Wall clock time and date at job start Tue Mar 31 2020 05:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38288 * 119.92496 * 2 1 4 4 C 1.38105 * 120.07264 * 180.02562 * 3 2 1 5 5 C 1.38892 * 119.92742 * 359.97438 * 4 3 2 6 6 N 1.39843 * 120.07229 * 179.97438 * 5 4 3 7 7 C 1.34779 * 120.00045 * 211.04504 * 6 5 4 8 8 O 1.21703 * 119.99581 * 7.11994 * 7 6 5 9 9 C 1.46798 * 120.00014 * 187.11762 * 7 6 5 10 10 C 1.43203 * 119.99921 * 353.72965 * 9 7 6 11 11 N 7.66810 * 172.04400 * 41.30573 * 2 1 3 12 12 C 1.38529 * 120.00064 * 173.72753 * 9 7 6 13 13 C 1.41177 * 119.99989 * 350.31751 * 12 9 7 14 14 C 1.38234 * 126.87633 * 311.96379 * 13 12 9 15 15 N 1.35585 * 109.44138 * 180.12919 * 14 13 12 16 16 C 1.36877 * 124.72986 * 179.86044 * 15 14 13 17 17 H 1.07995 * 119.99788 * 150.88726 * 16 15 14 18 18 C 1.39104 * 119.99637 * 330.89015 * 16 15 14 19 19 N 1.31250 * 120.00343 * 2.26902 * 18 16 15 20 20 Si 1.86805 * 119.99522 * 182.26989 * 18 16 15 21 21 H 1.48502 * 109.47072 * 90.00066 * 20 18 16 22 22 H 1.48495 * 109.46758 * 209.99681 * 20 18 16 23 23 H 1.48500 * 109.47342 * 329.99977 * 20 18 16 24 24 C 1.38472 * 110.54139 * 359.59591 * 15 14 13 25 25 C 1.39016 * 132.90463 * 180.24358 * 24 15 14 26 26 C 1.37935 * 119.96180 * 179.97438 * 25 24 15 27 27 C 1.38617 * 120.59628 * 0.02562 * 26 25 24 28 28 C 1.37967 * 120.24195 * 359.97438 * 27 26 25 29 29 C 1.39078 * 119.69271 * 0.02562 * 28 27 26 30 30 C 1.38895 * 119.85300 * 0.27514 * 5 4 3 31 31 C 1.38101 * 119.92860 * 359.44347 * 30 5 4 32 32 H 1.09000 * 109.47394 * 89.99946 * 1 2 3 33 33 H 1.09005 * 109.46838 * 209.99598 * 1 2 3 34 34 H 1.08999 * 109.47417 * 329.99757 * 1 2 3 35 35 H 1.08002 * 119.96329 * 0.02562 * 3 2 1 36 36 H 1.08000 * 120.03603 * 179.97438 * 4 3 2 37 37 H 0.96991 * 119.99766 * 31.05707 * 6 5 4 38 38 H 1.08003 * 119.99815 * 170.32470 * 12 9 7 39 39 H 1.08000 * 125.28359 * 359.97438 * 14 13 12 40 40 H 0.97008 * 120.00153 * 185.01414 * 19 18 16 41 41 H 1.08002 * 120.02081 * 359.97438 * 25 24 15 42 42 H 1.08001 * 119.70570 * 179.97438 * 26 25 24 43 43 H 1.07998 * 119.88278 * 179.97438 * 27 26 25 44 44 H 1.07999 * 120.15628 * 179.97438 * 28 27 26 45 45 H 1.08005 * 120.03485 * 179.70372 * 30 5 4 46 46 H 1.08002 * 119.96946 * 180.25686 * 31 30 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 -0.0005 5 6 4.2739 0.0001 -0.0005 6 7 5.6724 0.0002 -0.0016 7 6 6.3459 -1.0001 -0.6036 8 8 5.7438 -1.8325 -1.2562 9 6 7.8055 -1.0854 -0.4723 10 6 8.5282 -0.0354 0.1804 11 7 9.1013 0.7973 0.7006 12 6 8.4837 -2.1815 -0.9797 13 6 7.7644 -3.3067 -1.4376 14 6 6.7397 -3.9604 -0.7791 15 7 6.3038 -4.9959 -1.5381 16 6 5.2982 -5.8539 -1.1829 17 1 4.6940 -6.3227 -1.9454 18 6 5.0548 -6.1221 0.1601 19 7 5.7597 -5.5183 1.0882 20 14 3.7245 -7.3415 0.6428 21 1 4.3104 -8.7030 0.7335 22 1 3.1564 -6.9584 1.9602 23 1 2.6494 -7.3325 -0.3816 24 6 7.0135 -5.0606 -2.7254 25 6 6.9504 -5.9149 -3.8203 26 6 7.8054 -5.7317 -4.8871 27 6 8.7319 -4.7007 -4.8797 28 6 8.8088 -3.8432 -3.8017 29 6 7.9520 -4.0177 -2.7201 30 6 3.5780 -1.2019 -0.0058 31 6 2.1970 -1.1984 0.0006 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3633 -0.8901 0.5138 34 1 -0.3634 0.8899 0.5139 35 1 1.6550 2.1328 0.0004 36 1 4.1161 2.1384 -0.0010 37 1 6.1576 0.7200 0.4310 38 1 9.5628 -2.1754 -1.0249 39 1 6.3489 -3.6901 0.1907 40 1 5.6407 -5.7582 2.0206 41 1 6.2324 -6.7215 -3.8356 42 1 7.7531 -6.3981 -5.7354 43 1 9.3961 -4.5681 -5.7210 44 1 9.5314 -3.0406 -3.7972 45 1 4.1162 -2.1382 -0.0106 46 1 1.6551 -2.1327 0.0008 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059335557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:00 Heat of formation + Delta-G solvation = 98.159817 kcal Electronic energy + Delta-G solvation = -32612.291371 eV Core-core repulsion = 28432.724665 eV Total energy + Delta-G solvation = -4179.566707 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 371.137 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.59395 -40.02439 -38.36381 -36.42625 -36.22700 -34.91836 -33.86342 -32.76125 -31.48042 -30.70209 -30.50311 -28.96083 -27.89876 -26.56984 -25.45751 -23.43367 -22.74247 -21.87810 -21.62244 -20.79710 -20.47398 -18.90660 -18.31935 -17.86684 -17.24999 -15.99090 -15.50070 -15.23163 -15.14854 -14.95257 -14.62587 -14.46440 -14.14806 -14.03442 -13.76195 -13.62815 -13.39605 -13.22983 -13.20757 -13.07034 -12.98016 -12.88820 -12.30617 -12.18312 -12.06396 -12.00149 -11.93881 -11.63954 -11.58507 -11.41344 -11.20828 -10.98665 -10.88191 -10.76273 -10.53680 -10.20868 -9.91805 -9.74108 -9.26206 -8.98458 -8.66911 -8.37375 -7.67422 -7.39993 -7.03460 -6.54436 -4.63820 1.02027 1.56123 1.65997 2.00892 2.48504 2.88027 2.91582 2.96338 3.01596 3.11867 3.44488 3.61933 3.78816 3.98951 4.21261 4.45922 4.48941 4.62018 4.79656 4.96609 5.06404 5.22277 5.24781 5.41011 5.53058 5.61301 5.64050 5.64614 5.69654 5.77150 5.92289 5.97251 6.00630 6.07488 6.18676 6.25141 6.33774 6.47639 6.54619 6.63022 6.67930 6.79375 6.80930 6.83911 6.86219 6.89302 6.92863 7.21482 7.30577 7.34178 7.37584 7.69254 7.76534 7.80005 7.91939 8.21281 8.63598 8.66871 9.06807 10.01347 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.006496 B = 0.004156 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4309.504862 B = 6735.326676 C = 9020.104455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.116 4.116 3 C -0.104 4.104 4 C -0.154 4.154 5 C 0.159 3.841 6 N -0.682 5.682 7 C 0.576 3.424 8 O -0.488 6.488 9 C -0.247 4.247 10 C 0.273 3.727 11 N -0.467 5.467 12 C 0.177 3.823 13 C -0.297 4.297 14 C 0.207 3.793 15 N -0.265 5.265 16 C -0.338 4.338 17 H 0.111 0.889 18 C 0.046 3.954 19 N -0.845 5.845 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.262 1.262 24 C 0.049 3.951 25 C -0.095 4.095 26 C -0.144 4.144 27 C -0.144 4.144 28 C -0.104 4.104 29 C -0.052 4.052 30 C -0.114 4.114 31 C -0.097 4.097 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.402 0.598 38 H 0.121 0.879 39 H 0.180 0.820 40 H 0.286 0.714 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.145 0.855 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 5.127 -1.807 6.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.117 4.117 3 C -0.123 4.123 4 C -0.175 4.175 5 C 0.064 3.936 6 N -0.327 5.327 7 C 0.366 3.634 8 O -0.362 6.362 9 C -0.256 4.256 10 C -0.038 4.038 11 N -0.145 5.145 12 C 0.152 3.848 13 C -0.302 4.302 14 C 0.058 3.942 15 N 0.076 4.924 16 C -0.466 4.466 17 H 0.129 0.871 18 C -0.164 4.164 19 N -0.475 5.475 20 Si 0.765 3.235 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.186 1.186 24 C -0.055 4.055 25 C -0.115 4.115 26 C -0.164 4.164 27 C -0.163 4.163 28 C -0.122 4.122 29 C -0.055 4.055 30 C -0.134 4.134 31 C -0.116 4.116 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.237 0.763 38 H 0.139 0.861 39 H 0.197 0.803 40 H 0.097 0.903 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.162 0.838 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.948 5.524 -1.213 6.898 hybrid contribution -0.413 -0.463 0.398 0.737 sum -4.361 5.061 -0.815 6.730 Atomic orbital electron populations 1.20713 0.91598 1.02265 1.01923 1.19830 0.95831 0.93219 1.02775 1.20684 0.93240 0.97309 1.01049 1.20804 0.94485 0.96302 1.05895 1.17737 0.82664 0.93980 0.99230 1.43586 1.04452 1.27621 1.57021 1.17647 0.86480 0.80629 0.78615 1.90962 1.68336 1.38805 1.38085 1.17585 0.91451 0.95335 1.21253 1.25790 0.93295 0.92638 0.92106 1.81231 1.08615 1.11484 1.13187 1.20909 0.97631 0.86491 0.79742 1.17691 1.09286 1.04109 0.99149 1.22776 0.90443 0.83920 0.97064 1.39992 1.22407 1.19238 1.10719 1.19970 1.09448 1.23758 0.93403 0.87141 1.25585 0.98297 0.97434 0.95049 1.69705 1.37776 1.37628 1.02427 0.85661 0.79582 0.79380 0.78834 1.19445 1.19865 1.18574 1.18520 0.96699 0.99396 0.90847 1.20040 1.00347 0.98787 0.92306 1.20505 0.98121 0.99758 0.98007 1.20666 1.00354 0.97071 0.98231 1.20229 0.99064 0.99756 0.93174 1.18793 0.96925 0.95161 0.94668 1.21348 0.94138 0.98207 0.99676 1.20944 0.93756 0.97446 0.99461 0.91612 0.91807 0.92035 0.86290 0.86235 0.76278 0.86124 0.80341 0.90301 0.87002 0.87076 0.87264 0.87228 0.83759 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.00 0.36 -0.73 16 2 C -0.12 -1.53 5.88 -104.59 -0.62 -2.14 16 3 C -0.10 -1.32 9.69 -39.61 -0.38 -1.70 16 4 C -0.15 -2.10 9.96 -39.39 -0.39 -2.50 16 5 C 0.16 2.56 6.32 -83.72 -0.53 2.03 16 6 N -0.68 -10.83 5.30 -11.01 -0.06 -10.89 16 7 C 0.58 10.48 7.08 -12.80 -0.09 10.39 16 8 O -0.49 -10.40 10.07 5.19 0.05 -10.35 16 9 C -0.25 -4.17 5.87 -104.40 -0.61 -4.78 16 10 C 0.27 4.42 14.20 -22.44 -0.32 4.10 16 11 N -0.47 -7.99 18.54 41.87 0.78 -7.21 16 12 C 0.18 3.04 9.70 -38.36 -0.37 2.67 16 13 C -0.30 -6.09 4.62 -104.86 -0.48 -6.58 16 14 C 0.21 4.71 6.87 -15.89 -0.11 4.60 16 15 N -0.27 -6.27 2.87 -59.09 -0.17 -6.44 16 16 C -0.34 -7.96 9.83 -14.98 -0.15 -8.11 16 17 H 0.11 2.49 7.83 -52.49 -0.41 2.08 16 18 C 0.05 1.04 5.45 -17.48 -0.10 0.95 16 19 N -0.84 -19.66 10.77 55.50 0.60 -19.06 16 20 Si 0.94 17.45 29.56 -169.99 -5.02 12.43 16 21 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 22 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 23 H -0.26 -4.77 7.11 56.52 0.40 -4.36 16 24 C 0.05 1.10 6.72 -83.80 -0.56 0.53 16 25 C -0.10 -1.86 9.91 -39.40 -0.39 -2.25 16 26 C -0.14 -2.44 10.02 -39.55 -0.40 -2.84 16 27 C -0.14 -2.37 10.04 -39.54 -0.40 -2.77 16 28 C -0.10 -1.85 10.09 -39.37 -0.40 -2.25 16 29 C -0.05 -1.07 6.33 -104.88 -0.66 -1.74 16 30 C -0.11 -1.99 8.66 -39.39 -0.34 -2.33 16 31 C -0.10 -1.49 9.69 -39.61 -0.38 -1.87 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.40 5.58 7.70 -40.82 -0.31 5.27 16 38 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 39 H 0.18 4.27 6.17 -52.49 -0.32 3.94 16 40 H 0.29 6.21 8.31 -40.82 -0.34 5.87 16 41 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 42 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 43 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.14 2.92 6.28 -52.48 -0.33 2.60 16 46 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 400.45 15.07 6.03 6.03 Total: -1.00 -26.53 400.45 -10.27 -36.80 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -5.16 Total: 16.00 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -7.32 Total: -17.31 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 1.15 Total: -43.60 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.05 Total: -10.35 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.02 Total: 12.43 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -26.53 -10.27 -36.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059335557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.959 kcal (2) G-P(sol) polarization free energy of solvation -26.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds