Wall clock time and date at job start Tue Mar 31 2020 05:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00373 * 2 1 4 4 C 1.50697 * 109.47637 * 124.99491 * 3 2 1 5 5 C 1.37565 * 119.91106 * 265.28831 * 4 3 2 6 6 C 1.40265 * 119.97795 * 180.27381 * 5 4 3 7 7 C 1.46390 * 120.09728 * 179.71327 * 6 5 4 8 8 C 1.37857 * 120.00061 * 328.71557 * 7 6 5 9 9 C 1.43200 * 119.99559 * 172.72124 * 8 7 6 10 10 N 8.27757 * 90.28391 * 56.39722 * 2 1 3 11 11 C 1.47111 * 119.99974 * 352.99524 * 8 7 6 12 12 O 1.21651 * 120.00111 * 109.48604 * 11 8 7 13 13 N 1.34778 * 120.00524 * 289.48514 * 11 8 7 14 14 C 1.46494 * 120.00466 * 175.58621 * 13 11 8 15 15 C 1.46503 * 119.99540 * 355.58772 * 13 11 8 16 16 C 1.40295 * 119.80162 * 359.44145 * 6 5 4 17 17 C 1.37912 * 119.81580 * 0.27273 * 16 6 5 18 18 O 1.35961 * 119.98876 * 180.02562 * 17 16 6 19 19 C 1.42899 * 116.99793 * 359.97438 * 18 17 16 20 20 C 1.53006 * 109.46796 * 180.02562 * 19 18 17 21 21 C 1.39117 * 119.90808 * 84.99742 * 4 3 2 22 22 O 1.35540 * 119.90007 * 359.97438 * 21 4 3 23 23 C 1.34730 * 116.99806 * 270.01863 * 22 21 4 24 24 H 1.08001 * 120.00045 * 0.02562 * 23 22 21 25 25 C 1.38763 * 120.00145 * 179.97438 * 23 22 21 26 26 N 1.31475 * 120.00205 * 179.97438 * 25 23 22 27 27 Si 1.86809 * 119.99802 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47096 * 89.99944 * 27 25 23 29 29 H 1.48497 * 109.46583 * 209.99866 * 27 25 23 30 30 H 1.48494 * 109.46974 * 329.99518 * 27 25 23 31 31 H 1.08004 * 119.99724 * 0.02562 * 1 2 3 32 32 H 1.07992 * 120.00394 * 179.97438 * 1 2 3 33 33 H 1.08004 * 119.99724 * 179.97438 * 2 1 3 34 34 H 1.09005 * 109.47014 * 4.99420 * 3 2 1 35 35 H 1.08998 * 109.47465 * 245.00016 * 3 2 1 36 36 H 1.07998 * 120.00751 * 359.97438 * 5 4 3 37 37 H 1.08004 * 119.99630 * 148.72151 * 7 6 5 38 38 H 1.09005 * 109.47021 * 359.97438 * 14 13 11 39 39 H 1.08998 * 109.47335 * 119.99931 * 14 13 11 40 40 H 1.09003 * 109.47013 * 240.00501 * 14 13 11 41 41 H 1.08993 * 109.47280 * 94.55699 * 15 13 11 42 42 H 1.09006 * 109.46814 * 214.56291 * 15 13 11 43 43 H 1.09003 * 109.46745 * 334.55634 * 15 13 11 44 44 H 1.08002 * 120.08920 * 180.30341 * 16 6 5 45 45 H 1.08993 * 109.47496 * 300.00550 * 19 18 17 46 46 H 1.08994 * 109.46868 * 60.00813 * 19 18 17 47 47 H 1.09004 * 109.46854 * 300.00528 * 20 19 18 48 48 H 1.08997 * 109.46783 * 60.00111 * 20 19 18 49 49 H 1.08996 * 109.46641 * 180.02562 * 20 19 18 50 50 H 0.97006 * 120.00078 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0204 1.3327 1.1639 5 6 2.6429 1.9215 2.3485 6 6 3.5345 1.9531 3.4308 7 6 3.1377 2.5845 4.6905 8 6 2.2656 3.6521 4.6818 9 6 1.7556 4.1700 5.9156 10 7 1.3510 4.5810 6.8943 11 6 1.8541 4.2553 3.4047 12 8 0.7160 4.1080 3.0011 13 7 2.7380 4.9712 2.6817 14 6 2.3582 5.4902 1.3655 15 6 4.0788 5.2304 3.2122 16 6 4.8055 1.3728 3.3043 17 6 5.1732 0.7795 2.1149 18 8 6.4039 0.2156 1.9886 19 6 7.2645 0.2747 3.1279 20 6 8.5947 -0.4055 2.7979 21 6 4.2809 0.7574 1.0394 22 8 4.6446 0.1732 -0.1283 23 6 4.3685 -1.1381 -0.2682 24 1 3.8781 -1.6749 0.5304 25 6 4.7132 -1.7987 -1.4388 26 7 4.4442 -3.0784 -1.5751 27 14 5.5608 -0.8701 -2.8204 28 1 7.0325 -0.9458 -2.6377 29 1 5.1919 -1.4777 -4.1242 30 1 5.1315 0.5513 -2.7977 31 1 -0.5400 0.9354 -0.0004 32 1 -0.5400 -0.9352 -0.0004 33 1 1.8499 -0.9354 0.0004 34 1 1.3586 2.1316 0.0895 35 1 2.6213 1.4025 -0.9313 36 1 1.6620 2.3634 2.4434 37 1 3.5284 2.2139 5.6268 38 1 1.3319 5.1984 1.1422 39 1 2.4348 6.5775 1.3676 40 1 3.0252 5.0804 0.6070 41 1 4.7698 4.4749 2.8384 42 1 4.4117 6.2177 2.8918 43 1 4.0524 5.1916 4.3012 44 1 5.4939 1.3902 4.1364 45 1 7.4453 1.3163 3.3930 46 1 6.7925 -0.2371 3.9665 47 1 8.4140 -1.4472 2.5324 48 1 9.0664 0.1066 1.9593 49 1 9.2509 -0.3609 3.6670 50 1 4.6855 -3.5403 -2.3933 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059334903.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:31 Heat of formation + Delta-G solvation = 8.369703 kcal Electronic energy + Delta-G solvation = -34815.821002 eV Core-core repulsion = 30390.477695 eV Total energy + Delta-G solvation = -4425.343307 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 370.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.71462 -39.85614 -37.95809 -37.06488 -36.62303 -35.66711 -34.74980 -33.40550 -32.05641 -31.57567 -30.44143 -28.89825 -28.09396 -26.59445 -26.21793 -25.15735 -23.95810 -23.09859 -21.41572 -21.13779 -20.15881 -19.06515 -18.04013 -17.91032 -17.64153 -16.88955 -16.69315 -16.31755 -15.86486 -15.69800 -15.36151 -14.63347 -14.56647 -14.38914 -14.02040 -13.87371 -13.78046 -13.56181 -13.24405 -13.10763 -13.06617 -12.85385 -12.77869 -12.70671 -12.66917 -12.54515 -12.50421 -12.22110 -12.20232 -11.99176 -11.69586 -11.65669 -11.37348 -11.05224 -10.89545 -10.69098 -10.62043 -10.33509 -10.22799 -10.11753 -9.62976 -9.49372 -8.88231 -8.77205 -8.40576 -8.24710 -7.56750 -6.14341 -3.86253 0.18760 1.61812 1.79862 2.16850 2.46756 2.88433 2.89788 3.16067 3.33356 3.36969 3.45768 3.50796 3.76434 3.86541 4.27727 4.43024 4.66695 4.84478 4.87293 4.97818 5.00603 5.11898 5.13541 5.18097 5.20672 5.23929 5.30524 5.40500 5.41677 5.51870 5.53420 5.55655 5.58485 5.68352 5.74221 5.75361 5.86729 5.89452 6.02076 6.16363 6.18280 6.22759 6.29554 6.44825 6.52445 6.57503 6.80698 6.92215 7.03881 7.27999 7.32850 7.40016 7.66052 7.87449 7.88904 8.24223 9.21531 9.80211 10.96571 Molecular weight = 370.17amu Principal moments of inertia in cm(-1) A = 0.009270 B = 0.003743 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.825588 B = 7479.813945 C = 8963.952435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.123 4.123 3 C -0.044 4.044 4 C -0.075 4.075 5 C -0.107 4.107 6 C -0.100 4.100 7 C 0.054 3.946 8 C -0.135 4.135 9 C 0.268 3.732 10 N -0.417 5.417 11 C 0.582 3.418 12 O -0.530 6.530 13 N -0.604 5.604 14 C 0.079 3.921 15 C 0.076 3.924 16 C -0.171 4.171 17 C 0.098 3.902 18 O -0.288 6.288 19 C 0.052 3.948 20 C -0.151 4.151 21 C 0.157 3.843 22 O -0.260 6.260 23 C -0.354 4.354 24 H 0.085 0.915 25 C 0.058 3.942 26 N -0.901 5.901 27 Si 0.898 3.102 28 H -0.279 1.279 29 H -0.289 1.289 30 H -0.263 1.263 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.130 0.870 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 13.526 9.449 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.140 4.140 3 C -0.081 4.081 4 C -0.076 4.076 5 C -0.125 4.125 6 C -0.101 4.101 7 C 0.031 3.969 8 C -0.142 4.142 9 C -0.046 4.046 10 N -0.093 5.093 11 C 0.369 3.631 12 O -0.407 6.407 13 N -0.336 5.336 14 C -0.063 4.063 15 C -0.067 4.067 16 C -0.190 4.190 17 C 0.052 3.948 18 O -0.201 6.201 19 C -0.024 4.024 20 C -0.209 4.209 21 C 0.111 3.889 22 O -0.173 6.173 23 C -0.430 4.430 24 H 0.102 0.898 25 C -0.141 4.141 26 N -0.544 5.544 27 Si 0.726 3.274 28 H -0.205 1.205 29 H -0.215 1.215 30 H -0.188 1.188 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.147 0.853 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.148 0.852 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.652 13.975 10.259 17.538 hybrid contribution 0.717 -0.003 -0.583 0.924 sum 3.369 13.972 9.676 17.326 Atomic orbital electron populations 1.23683 0.95867 1.00978 1.05037 1.23185 0.95519 0.99253 0.96078 1.19580 0.95999 0.95891 0.96647 1.19901 0.93125 0.99071 0.95529 1.21560 1.00043 0.99647 0.91287 1.18352 0.95043 1.03662 0.93020 1.22902 0.87153 0.88679 0.98155 1.17880 1.06037 1.02395 0.87897 1.25058 0.93661 0.93632 0.92292 1.81246 1.08569 1.08530 1.10970 1.17576 0.84799 0.77482 0.83275 1.90853 1.19000 1.59787 1.71053 1.47494 1.14105 1.52903 1.19141 1.21762 1.03189 0.98502 0.82832 1.21857 0.83053 1.01947 0.99818 1.21124 0.97191 1.03226 0.97455 1.19539 0.86644 0.95199 0.93432 1.86356 1.22266 1.73951 1.37502 1.22740 0.91152 1.00052 0.88428 1.21740 0.94568 1.02229 1.02322 1.18382 0.89694 0.94931 0.85908 1.83375 1.79788 1.25125 1.29046 1.20259 1.39256 0.79983 1.03457 0.89754 1.24216 0.97504 0.94893 0.97496 1.69606 1.48694 1.08053 1.28033 0.86289 0.79891 0.80614 0.80654 1.20507 1.21504 1.18770 0.89390 0.88920 0.85267 0.91266 0.89012 0.84234 0.83694 0.89227 0.92100 0.91464 0.91634 0.90912 0.90895 0.85177 0.92665 0.92475 0.91176 0.91564 0.90917 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.58 14.32 29.02 0.42 -3.16 16 2 C -0.12 -2.29 9.27 -36.03 -0.33 -2.62 16 3 C -0.04 -0.78 5.47 -29.04 -0.16 -0.93 16 4 C -0.08 -1.33 5.12 -104.54 -0.54 -1.87 16 5 C -0.11 -1.62 7.84 -39.07 -0.31 -1.93 16 6 C -0.10 -1.27 5.12 -105.08 -0.54 -1.81 16 7 C 0.05 0.53 9.09 -36.44 -0.33 0.20 16 8 C -0.14 -1.52 3.86 -104.51 -0.40 -1.93 16 9 C 0.27 3.30 15.36 -22.47 -0.35 2.96 16 10 N -0.42 -5.85 18.54 41.84 0.78 -5.07 16 11 C 0.58 7.46 4.01 -12.66 -0.05 7.41 16 12 O -0.53 -8.50 15.06 5.23 0.08 -8.42 16 13 N -0.60 -6.28 3.10 -190.92 -0.59 -6.87 16 14 C 0.08 0.74 10.70 59.84 0.64 1.38 16 15 C 0.08 0.58 9.66 59.85 0.58 1.15 16 16 C -0.17 -2.23 8.78 -38.93 -0.34 -2.57 16 17 C 0.10 1.71 6.70 -39.13 -0.26 1.45 16 18 O -0.29 -5.18 9.92 -34.21 -0.34 -5.52 16 19 C 0.05 0.63 5.46 37.16 0.20 0.84 16 20 C -0.15 -1.68 10.28 37.16 0.38 -1.29 16 21 C 0.16 3.17 5.59 -38.69 -0.22 2.95 16 22 O -0.26 -6.29 7.40 -13.61 -0.10 -6.39 16 23 C -0.35 -9.45 8.67 30.93 0.27 -9.18 16 24 H 0.08 2.42 7.70 -52.49 -0.40 2.01 16 25 C 0.06 1.60 5.50 -17.51 -0.10 1.50 16 26 N -0.90 -26.05 13.96 55.48 0.77 -25.28 16 27 Si 0.90 21.74 28.62 -169.99 -4.86 16.88 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 31 H 0.09 1.30 7.84 -52.48 -0.41 0.89 16 32 H 0.09 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.13 2.84 6.34 -52.48 -0.33 2.50 16 34 H 0.07 1.06 7.70 -51.93 -0.40 0.66 16 35 H 0.09 1.73 7.68 -51.93 -0.40 1.33 16 36 H 0.14 2.18 4.85 -52.49 -0.25 1.93 16 37 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.09 0.96 6.91 -51.93 -0.36 0.61 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.52 8.01 -51.93 -0.42 0.11 16 42 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 43 H 0.07 0.49 6.76 -51.93 -0.35 0.13 16 44 H 0.13 1.26 6.28 -52.49 -0.33 0.93 16 45 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 46 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 427.32 15.07 6.44 6.44 Total: -1.00 -32.91 427.32 -6.23 -39.13 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.97 Total: 2.56 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.43 Total: -7.46 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.96 Total: -37.22 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.36 Total: -20.34 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.86 Total: 16.88 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -32.91 -6.23 -39.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059334903.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.503 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds