 1.6747 -7.3717 -4.4089 39 1 -0.7077 -3.9925 -4.0469 40 1 -0.3823 -4.5727 0.6820 41 1 -1.1515 -3.9793 2.1914 42 1 -2.0679 -6.9252 1.1736 43 1 -5.9973 -6.1132 -0.2754 44 1 -5.4753 -3.7168 -0.3675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058403585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:58 Heat of formation + Delta-G solvation = 0.498294 kcal Electronic energy + Delta-G solvation = -32104.827920 eV Core-core repulsion = 27820.874780 eV Total energy + Delta-G solvation = -4283.953140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 372.103 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.38674 -40.00771 -38.84533 -37.50675 -36.14154 -35.51836 -33.33471 -32.72081 -31.92923 -31.22365 -29.85571 -29.50617 -27.53942 -26.34244 -23.99746 -23.34026 -22.86617 -22.45802 -21.77430 -21.64846 -19.17760 -17.84680 -17.22586 -16.92306 -16.81511 -16.50867 -16.14617 -15.87157 -15.27714 -15.12757 -14.72069 -14.20725 -14.06535 -13.91778 -13.78326 -13.46464 -13.27432 -13.19276 -12.98332 -12.89297 -12.76935 -12.54019 -12.37188 -12.26317 -12.07003 -11.51702 -11.40295 -11.33293 -11.09290 -11.00145 -10.87341 -10.70276 -10.64585 -10.29646 -9.63169 -9.52873 -9.29974 -9.13360 -8.99131 -8.82435 -8.69073 -7.95235 -7.79684 -6.64684 -4.56844 1.14532 1.22215 1.30845 1.50037 2.08537 3.01610 3.24040 3.28345 3.35245 3.44894 3.65958 3.73755 4.14318 4.26025 4.39439 4.61160 4.67683 4.78590 4.88936 5.02111 5.09174 5.12355 5.15439 5.20353 5.24857 5.33977 5.39361 5.56345 5.67364 5.70423 5.74774 5.87276 5.92716 5.99902 6.10175 6.14969 6.24352 6.28284 6.34207 6.39390 6.42987 6.53891 6.62267 6.94389 7.09833 7.19289 7.62764 8.02751 8.17279 8.20303 8.46734 8.79699 9.22069 10.63213 Molecular weight = 372.10amu Principal moments of inertia in cm(-1) A = 0.008365 B = 0.003870 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3346.433561 B = 7233.037038 C = 9576.191185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.035 3.965 3 Si 1.067 2.933 4 H -0.284 1.284 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.619 4.619 8 H 0.060 0.940 9 C 0.205 3.795 10 N -0.578 5.578 11 C 0.167 3.833 12 C -0.141 4.141 13 C -0.062 4.062 14 C -0.181 4.181 15 C 0.087 3.913 16 N -0.490 5.490 17 C 0.119 3.881 18 C 0.502 3.498 19 O -0.548 6.548 20 C 0.064 3.936 21 H 0.154 0.846 22 C -0.096 4.096 23 C -0.162 4.162 24 C -0.058 4.058 25 C -0.069 4.069 26 Cl -0.075 7.075 27 C -0.075 4.075 28 C -0.125 4.125 29 C 0.131 3.869 30 O -0.269 6.269 31 H 0.275 0.725 32 H 0.032 0.968 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 -11.419 0.944 11.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.173 4.173 3 Si 0.894 3.106 4 H -0.210 1.210 5 H -0.212 1.212 6 H -0.208 1.208 7 C -0.657 4.657 8 H 0.078 0.922 9 C 0.087 3.913 10 N -0.311 5.311 11 C 0.043 3.957 12 C -0.145 4.145 13 C -0.089 4.089 14 C -0.201 4.201 15 C -0.070 4.070 16 N -0.199 5.199 17 C -0.038 4.038 18 C 0.288 3.712 19 O -0.426 6.426 20 C 0.004 3.996 21 H 0.171 0.829 22 C -0.133 4.133 23 C -0.163 4.163 24 C -0.077 4.077 25 C -0.096 4.096 26 Cl -0.046 7.046 27 C -0.093 4.093 28 C -0.144 4.144 29 C 0.085 3.915 30 O -0.181 6.181 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.166 0.834 39 H 0.174 0.826 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.601 -10.157 0.028 10.485 hybrid contribution 1.149 -1.394 0.548 1.888 sum -1.452 -11.552 0.576 11.657 Atomic orbital electron populations 1.70913 1.07072 1.32047 1.42708 1.25921 0.96285 1.02937 0.92191 0.83564 0.74773 0.75037 0.77217 1.21017 1.21192 1.20757 1.22222 0.94782 0.91608 1.57113 0.92166 1.19733 0.90003 0.97516 0.84082 1.49020 1.05449 1.69060 1.07582 1.19974 1.01182 0.90659 0.83854 1.21508 0.94966 0.99449 0.98539 1.21581 0.96794 0.94015 0.96463 1.22077 1.00949 0.96552 1.00490 1.22687 0.89503 0.99396 0.95449 1.67714 1.21681 1.08571 1.21906 1.22853 0.98271 0.90230 0.92495 1.20505 0.83299 0.76944 0.90444 1.90617 1.59314 1.50840 1.41861 1.23751 0.79195 1.00642 0.96005 0.82948 1.21808 0.96462 0.92661 1.02397 1.20657 0.97128 0.93750 1.04757 1.20018 0.95147 0.93825 0.98732 1.20519 0.95677 0.84932 1.08475 1.98344 1.94500 1.14462 1.97343 1.20688 0.99019 0.91217 0.98414 1.20169 0.95478 0.95030 1.03703 1.19800 0.94297 0.84445 0.92995 1.87129 1.20173 1.22892 1.87891 0.91003 0.94968 0.94502 0.90322 0.88256 0.84742 0.85241 0.83386 0.82585 0.88507 0.87806 0.84946 0.84272 0.84394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.61 13.51 55.43 0.75 -22.86 16 2 C 0.04 0.87 5.39 -17.82 -0.10 0.78 16 3 Si 1.07 22.23 29.90 -169.99 -5.08 17.15 16 4 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.29 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.62 -14.40 8.38 -34.44 -0.29 -14.69 16 8 H 0.06 1.39 7.81 -52.49 -0.41 0.98 16 9 C 0.20 4.22 4.99 -5.19 -0.03 4.20 16 10 N -0.58 -11.98 1.94 -176.43 -0.34 -12.32 16 11 C 0.17 3.23 5.36 -5.19 -0.03 3.21 16 12 C -0.14 -2.44 5.46 -104.49 -0.57 -3.01 16 13 C -0.06 -0.93 9.88 -39.28 -0.39 -1.31 16 14 C -0.18 -2.35 10.11 -39.44 -0.40 -2.75 16 15 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 16 N -0.49 -8.37 10.36 -13.26 -0.14 -8.50 16 17 C 0.12 2.12 10.68 -17.55 -0.19 1.93 16 18 C 0.50 10.92 5.36 -10.99 -0.06 10.87 16 19 O -0.55 -13.13 15.54 -13.33 -0.21 -13.34 16 20 C 0.06 1.25 2.63 -26.99 -0.07 1.18 16 21 H 0.15 3.19 5.66 -51.93 -0.29 2.90 16 22 C -0.10 -1.53 5.63 -26.52 -0.15 -1.68 16 23 C -0.16 -2.61 6.26 -104.10 -0.65 -3.26 16 24 C -0.06 -0.83 9.82 -39.69 -0.39 -1.22 16 25 C -0.07 -0.93 6.33 -39.45 -0.25 -1.18 16 26 Cl -0.08 -0.89 28.97 -51.86 -1.50 -2.39 16 27 C -0.07 -0.97 9.81 -39.64 -0.39 -1.36 16 28 C -0.12 -1.87 10.06 -39.31 -0.40 -2.26 16 29 C 0.13 2.31 6.75 -38.96 -0.26 2.04 16 30 O -0.27 -5.43 10.50 -40.60 -0.43 -5.86 16 31 H 0.27 6.97 2.23 -40.82 -0.09 6.88 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.04 0.75 5.01 -51.93 -0.26 0.49 16 34 H 0.08 1.61 7.49 -51.93 -0.39 1.22 16 35 H 0.10 1.92 7.23 -51.92 -0.38 1.54 16 36 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.16 2.93 7.70 -52.49 -0.40 2.53 16 40 H 0.10 1.51 7.34 -51.93 -0.38 1.13 16 41 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 44 H 0.14 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 381.20 15.07 5.74 5.74 Total: -1.00 -29.47 381.20 -10.78 -40.26 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -4.78 Total: 9.62 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -4.80 Total: -7.50 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.27 Total: -43.68 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.63 Total: -19.20 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.08 Total: 17.15 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.47 -10.78 -40.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058403585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.758 kcal (2) G-P(sol) polarization free energy of solvation -29.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds