Wall clock time and date at job start Tue Mar 31 2020 05:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00040 * 2 1 4 4 H 1.48504 * 109.46868 * 269.99322 * 3 2 1 5 5 H 1.48500 * 109.47405 * 149.99978 * 3 2 1 6 6 H 1.48494 * 109.47405 * 29.99309 * 3 2 1 7 7 C 1.37873 * 119.99630 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00309 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99996 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.46497 * 119.99776 * 264.50279 * 10 9 7 12 12 C 1.50697 * 109.47019 * 90.00370 * 11 10 9 13 13 C 1.34519 * 125.79137 * 89.71448 * 12 11 10 14 14 C 1.41386 * 106.84134 * 179.88678 * 13 12 11 15 15 C 1.34516 * 106.83927 * 0.37403 * 14 13 12 16 16 O 1.34301 * 108.42141 * 359.76794 * 15 14 13 17 17 C 1.34773 * 120.00004 * 84.50539 * 10 9 7 18 18 O 1.21277 * 119.99940 * 183.71600 * 17 10 9 19 19 C 1.50700 * 120.00060 * 3.71783 * 17 10 9 20 20 H 1.08997 * 109.50629 * 313.87390 * 19 17 10 21 21 C 1.53120 * 109.50469 * 193.79178 * 19 17 10 22 22 C 1.53116 * 109.16285 * 182.40302 * 21 19 17 23 23 C 1.53042 * 109.27641 * 57.65639 * 22 21 19 24 24 N 1.46845 * 109.52555 * 300.81845 * 23 22 21 25 25 C 1.38401 * 111.00264 * 185.83628 * 24 23 22 26 26 N 1.32496 * 119.21346 * 123.68257 * 25 24 23 27 27 C 1.32278 * 120.73816 * 179.71895 * 26 25 24 28 28 C 1.38608 * 119.19463 * 0.54818 * 27 26 25 29 29 C 1.38597 * 118.56061 * 359.73169 * 28 27 26 30 30 N 1.32281 * 119.19787 * 359.97438 * 29 28 27 31 31 C 1.46857 * 111.19431 * 61.74291 * 24 23 22 32 32 H 0.97010 * 120.00049 * 0.02562 * 1 2 3 33 33 H 1.08999 * 109.47032 * 300.00364 * 9 7 2 34 34 H 1.08997 * 109.46963 * 60.00149 * 9 7 2 35 35 H 1.09002 * 109.46914 * 210.00353 * 11 10 9 36 36 H 1.09003 * 109.47139 * 330.00216 * 11 10 9 37 37 H 1.07995 * 126.57448 * 0.02881 * 13 12 11 38 38 H 1.07994 * 126.57774 * 180.12378 * 14 13 12 39 39 H 1.07997 * 125.78776 * 179.74649 * 15 14 13 40 40 H 1.08996 * 109.52361 * 302.31166 * 21 19 17 41 41 H 1.09002 * 109.51876 * 62.49650 * 21 19 17 42 42 H 1.09002 * 109.50369 * 177.59444 * 22 21 19 43 43 H 1.09005 * 109.50719 * 297.67996 * 22 21 19 44 44 H 1.08995 * 109.46261 * 60.83584 * 23 22 21 45 45 H 1.08998 * 109.46107 * 180.80684 * 23 22 21 46 46 H 1.08002 * 120.40170 * 180.25611 * 27 26 25 47 47 H 1.08002 * 120.71592 * 179.70373 * 28 27 26 48 48 H 1.08005 * 120.39949 * 180.02562 * 29 28 27 49 49 H 1.08999 * 109.45743 * 178.24068 * 31 24 23 50 50 H 1.08999 * 109.46131 * 58.27547 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 3.5467 1.4402 0.7000 6 1 1.4466 2.6527 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 7 3.9997 -2.5754 0.0010 11 6 4.3579 -3.2258 1.2639 12 6 3.1473 -3.9202 1.8323 13 6 2.7783 -5.1893 1.5817 14 6 1.5948 -5.4248 2.3186 15 6 1.3068 -4.2830 2.9688 16 8 2.2506 -3.3752 2.6706 17 6 4.1194 -3.2478 -1.1609 18 8 4.4589 -4.4120 -1.1556 19 6 3.8313 -2.5528 -2.4667 20 1 2.9004 -1.9920 -2.3829 21 6 3.7023 -3.5938 -3.5822 22 6 3.4695 -2.8763 -4.9147 23 6 4.6263 -1.9091 -5.1766 24 7 4.7073 -0.9332 -4.0823 25 6 5.6589 0.0353 -4.3509 26 7 5.3017 1.3112 -4.3478 27 6 6.1876 2.2619 -4.5951 28 6 7.4994 1.9086 -4.8704 29 6 7.8374 0.5645 -4.8710 30 7 6.9041 -0.3358 -4.6099 31 6 4.9776 -1.5951 -2.7995 32 1 -0.4851 0.8401 -0.0004 33 1 3.8751 -0.6805 -0.8888 34 1 3.8744 -0.6802 0.8911 35 1 5.1459 -3.9574 1.0851 36 1 4.7121 -2.4758 1.9711 37 1 3.2894 -5.8937 0.9423 38 1 1.0283 -6.3437 2.3498 39 1 0.4601 -4.1234 3.6199 40 1 4.6185 -4.1812 -3.6400 41 1 2.8594 -4.2518 -3.3707 42 1 3.4194 -3.6100 -5.7192 43 1 2.5328 -2.3206 -4.8701 44 1 5.5604 -2.4676 -5.2350 45 1 4.4564 -1.3861 -6.1177 46 1 5.8914 3.3004 -4.5871 47 1 8.2417 2.6644 -5.0804 48 1 8.8509 0.2559 -5.0813 49 1 5.0629 -0.8439 -2.0143 50 1 5.9102 -2.1550 -2.8692 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065609812.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:13 Heat of formation + Delta-G solvation = 61.377431 kcal Electronic energy + Delta-G solvation = -34997.220804 eV Core-core repulsion = 30606.468836 eV Total energy + Delta-G solvation = -4390.751968 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 370.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.89021 -41.33329 -39.78793 -37.97756 -35.31934 -33.89402 -33.74661 -32.65526 -32.26630 -31.41536 -30.57045 -29.85805 -27.79896 -25.73787 -25.12751 -24.61112 -23.57861 -22.57215 -22.36030 -21.07013 -20.35647 -19.65825 -18.57538 -17.67601 -17.51795 -17.14945 -16.71263 -16.27051 -16.02706 -15.62576 -15.58701 -15.04829 -14.78645 -14.56158 -14.31711 -14.20190 -13.93843 -13.86343 -13.53234 -13.08840 -13.03310 -12.95575 -12.52585 -12.47903 -12.21730 -12.19115 -12.08950 -11.76178 -11.42112 -11.21051 -11.14850 -10.93995 -10.81329 -10.70303 -10.55728 -10.37992 -10.25706 -10.20472 -9.68390 -9.54520 -9.53913 -9.30883 -9.13067 -8.61530 -8.50540 -8.04399 -7.76542 -6.11406 -4.11931 0.68521 0.97411 2.29897 3.02369 3.13135 3.28609 3.31780 3.33874 3.38043 3.57955 3.71091 3.91185 4.06362 4.36919 4.42205 4.61656 4.84694 4.92685 4.96413 5.00134 5.13580 5.19858 5.23448 5.29831 5.39892 5.51093 5.53967 5.56709 5.61040 5.70795 5.78105 5.80633 5.87824 5.89940 6.00100 6.04580 6.14439 6.33765 6.35021 6.41228 6.47920 6.51288 6.66577 6.67470 6.69688 6.76925 6.87501 7.09049 7.23102 7.23700 7.50592 7.78944 8.04986 8.06328 8.44684 8.80078 8.96466 9.47871 11.01252 Molecular weight = 370.18amu Principal moments of inertia in cm(-1) A = 0.009715 B = 0.003637 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.593394 B = 7696.818649 C = 9131.066137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.082 3.918 3 Si 0.863 3.137 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.285 1.285 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.202 3.798 10 N -0.588 5.588 11 C 0.199 3.801 12 C -0.012 4.012 13 C -0.199 4.199 14 C -0.226 4.226 15 C -0.036 4.036 16 O -0.156 6.156 17 C 0.533 3.467 18 O -0.560 6.560 19 C -0.104 4.104 20 H 0.128 0.872 21 C -0.099 4.099 22 C -0.116 4.116 23 C 0.069 3.931 24 N -0.471 5.471 25 C 0.494 3.506 26 N -0.489 5.489 27 C 0.157 3.843 28 C -0.240 4.240 29 C 0.156 3.844 30 N -0.543 5.543 31 C 0.082 3.918 32 H 0.265 0.735 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.194 0.806 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.171 0.829 47 H 0.148 0.852 48 H 0.166 0.834 49 H 0.085 0.915 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.526 -0.101 -6.977 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.122 4.122 3 Si 0.689 3.311 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.211 1.211 7 C -0.569 4.569 8 H 0.096 0.904 9 C 0.082 3.918 10 N -0.318 5.318 11 C 0.076 3.924 12 C -0.064 4.064 13 C -0.219 4.219 14 C -0.245 4.245 15 C -0.105 4.105 16 O -0.051 6.051 17 C 0.321 3.679 18 O -0.439 6.439 19 C -0.125 4.125 20 H 0.146 0.854 21 C -0.137 4.137 22 C -0.154 4.154 23 C -0.058 4.058 24 N -0.196 5.196 25 C 0.139 3.861 26 N -0.203 5.203 27 C -0.011 4.011 28 C -0.263 4.263 29 C -0.012 4.012 30 N -0.261 5.261 31 C -0.045 4.045 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.122 0.878 36 H 0.106 0.894 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.211 0.789 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.188 0.812 47 H 0.165 0.835 48 H 0.183 0.817 49 H 0.103 0.897 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.397 -0.724 -6.634 14.079 hybrid contribution 1.286 1.268 -0.179 1.815 sum 13.683 0.544 -6.814 15.295 Atomic orbital electron populations 1.69891 1.06167 1.26949 1.49658 1.24789 0.94637 0.98583 0.94148 0.87044 0.80212 0.84404 0.79401 1.18948 1.19343 1.21128 1.21227 0.88586 0.94943 1.52159 0.90410 1.20053 0.96599 0.77405 0.97768 1.48076 1.63748 1.15649 1.04365 1.19676 0.90287 0.97024 0.85427 1.22805 0.94690 0.92896 0.96024 1.21540 0.98942 0.97034 1.04426 1.21712 0.99972 0.99757 1.03104 1.23890 0.94820 0.87951 1.03859 1.84091 1.30365 1.39514 1.51098 1.20298 0.75990 0.86232 0.85381 1.90588 1.48906 1.16621 1.87784 1.21346 1.01883 0.96992 0.92273 0.85424 1.21388 1.02921 0.96737 0.92625 1.21629 0.98699 0.97508 0.97566 1.22114 0.99123 0.92533 0.92054 1.59078 1.42269 1.13965 1.04324 1.21130 0.85633 0.89422 0.89870 1.68191 1.37853 1.00716 1.13574 1.23294 0.88806 0.99390 0.89600 1.22893 0.99362 0.98873 1.05125 1.23090 0.98663 0.89064 0.90371 1.68616 1.02758 1.40388 1.14359 1.22068 0.96884 0.96522 0.88977 0.92535 0.94526 0.94898 0.87844 0.89443 0.83891 0.84280 0.78878 0.91384 0.90970 0.90819 0.90307 0.92972 0.91069 0.81215 0.83461 0.81718 0.89701 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.86 20.64 27.47 -169.99 -4.67 15.97 16 4 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.53 -14.21 9.16 -34.44 -0.32 -14.53 16 8 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 9 C 0.20 4.53 3.89 -5.19 -0.02 4.51 16 10 N -0.59 -11.97 2.45 -176.44 -0.43 -12.40 16 11 C 0.20 3.63 5.95 -5.20 -0.03 3.60 16 12 C -0.01 -0.24 6.90 -35.62 -0.25 -0.49 16 13 C -0.20 -3.79 10.81 -39.70 -0.43 -4.22 16 14 C -0.23 -3.94 10.91 -39.70 -0.43 -4.38 16 15 C -0.04 -0.64 12.09 29.42 0.36 -0.29 16 16 O -0.16 -3.25 10.65 5.70 0.06 -3.19 16 17 C 0.53 10.72 6.85 -10.99 -0.08 10.65 16 18 O -0.56 -11.82 15.56 5.56 0.09 -11.74 16 19 C -0.10 -1.91 1.85 -91.69 -0.17 -2.08 16 20 H 0.13 2.73 6.86 -51.93 -0.36 2.37 16 21 C -0.10 -1.57 4.72 -26.61 -0.13 -1.70 16 22 C -0.12 -1.58 6.09 -26.65 -0.16 -1.74 16 23 C 0.07 0.96 5.18 -3.83 -0.02 0.94 16 24 N -0.47 -7.82 4.71 -175.42 -0.83 -8.65 16 25 C 0.49 7.82 6.25 -322.82 -2.02 5.80 16 26 N -0.49 -7.70 10.47 -13.93 -0.15 -7.85 16 27 C 0.16 1.73 11.30 -17.22 -0.19 1.54 16 28 C -0.24 -2.06 10.16 -39.31 -0.40 -2.46 16 29 C 0.16 1.55 11.30 -17.23 -0.19 1.35 16 30 N -0.54 -7.47 9.71 -13.93 -0.14 -7.60 16 31 C 0.08 1.42 4.31 -3.83 -0.02 1.40 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.04 0.81 4.03 -51.93 -0.21 0.60 16 34 H 0.03 0.74 6.89 -51.93 -0.36 0.38 16 35 H 0.10 1.71 7.48 -51.93 -0.39 1.32 16 36 H 0.09 1.42 7.86 -51.93 -0.41 1.01 16 37 H 0.14 2.64 8.06 -52.49 -0.42 2.22 16 38 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 39 H 0.19 2.70 8.06 -52.49 -0.42 2.27 16 40 H 0.07 1.08 7.87 -51.93 -0.41 0.67 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.05 0.72 7.91 -51.93 -0.41 0.31 16 45 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 46 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 48 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 49 H 0.08 1.57 5.80 -51.93 -0.30 1.27 16 50 H 0.05 0.85 8.10 -51.93 -0.42 0.42 16 LS Contribution 408.97 15.07 6.16 6.16 Total: -1.00 -34.47 408.97 -10.79 -45.26 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.08 Total: 9.56 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -4.59 Total: 0.09 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -0.77 Total: -62.12 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.15 Total: -14.93 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.47 -10.79 -45.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065609812.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.641 kcal (2) G-P(sol) polarization free energy of solvation -34.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds