Wall clock time and date at job start Tue Mar 31 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38338 * 119.87128 * 2 1 4 4 C 1.37943 * 120.18224 * 179.74123 * 3 2 1 5 5 C 1.39612 * 119.89568 * 0.51195 * 4 3 2 6 6 C 1.47822 * 120.12914 * 179.74504 * 5 4 3 7 7 O 1.21575 * 119.99850 * 239.24694 * 6 5 4 8 8 N 1.34770 * 120.00285 * 59.24575 * 6 5 4 9 9 C 1.46505 * 119.99991 * 1.09972 * 8 6 5 10 10 C 1.50696 * 109.47453 * 262.40071 * 9 8 6 11 11 H 1.07997 * 120.00399 * 204.27477 * 10 9 8 12 12 C 1.37882 * 119.99590 * 24.27782 * 10 9 8 13 13 N 1.31513 * 120.00220 * 351.30079 * 12 10 9 14 14 Si 1.86804 * 119.99889 * 171.30314 * 12 10 9 15 15 H 1.48499 * 109.46920 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46761 * 119.99659 * 14 12 10 17 17 H 1.48498 * 109.46962 * 239.99577 * 14 12 10 18 18 C 1.40023 * 120.00339 * 181.09817 * 8 6 5 19 19 C 1.38863 * 120.02404 * 173.04783 * 18 8 6 20 20 C 1.38129 * 120.03812 * 179.78065 * 19 18 8 21 21 C 1.38720 * 120.15840 * 0.55845 * 20 19 18 22 22 C 1.38997 * 119.93664 * 359.62975 * 21 20 19 23 23 C 1.38644 * 119.88995 * 0.11894 * 22 21 20 24 24 O 1.36119 * 120.78046 * 180.26715 * 22 21 20 25 25 C 1.43169 * 116.72903 * 342.79559 * 24 22 21 26 26 C 1.53467 * 108.24486 * 46.19879 * 25 24 22 27 27 O 1.36204 * 119.31046 * 179.54033 * 21 20 19 28 28 C 1.39532 * 119.73579 * 359.46541 * 5 4 3 29 29 C 1.38209 * 119.82711 * 0.27854 * 28 5 4 30 30 F 1.35099 * 119.95516 * 180.02562 * 29 28 5 31 31 H 1.08997 * 109.47605 * 270.02764 * 1 2 3 32 32 H 1.09005 * 109.46760 * 30.02523 * 1 2 3 33 33 H 1.08999 * 109.47158 * 150.01677 * 1 2 3 34 34 H 1.08003 * 119.90843 * 0.02562 * 3 2 1 35 35 H 1.07996 * 120.05093 * 180.25385 * 4 3 2 36 36 H 1.09003 * 109.47052 * 142.40133 * 9 8 6 37 37 H 1.08997 * 109.47040 * 22.40522 * 9 8 6 38 38 H 0.96995 * 120.00049 * 180.02562 * 13 12 10 39 39 H 1.07997 * 119.98152 * 0.04262 * 19 18 8 40 40 H 1.07993 * 119.92007 * 180.27016 * 20 19 18 41 41 H 1.07989 * 119.98882 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.70410 * 165.88051 * 25 24 22 43 43 H 1.08998 * 109.71020 * 286.51001 * 25 24 22 44 44 H 1.08999 * 109.71776 * 59.91144 * 26 25 24 45 45 H 1.08997 * 109.71634 * 180.54761 * 26 25 24 46 46 H 1.08003 * 120.09280 * 180.25666 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1996 0.0000 4 6 3.5754 1.2071 0.0054 5 6 4.2778 0.0006 0.0000 6 6 5.7560 0.0026 0.0001 7 8 6.3647 -0.5309 -0.9071 8 7 6.4291 0.5959 1.0057 9 6 5.6960 1.2178 2.1112 10 6 5.5821 2.7005 1.8674 11 1 5.4423 3.3754 2.6988 12 6 5.6563 3.1955 0.5826 13 7 5.9957 2.4016 -0.4094 14 14 5.2748 4.9939 0.2511 15 1 4.9211 5.6680 1.5261 16 1 6.4666 5.6513 -0.3429 17 1 4.1332 5.0918 -0.6934 18 6 7.8291 0.6179 0.9941 19 6 8.5205 1.3507 1.9497 20 6 9.9016 1.3690 1.9413 21 6 10.6020 0.6656 0.9722 22 6 9.9127 -0.0658 0.0120 23 6 8.5265 -0.0881 0.0239 24 8 10.5827 -0.7666 -0.9435 25 6 11.9567 -0.4218 -1.1503 26 6 12.6362 -0.3119 0.2214 27 8 11.9635 0.7032 0.9744 28 6 3.5790 -1.2071 0.0006 29 6 2.1969 -1.2016 0.0005 30 9 1.5177 -2.3695 0.0016 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3633 -0.8901 -0.5136 34 1 1.6524 2.1328 0.0004 35 1 4.1111 2.1448 0.0095 36 1 6.2301 1.0431 3.0452 37 1 4.6987 0.7826 2.1762 38 1 6.0482 2.7500 -1.3131 39 1 7.9781 1.9033 2.7026 40 1 10.4374 1.9360 2.6880 41 1 7.9894 -0.6554 -0.7217 42 1 12.4451 -1.1966 -1.7413 43 1 12.0217 0.5339 -1.6703 44 1 12.5652 -1.2655 0.7445 45 1 13.6838 -0.0401 0.0921 46 1 4.1166 -2.1439 0.0006 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065502496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:46 Heat of formation + Delta-G solvation = -47.354302 kcal Electronic energy + Delta-G solvation = -34707.526891 eV Core-core repulsion = 30058.588243 eV Total energy + Delta-G solvation = -4648.938648 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.54787 -40.70611 -39.86338 -38.14805 -36.71373 -36.50287 -35.11099 -32.66743 -32.33687 -30.42925 -29.93988 -29.78443 -27.84548 -27.78583 -26.54562 -24.21570 -23.22008 -22.54245 -22.08593 -21.88621 -20.33978 -19.30529 -18.01612 -17.56245 -17.19749 -16.48500 -16.19949 -16.05541 -15.60385 -15.43939 -15.29878 -15.01425 -14.82182 -14.58474 -14.49520 -13.93102 -13.80731 -13.65695 -13.29673 -13.21762 -13.09042 -12.91853 -12.70267 -12.55779 -12.53184 -12.10927 -12.00226 -11.89296 -11.49049 -11.20743 -11.10466 -11.04283 -10.93956 -10.74964 -10.70098 -10.66902 -10.34064 -10.13559 -9.96214 -8.82422 -8.61029 -8.47814 -8.30517 -7.99701 -7.71161 -6.84909 -6.08148 -4.54996 1.42236 1.71102 2.09666 2.15585 3.05522 3.18860 3.19956 3.48731 3.55473 3.69485 4.06105 4.13509 4.16731 4.56088 4.62419 4.77457 4.80849 5.00472 5.02015 5.08691 5.12645 5.31268 5.40195 5.45151 5.55008 5.63986 5.68334 5.77821 5.88949 5.93809 5.98909 6.08389 6.24545 6.27642 6.43816 6.45947 6.53617 6.61164 6.71462 6.79545 6.91531 6.96319 7.09562 7.16057 7.29026 7.42841 7.49724 7.53117 7.70230 7.85214 8.19004 8.35614 8.65803 9.09465 9.24829 10.54017 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.011298 B = 0.003481 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.644655 B = 8041.031385 C = 9662.212089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.114 4.114 3 C -0.115 4.115 4 C -0.073 4.073 5 C -0.077 4.077 6 C 0.616 3.384 7 O -0.544 6.544 8 N -0.488 5.488 9 C 0.215 3.785 10 C -0.540 4.540 11 H 0.074 0.926 12 C 0.068 3.932 13 N -0.866 5.866 14 Si 0.889 3.111 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.278 1.278 18 C 0.226 3.774 19 C -0.148 4.148 20 C -0.096 4.096 21 C -0.010 4.010 22 C 0.064 3.936 23 C -0.176 4.176 24 O -0.309 6.309 25 C 0.022 3.978 26 C 0.024 3.976 27 O -0.316 6.316 28 C -0.121 4.121 29 C 0.071 3.929 30 F -0.146 7.146 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.127 0.873 35 H 0.186 0.814 36 H 0.036 0.964 37 H 0.040 0.960 38 H 0.271 0.729 39 H 0.139 0.861 40 H 0.124 0.876 41 H 0.189 0.811 42 H 0.112 0.888 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.766 -3.607 1.678 4.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.115 4.115 3 C -0.133 4.133 4 C -0.091 4.091 5 C -0.080 4.080 6 C 0.407 3.593 7 O -0.426 6.426 8 N -0.203 5.203 9 C 0.094 3.906 10 C -0.578 4.578 11 H 0.092 0.908 12 C -0.134 4.134 13 N -0.504 5.504 14 Si 0.715 3.285 15 H -0.193 1.193 16 H -0.206 1.206 17 H -0.203 1.203 18 C 0.127 3.873 19 C -0.169 4.169 20 C -0.115 4.115 21 C -0.055 4.055 22 C 0.019 3.981 23 C -0.196 4.196 24 O -0.223 6.223 25 C -0.054 4.054 26 C -0.052 4.052 27 O -0.232 6.232 28 C -0.140 4.140 29 C 0.052 3.948 30 F -0.125 7.125 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.202 0.798 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.157 0.843 40 H 0.142 0.858 41 H 0.205 0.795 42 H 0.130 0.870 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.128 0.872 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.997 -3.917 1.023 4.169 hybrid contribution 0.014 1.021 -0.446 1.114 sum 1.011 -2.896 0.578 3.121 Atomic orbital electron populations 1.20695 0.90842 1.02781 1.02406 1.19994 0.96488 0.92222 1.02844 1.21001 0.94616 0.96405 1.01300 1.23062 0.93343 1.01523 0.91221 1.19659 0.93947 0.92904 1.01482 1.17487 0.86084 0.75346 0.80360 1.90292 1.67617 1.48434 1.36234 1.45066 1.02881 1.49856 1.22474 1.19727 0.92110 0.93717 0.85021 1.21570 1.50747 0.92099 0.93407 0.90763 1.24981 0.93968 0.98299 0.96126 1.69957 1.44487 1.34955 1.01027 0.86568 0.78577 0.84527 0.78786 1.19292 1.20593 1.20312 1.17300 0.83025 0.93485 0.93469 1.20700 0.92429 1.01951 1.01809 1.20017 0.93089 1.01078 0.97344 1.18739 0.81782 1.06082 0.98867 1.18774 0.92095 0.97649 0.89570 1.21897 0.89959 1.04900 1.02824 1.86281 1.23301 1.58184 1.54579 1.23484 0.81972 1.02709 0.97233 1.23434 0.97147 0.92397 0.92244 1.86238 1.16507 1.50579 1.69841 1.21045 0.92027 0.98831 1.02125 1.17195 0.89530 0.80774 1.07266 1.91425 1.80130 1.46480 1.94475 0.91095 0.91263 0.91631 0.85477 0.79772 0.94615 0.94180 0.91818 0.84294 0.85834 0.79543 0.87026 0.91162 0.91318 0.87162 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.83 36.00 0.35 -0.98 16 2 C -0.11 -1.80 5.89 -104.47 -0.62 -2.42 16 3 C -0.12 -1.93 9.68 -39.65 -0.38 -2.31 16 4 C -0.07 -1.46 7.57 -39.18 -0.30 -1.76 16 5 C -0.08 -1.59 4.37 -104.98 -0.46 -2.05 16 6 C 0.62 14.11 4.76 -12.34 -0.06 14.05 16 7 O -0.54 -13.56 13.51 5.30 0.07 -13.49 16 8 N -0.49 -10.88 1.56 -115.78 -0.18 -11.06 16 9 C 0.21 4.50 4.89 -5.19 -0.03 4.48 16 10 C -0.54 -11.94 8.36 -34.44 -0.29 -12.22 16 11 H 0.07 1.63 7.83 -52.49 -0.41 1.21 16 12 C 0.07 1.54 3.19 -17.82 -0.06 1.48 16 13 N -0.87 -20.83 6.89 55.43 0.38 -20.45 16 14 Si 0.89 18.37 29.51 -169.99 -5.02 13.36 16 15 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 18 C 0.23 5.06 5.86 -83.68 -0.49 4.57 16 19 C -0.15 -3.04 8.98 -39.39 -0.35 -3.39 16 20 C -0.10 -1.84 9.95 -39.44 -0.39 -2.23 16 21 C -0.01 -0.20 6.49 -39.12 -0.25 -0.45 16 22 C 0.06 1.34 6.49 -39.15 -0.25 1.09 16 23 C -0.18 -4.01 8.95 -39.23 -0.35 -4.36 16 24 O -0.31 -5.84 10.42 -32.90 -0.34 -6.18 16 25 C 0.02 0.30 7.26 37.40 0.27 0.57 16 26 C 0.02 0.31 7.26 37.40 0.27 0.58 16 27 O -0.32 -5.46 10.42 -33.17 -0.35 -5.80 16 28 C -0.12 -2.24 9.77 -39.11 -0.38 -2.62 16 29 C 0.07 1.22 7.23 -39.47 -0.29 0.93 16 30 F -0.15 -2.38 16.46 2.25 0.04 -2.35 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.06 0.76 7.63 -51.93 -0.40 0.37 16 34 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 35 H 0.19 4.01 2.98 -52.49 -0.16 3.85 16 36 H 0.04 0.70 6.98 -51.93 -0.36 0.34 16 37 H 0.04 0.83 6.11 -51.93 -0.32 0.51 16 38 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 39 H 0.14 2.76 6.08 -52.49 -0.32 2.44 16 40 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 41 H 0.19 4.62 4.54 -56.18 -0.26 4.36 16 42 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.13 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -27.35 370.28 -9.02 -36.37 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -5.15 Total: 11.07 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -4.05 Total: -7.05 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.20 Total: -31.51 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.62 Total: -25.47 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.35 -9.02 -36.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065502496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.981 kcal (2) G-P(sol) polarization free energy of solvation -27.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds