Wall clock time and date at job start Tue Mar 31 2020 06:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47065 * 2 1 4 4 C 1.50697 * 109.47153 * 120.00119 * 2 1 3 5 5 N 1.29949 * 126.28663 * 299.97732 * 4 2 1 6 6 O 1.21299 * 110.24821 * 180.02562 * 5 4 2 7 7 C 1.33643 * 109.81485 * 359.97438 * 6 5 4 8 8 C 1.50699 * 126.54974 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.46913 * 270.01825 * 8 7 6 10 10 C 1.52992 * 109.47277 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47267 * 180.02562 * 10 9 8 12 12 C 1.38115 * 119.99772 * 180.02562 * 11 10 9 13 13 N 1.32850 * 120.81434 * 359.72061 * 12 11 10 14 14 C 1.32133 * 121.19304 * 179.75216 * 13 12 11 15 15 N 1.31507 * 122.64450 * 0.52111 * 14 13 12 16 16 C 1.33197 * 120.67914 * 359.75402 * 15 14 13 17 17 C 1.40816 * 120.80541 * 179.97438 * 12 11 10 18 18 C 1.41166 * 134.70876 * 359.97438 * 17 12 11 19 19 N 1.30253 * 108.47042 * 180.02562 * 18 17 12 20 20 N 1.36316 * 134.60831 * 179.97438 * 16 15 14 21 21 C 1.46496 * 125.87610 * 0.04896 * 20 16 15 22 22 C 1.50704 * 109.47094 * 89.99616 * 21 20 16 23 23 H 1.07995 * 120.00157 * 359.97438 * 22 21 20 24 24 C 1.37878 * 119.99909 * 179.97438 * 22 21 20 25 25 N 1.31517 * 120.00184 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00269 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47071 * 59.99953 * 26 24 22 28 28 H 1.48493 * 109.47232 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47089 * 300.00252 * 26 24 22 30 30 N 1.31130 * 106.89570 * 0.22396 * 7 6 5 31 31 H 1.08993 * 109.47074 * 299.99917 * 1 2 3 32 32 H 1.08996 * 109.47219 * 60.00153 * 1 2 3 33 33 H 1.09004 * 109.46845 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47012 * 240.00189 * 2 1 3 35 35 H 1.09003 * 109.47051 * 60.00213 * 3 2 1 36 36 H 1.09003 * 109.47336 * 179.97438 * 3 2 1 37 37 H 1.08998 * 109.47450 * 299.99769 * 3 2 1 38 38 H 1.08997 * 109.46872 * 150.02518 * 8 7 6 39 39 H 1.08992 * 109.47574 * 30.01929 * 8 7 6 40 40 H 1.09004 * 109.46840 * 59.99974 * 9 8 7 41 41 H 1.09005 * 109.47310 * 300.00364 * 9 8 7 42 42 H 1.09004 * 109.47330 * 60.00123 * 10 9 8 43 43 H 1.09005 * 109.47124 * 300.00327 * 10 9 8 44 44 H 0.96999 * 119.99984 * 359.97438 * 11 10 9 45 45 H 1.08001 * 118.67539 * 180.27865 * 14 13 12 46 46 H 1.07996 * 125.76070 * 0.02562 * 18 17 12 47 47 H 1.08995 * 109.47473 * 209.99594 * 21 20 16 48 48 H 1.08999 * 109.47185 * 330.00042 * 21 20 16 49 49 H 0.96996 * 120.00510 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7953 -0.3744 2.4631 6 8 2.3422 -1.1472 3.2215 7 6 2.9996 -2.0781 2.5234 8 6 3.8071 -3.2189 3.0870 9 6 5.2580 -2.7718 3.2766 10 6 6.0780 -3.9301 3.8481 11 7 7.4672 -3.5019 4.0302 12 6 8.4010 -4.3843 4.5369 13 7 8.0561 -5.6234 4.8697 14 6 8.9443 -6.4752 5.3506 15 7 10.2059 -6.1544 5.5378 16 6 10.6483 -4.9341 5.2394 17 6 9.7409 -3.9909 4.7184 18 6 10.4653 -2.8002 4.4945 19 7 11.7036 -2.9982 4.8466 20 7 11.8574 -4.3091 5.3151 21 6 13.1038 -4.9067 5.8002 22 6 13.8371 -5.5440 4.6482 23 1 13.4165 -5.5079 3.6541 24 6 15.0450 -6.1731 4.8632 25 7 15.5570 -6.2175 6.0738 26 14 15.9543 -6.9625 3.4352 27 1 16.2646 -5.9296 2.4143 28 1 17.2177 -7.5683 3.9270 29 1 15.1032 -8.0176 2.8289 30 7 2.8121 -1.8060 1.2544 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9563 -0.8900 38 1 3.7740 -4.0627 2.3978 39 1 3.3907 -3.5186 4.0486 40 1 5.2911 -1.9279 3.9657 41 1 5.6745 -2.4721 2.3148 42 1 6.0449 -4.7737 3.1587 43 1 5.6617 -4.2303 4.8098 44 1 7.7312 -2.5989 3.7942 45 1 8.6204 -7.4740 5.6036 46 1 10.0610 -1.8805 4.0983 47 1 13.7289 -4.1325 6.2450 48 1 12.8758 -5.6646 6.5496 49 1 16.4065 -6.6605 6.2253 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065519983.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:54 Heat of formation + Delta-G solvation = 166.611611 kcal Electronic energy + Delta-G solvation = -31350.923339 eV Core-core repulsion = 26931.601507 eV Total energy + Delta-G solvation = -4419.321832 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 371.181 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -46.01554 -41.38932 -38.57338 -37.35577 -37.23181 -35.60324 -34.26981 -33.64198 -32.38045 -31.40577 -31.23699 -29.56895 -27.78878 -27.41959 -26.74142 -25.06093 -23.99784 -23.85954 -23.21306 -22.53857 -21.89655 -20.55116 -20.05963 -18.49994 -18.01602 -17.85521 -17.39225 -16.67875 -16.32301 -16.14309 -15.83027 -15.57571 -15.05343 -15.01755 -14.62559 -14.36970 -14.19659 -14.00682 -13.79950 -13.74543 -13.38028 -13.15171 -12.98846 -12.82804 -12.70064 -12.27066 -12.15908 -12.14708 -12.00243 -11.71832 -11.67411 -11.65232 -11.58334 -11.32730 -11.14142 -10.98089 -10.92198 -10.74926 -10.30147 -10.28443 -10.09937 -9.85212 -9.27754 -8.69508 -8.59042 -8.23419 -7.65754 -6.21545 -4.28221 0.70741 1.29590 1.78569 1.92878 2.32919 2.90813 3.00953 3.07668 3.14771 3.26664 3.29761 3.34677 3.57721 4.18335 4.30985 4.33397 4.37654 4.39460 4.45292 4.45477 4.51966 4.64700 4.73738 4.82141 4.95957 4.98402 5.03479 5.03933 5.13743 5.17076 5.19199 5.21140 5.23760 5.31698 5.41630 5.49673 5.52117 5.60078 5.63202 5.68867 5.71692 5.73243 6.30231 6.66364 6.88282 7.02976 7.10136 7.21304 7.48622 7.71725 7.75323 7.89840 7.91845 8.22111 8.71502 8.81745 9.36808 10.86645 Molecular weight = 371.18amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.001373 C = 0.001340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.186459 B =20385.002918 C =20884.821295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.005 4.005 3 C -0.146 4.146 4 C 0.175 3.825 5 N -0.381 5.381 6 O 0.078 5.922 7 C 0.185 3.815 8 C -0.023 4.023 9 C -0.132 4.132 10 C 0.134 3.866 11 N -0.709 5.709 12 C 0.509 3.491 13 N -0.618 5.618 14 C 0.366 3.634 15 N -0.554 5.554 16 C 0.363 3.637 17 C -0.338 4.338 18 C 0.068 3.932 19 N -0.243 5.243 20 N -0.332 5.332 21 C 0.264 3.736 22 C -0.535 4.535 23 H 0.061 0.939 24 C 0.068 3.932 25 N -0.891 5.891 26 Si 0.907 3.093 27 H -0.275 1.275 28 H -0.283 1.283 29 H -0.274 1.274 30 N -0.480 5.480 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.410 0.590 45 H 0.195 0.805 46 H 0.182 0.818 47 H 0.054 0.946 48 H 0.060 0.940 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.454 10.430 -8.396 33.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 C -0.204 4.204 4 C -0.098 4.098 5 N -0.088 5.088 6 O 0.019 5.981 7 C -0.036 4.036 8 C -0.062 4.062 9 C -0.171 4.171 10 C 0.010 3.990 11 N -0.343 5.343 12 C 0.257 3.743 13 N -0.348 5.348 14 C 0.073 3.927 15 N -0.278 5.278 16 C 0.115 3.885 17 C -0.355 4.355 18 C -0.127 4.127 19 N -0.059 5.059 20 N -0.118 5.118 21 C 0.147 3.853 22 C -0.573 4.573 23 H 0.079 0.921 24 C -0.136 4.136 25 N -0.529 5.529 26 Si 0.734 3.266 27 H -0.200 1.200 28 H -0.209 1.209 29 H -0.200 1.200 30 N -0.213 5.213 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.246 0.754 45 H 0.212 0.788 46 H 0.199 0.801 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -29.681 10.510 -8.074 32.505 hybrid contribution 0.308 0.189 -1.007 1.070 sum -29.373 10.699 -9.081 32.553 Atomic orbital electron populations 1.21852 0.92808 1.02597 1.03073 1.19583 0.96463 0.95481 0.90994 1.21855 1.01567 0.93882 1.03074 1.25860 0.96489 0.92796 0.94625 1.74599 1.17529 1.13813 1.02887 1.85313 1.47719 1.29732 1.35318 1.28788 0.94688 0.94130 0.85989 1.20137 0.92129 0.90716 1.03257 1.21813 0.92785 0.99444 1.03096 1.21201 0.80226 0.95991 1.01561 1.44207 1.07618 1.13847 1.68591 1.17859 0.84364 0.87580 0.84522 1.67935 1.38484 1.02448 1.25971 1.24418 0.82698 0.97758 0.87870 1.67516 1.17284 1.17068 1.25952 1.18943 0.87248 0.89464 0.92842 1.19617 0.95559 0.98938 1.21430 1.23364 0.90647 0.97474 1.01240 1.76944 1.17932 0.96851 1.14142 1.49469 1.07640 1.06079 1.48635 1.19790 0.76121 0.93630 0.95749 1.21212 1.05278 1.36565 0.94294 0.92101 1.24888 0.96740 0.95610 0.96352 1.69906 1.19561 1.43098 1.20333 0.86404 0.78786 0.79555 0.81861 1.20034 1.20873 1.19957 1.71935 1.17044 1.14193 1.18118 0.91846 0.90947 0.92278 0.87981 0.91845 0.92204 0.90931 0.86582 0.87293 0.90319 0.90155 0.90866 0.90846 0.75420 0.78826 0.80110 0.92816 0.92237 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.18 37.16 0.34 -0.40 16 2 C -0.01 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.15 -0.79 9.17 37.15 0.34 -0.45 16 4 C 0.18 1.56 6.72 -156.37 -1.05 0.51 16 5 N -0.38 -3.70 12.16 30.90 0.38 -3.32 16 6 O 0.08 0.67 11.31 18.10 0.20 0.87 16 7 C 0.18 1.33 7.77 -13.05 -0.10 1.23 16 8 C -0.02 -0.09 5.84 -27.88 -0.16 -0.25 16 9 C -0.13 -0.59 5.31 -26.73 -0.14 -0.73 16 10 C 0.13 0.90 5.73 -4.05 -0.02 0.88 16 11 N -0.71 -6.79 5.68 -60.08 -0.34 -7.13 16 12 C 0.51 7.37 7.55 -154.85 -1.17 6.20 16 13 N -0.62 -9.22 9.69 -13.62 -0.13 -9.35 16 14 C 0.37 5.92 12.24 -92.11 -1.13 4.80 16 15 N -0.55 -11.46 10.47 -13.96 -0.15 -11.60 16 16 C 0.36 7.89 8.04 -156.23 -1.26 6.63 16 17 C -0.34 -5.95 6.14 -106.82 -0.66 -6.60 16 18 C 0.07 1.12 11.87 -17.11 -0.20 0.92 16 19 N -0.24 -5.14 12.45 30.80 0.38 -4.76 16 20 N -0.33 -7.89 3.63 -61.65 -0.22 -8.11 16 21 C 0.26 7.02 6.19 -5.19 -0.03 6.99 16 22 C -0.53 -15.26 9.39 -34.44 -0.32 -15.58 16 23 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 24 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 25 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 26 Si 0.91 21.65 29.54 -169.99 -5.02 16.63 16 27 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 30 N -0.48 -4.36 11.55 -9.87 -0.11 -4.48 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.41 3.08 8.34 -40.82 -0.34 2.74 16 45 H 0.20 2.34 8.06 -52.49 -0.42 1.91 16 46 H 0.18 2.00 8.06 -52.49 -0.42 1.58 16 47 H 0.05 1.47 8.14 -51.93 -0.42 1.05 16 48 H 0.06 1.66 8.14 -51.93 -0.42 1.23 16 49 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 423.79 15.07 6.39 6.39 Total: -1.00 -35.48 423.79 -10.94 -46.42 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -7.07 Total: -2.16 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -5.98 Total: 5.60 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: 0.54 Total: -73.74 kcal Atomic # 8 Polarization: 0.67 SS G_CDS: 0.20 Total: 0.87 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -35.48 -10.94 -46.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519983.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.028 kcal (2) G-P(sol) polarization free energy of solvation -35.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds