Wall clock time and date at job start Tue Mar 31 2020 05:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00128 * 2 1 4 4 H 1.48500 * 109.47146 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47456 * 300.00128 * 3 2 1 6 6 H 1.48506 * 109.47062 * 60.00535 * 3 2 1 7 7 C 1.37874 * 119.99508 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00356 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47187 * 180.02562 * 9 7 2 11 11 N 1.40058 * 125.87773 * 270.00193 * 10 9 7 12 12 C 1.30254 * 109.69420 * 180.02562 * 11 10 9 13 13 C 1.41160 * 108.47194 * 359.97438 * 12 11 10 14 14 C 1.36318 * 125.86804 * 90.00444 * 10 9 7 15 15 N 1.33191 * 134.61673 * 359.97438 * 14 10 9 16 16 C 1.31503 * 120.68587 * 180.02562 * 15 14 10 17 17 N 1.32131 * 122.64300 * 359.66651 * 16 15 14 18 18 C 1.32862 * 121.19125 * 0.63821 * 17 16 15 19 19 N 1.38108 * 120.81184 * 179.69034 * 18 17 16 20 20 C 1.46504 * 120.00022 * 359.72387 * 19 18 17 21 21 C 1.52995 * 109.47329 * 179.97438 * 20 19 18 22 22 C 1.53004 * 109.47487 * 180.02562 * 21 20 19 23 23 O 1.42893 * 109.47267 * 180.02562 * 22 21 20 24 24 C 1.35956 * 117.00026 * 179.97438 * 23 22 21 25 25 C 1.38657 * 120.06128 * 359.97438 * 24 23 22 26 26 C 1.38184 * 119.96964 * 180.02562 * 25 24 23 27 27 C 1.38265 * 120.09281 * 359.97438 * 26 25 24 28 28 C 1.38248 * 120.12705 * 0.02562 * 27 26 25 29 29 C 1.38332 * 120.03366 * 359.97438 * 28 27 26 30 30 F 1.35103 * 120.05240 * 180.02562 * 29 28 27 31 31 H 0.97001 * 119.99912 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.47043 * 60.00471 * 9 7 2 33 33 H 1.08998 * 109.47668 * 300.00635 * 9 7 2 34 34 H 1.07998 * 125.76004 * 180.02562 * 12 11 10 35 35 H 1.08003 * 118.68091 * 180.02562 * 16 15 14 36 36 H 0.96992 * 120.00250 * 179.71460 * 19 18 17 37 37 H 1.09004 * 109.47195 * 59.99761 * 20 19 18 38 38 H 1.09001 * 109.46985 * 299.99786 * 20 19 18 39 39 H 1.09007 * 109.47098 * 60.00138 * 21 20 19 40 40 H 1.09001 * 109.47491 * 300.00185 * 21 20 19 41 41 H 1.08994 * 109.46599 * 59.99869 * 22 21 20 42 42 H 1.09001 * 109.46881 * 300.00527 * 22 21 20 43 43 H 1.08004 * 120.01774 * 0.03769 * 25 24 23 44 44 H 1.08000 * 119.95526 * 180.27319 * 26 25 24 45 45 H 1.08001 * 119.93128 * 179.97438 * 27 26 25 46 46 H 1.07998 * 119.98480 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 7 2.7363 -4.2366 -1.1354 12 6 3.5487 -5.1878 -0.7723 13 6 3.5855 -5.2305 0.6381 14 6 2.7218 -4.2199 1.1041 15 7 2.5790 -4.0523 2.4177 16 6 3.2319 -4.8156 3.2665 17 7 4.0474 -5.7794 2.8768 18 6 4.2609 -6.0208 1.5879 19 7 5.1198 -7.0262 1.1893 20 6 5.8132 -7.8379 2.1927 21 6 6.6958 -8.8720 1.4909 22 6 7.4195 -9.7201 2.5388 23 8 8.2443 -10.6855 1.8833 24 6 8.9615 -11.5250 2.6766 25 6 8.8734 -11.4211 4.0565 26 6 9.6036 -12.2750 4.8610 27 6 10.4217 -13.2334 4.2919 28 6 10.5124 -13.3404 2.9166 29 6 9.7838 -12.4884 2.1063 30 9 9.8718 -12.5929 0.7622 31 1 -0.4850 0.8401 0.0004 32 1 0.6240 -2.5567 -0.8903 33 1 0.6245 -2.5571 0.8896 34 1 4.1015 -5.8340 -1.4381 35 1 3.0916 -4.6517 4.3248 36 1 5.2639 -7.1950 0.2451 37 1 5.0799 -8.3497 2.8160 38 1 6.4333 -7.1935 2.8159 39 1 7.4292 -8.3605 0.8674 40 1 6.0755 -9.5163 0.8679 41 1 6.6859 -10.2315 3.1619 42 1 8.0398 -9.0760 3.1621 43 1 8.2343 -10.6733 4.5023 44 1 9.5314 -12.1968 5.9357 45 1 10.9916 -13.8992 4.9232 46 1 11.1519 -14.0902 2.4746 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065519964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:29 Heat of formation + Delta-G solvation = 57.376627 kcal Electronic energy + Delta-G solvation = -30791.348566 eV Core-core repulsion = 26211.536893 eV Total energy + Delta-G solvation = -4579.811672 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.150 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.17725 -41.40343 -40.53470 -38.58884 -38.09664 -36.76266 -34.01605 -33.35286 -31.78460 -31.29395 -31.22693 -30.31152 -29.28381 -27.30956 -26.11283 -24.00513 -23.71560 -23.18767 -22.88202 -22.19584 -21.74656 -20.09333 -18.97401 -17.87416 -17.70138 -17.30334 -17.02606 -17.01808 -16.67856 -16.30629 -15.95324 -15.64817 -15.27917 -15.18083 -14.89353 -14.67616 -14.64905 -14.39895 -14.03255 -13.70229 -13.42498 -13.32081 -13.24627 -12.85650 -12.58834 -12.27990 -12.26097 -12.12005 -12.01300 -11.66303 -11.52390 -11.36532 -11.11160 -11.00223 -10.90637 -10.78275 -10.29494 -10.11206 -9.82361 -9.49267 -9.29207 -8.72426 -8.71294 -8.60574 -8.24522 -7.67176 -6.22591 -4.29004 0.58387 0.72249 1.28067 1.91296 2.37275 2.94185 3.03116 3.04531 3.13523 3.23018 3.30081 3.36729 3.73442 4.15098 4.27326 4.30195 4.33923 4.38683 4.44224 4.48209 4.58716 4.66464 4.69587 4.72729 4.82646 4.94784 4.98437 5.01486 5.12880 5.15797 5.25020 5.41630 5.49165 5.51304 5.61269 5.64284 5.67736 5.71746 5.84492 6.11429 6.28671 6.65178 6.76844 6.86958 7.02304 7.09277 7.19589 7.47624 7.71092 7.88655 7.90895 8.21147 8.71009 8.80483 9.36168 10.85730 Molecular weight = 371.15amu Principal moments of inertia in cm(-1) A = 0.022817 B = 0.001337 C = 0.001314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.848994 B =20929.950709 C =21300.137094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.263 3.737 10 N -0.332 5.332 11 N -0.242 5.242 12 C 0.068 3.932 13 C -0.337 4.337 14 C 0.363 3.637 15 N -0.553 5.553 16 C 0.366 3.634 17 N -0.619 5.619 18 C 0.509 3.491 19 N -0.708 5.708 20 C 0.137 3.863 21 C -0.134 4.134 22 C 0.064 3.936 23 O -0.307 6.307 24 C 0.101 3.899 25 C -0.183 4.183 26 C -0.089 4.089 27 C -0.131 4.131 28 C -0.117 4.117 29 C 0.066 3.934 30 F -0.132 7.132 31 H 0.267 0.733 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.183 0.817 35 H 0.195 0.805 36 H 0.411 0.589 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.140 0.860 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.359 -27.417 9.423 34.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.118 5.118 11 N -0.058 5.058 12 C -0.127 4.127 13 C -0.355 4.355 14 C 0.115 3.885 15 N -0.278 5.278 16 C 0.072 3.928 17 N -0.350 5.350 18 C 0.257 3.743 19 N -0.342 5.342 20 C 0.013 3.987 21 C -0.172 4.172 22 C -0.012 4.012 23 O -0.220 6.220 24 C 0.055 3.945 25 C -0.202 4.202 26 C -0.107 4.107 27 C -0.149 4.149 28 C -0.136 4.136 29 C 0.046 3.954 30 F -0.111 7.111 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.200 0.800 35 H 0.212 0.788 36 H 0.247 0.753 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.158 0.842 44 H 0.151 0.849 45 H 0.152 0.848 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 18.357 -26.339 9.136 33.379 hybrid contribution 0.885 0.457 -0.568 1.147 sum 19.242 -25.882 8.567 33.370 Atomic orbital electron populations 1.69929 1.06006 1.27533 1.49419 1.24895 0.94977 0.99364 0.94431 0.86286 0.79931 0.82535 0.77806 1.19717 1.20640 1.20568 1.21289 0.93597 0.89671 1.52643 0.91990 1.19806 0.85690 0.79860 1.00013 1.49475 1.35812 1.27718 0.98796 1.76947 1.11460 1.08046 1.09361 1.23377 0.99106 0.97897 0.92309 1.19611 1.12590 1.07947 0.95358 1.18939 0.91124 0.89905 0.88523 1.67508 1.29355 1.30901 1.00005 1.24411 0.85196 0.83964 0.99192 1.67937 1.26889 1.25642 1.14496 1.17855 0.84152 0.84052 0.88262 1.44170 1.46496 1.34398 1.09096 1.21057 0.94952 0.91938 0.90777 1.21718 0.99440 0.97419 0.98646 1.22718 0.93072 0.89650 0.95757 1.86111 1.56501 1.44699 1.34738 1.19012 0.93632 0.91625 0.90268 1.21252 1.04232 1.03345 0.91329 1.21073 0.95117 0.94198 1.00316 1.20966 1.00407 0.99731 0.93837 1.21059 0.99555 0.99013 0.93956 1.17045 1.01668 0.98903 0.77760 1.91517 1.95169 1.95505 1.28902 0.92309 0.92780 0.92236 0.80035 0.78825 0.75281 0.91046 0.91042 0.89855 0.89875 0.91165 0.91163 0.84216 0.84886 0.84780 0.84044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 3 Si 0.91 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -15.25 9.39 -34.44 -0.32 -15.58 16 8 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 9 C 0.26 7.02 6.19 -5.19 -0.03 6.99 16 10 N -0.33 -7.93 3.63 -61.64 -0.22 -8.15 16 11 N -0.24 -5.17 12.45 30.80 0.38 -4.78 16 12 C 0.07 1.14 11.87 -17.11 -0.20 0.94 16 13 C -0.34 -6.03 6.14 -106.82 -0.66 -6.68 16 14 C 0.36 7.95 8.04 -156.23 -1.26 6.70 16 15 N -0.55 -11.53 10.47 -13.97 -0.15 -11.67 16 16 C 0.37 6.00 12.24 -92.11 -1.13 4.87 16 17 N -0.62 -9.45 9.69 -13.62 -0.13 -9.59 16 18 C 0.51 7.57 7.55 -154.85 -1.17 6.40 16 19 N -0.71 -7.20 5.68 -60.08 -0.34 -7.54 16 20 C 0.14 1.05 5.73 -4.04 -0.02 1.03 16 21 C -0.13 -0.80 5.70 -26.73 -0.15 -0.95 16 22 C 0.06 0.37 4.74 37.16 0.18 0.55 16 23 O -0.31 -2.70 10.00 -19.60 -0.20 -2.89 16 24 C 0.10 0.84 6.69 -39.18 -0.26 0.57 16 25 C -0.18 -1.10 9.04 -39.45 -0.36 -1.45 16 26 C -0.09 -0.43 10.04 -39.59 -0.40 -0.82 16 27 C -0.13 -0.62 10.04 -39.57 -0.40 -1.01 16 28 C -0.12 -0.71 10.02 -39.54 -0.40 -1.11 16 29 C 0.07 0.57 7.31 -39.30 -0.29 0.28 16 30 F -0.13 -1.37 17.11 2.25 0.04 -1.33 16 31 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.05 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.18 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.20 2.37 8.06 -52.48 -0.42 1.94 16 36 H 0.41 3.31 8.34 -40.82 -0.34 2.97 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.33 7.66 -51.93 -0.40 -0.07 16 42 H 0.07 0.34 7.66 -51.93 -0.40 -0.06 16 43 H 0.14 0.58 6.30 -52.48 -0.33 0.25 16 44 H 0.13 0.33 8.06 -52.49 -0.42 -0.09 16 45 H 0.13 0.30 8.06 -52.49 -0.42 -0.12 16 46 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 LS Contribution 404.61 15.07 6.10 6.10 Total: -1.00 -35.06 404.61 -11.43 -46.49 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.66 Total: -0.81 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -6.96 Total: 2.50 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: 0.28 Total: -66.75 kcal Atomic # 8 Polarization: -2.70 SS G_CDS: -0.20 Total: -2.89 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.06 -11.43 -46.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.868 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds