Wall clock time and date at job start Tue Mar 31 2020 05:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00077 * 2 1 4 4 H 1.48494 * 109.47274 * 95.01966 * 3 2 1 5 5 H 1.48504 * 109.47291 * 215.02106 * 3 2 1 6 6 H 1.48502 * 109.46908 * 335.02079 * 3 2 1 7 7 C 1.37876 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00205 * 189.88269 * 7 2 1 9 9 C 1.50705 * 120.00251 * 9.87609 * 7 2 1 10 10 N 1.46491 * 109.47274 * 183.71540 * 9 7 2 11 11 C 1.46509 * 119.99844 * 275.60440 * 10 9 7 12 12 C 1.50700 * 109.46621 * 94.74375 * 11 10 9 13 13 C 1.34518 * 125.78985 * 90.00659 * 12 11 10 14 14 C 1.41382 * 106.84131 * 179.97438 * 13 12 11 15 15 C 1.34523 * 106.84051 * 359.97438 * 14 13 12 16 16 O 1.34302 * 108.41681 * 359.74050 * 15 14 13 17 17 C 1.34781 * 120.00524 * 95.60811 * 10 9 7 18 18 O 1.21278 * 119.99779 * 185.72877 * 17 10 9 19 19 C 1.50699 * 119.99591 * 5.72777 * 17 10 9 20 20 H 1.08999 * 109.50604 * 39.61533 * 19 17 10 21 21 C 1.53123 * 109.50007 * 159.73082 * 19 17 10 22 22 C 1.53122 * 109.15638 * 177.59197 * 21 19 17 23 23 C 1.53034 * 109.28063 * 302.34668 * 22 21 19 24 24 N 1.46839 * 109.52356 * 59.17970 * 23 22 21 25 25 C 1.38407 * 111.00027 * 174.15897 * 24 23 22 26 26 N 1.32501 * 119.21662 * 119.43447 * 25 24 23 27 27 C 1.32276 * 120.73601 * 179.71986 * 26 25 24 28 28 C 1.38599 * 119.20218 * 0.54665 * 27 26 25 29 29 C 1.38609 * 118.55899 * 359.72839 * 28 27 26 30 30 N 1.32280 * 119.19251 * 0.02562 * 29 28 27 31 31 C 1.46843 * 111.19918 * 298.25831 * 24 23 22 32 32 H 0.97003 * 119.99658 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46886 * 303.71229 * 9 7 2 34 34 H 1.08994 * 109.46867 * 63.70726 * 9 7 2 35 35 H 1.08994 * 109.47495 * 214.74303 * 11 10 9 36 36 H 1.08999 * 109.46988 * 334.74840 * 11 10 9 37 37 H 1.07995 * 126.57479 * 0.02947 * 13 12 11 38 38 H 1.07994 * 126.58296 * 180.02562 * 14 13 12 39 39 H 1.07992 * 125.78885 * 179.97438 * 15 14 13 40 40 H 1.08998 * 109.52221 * 297.49863 * 21 19 17 41 41 H 1.09006 * 109.52259 * 57.69047 * 21 19 17 42 42 H 1.08998 * 109.49770 * 182.40289 * 22 21 19 43 43 H 1.09001 * 109.53608 * 62.31233 * 22 21 19 44 44 H 1.09004 * 109.46063 * 299.16102 * 23 22 21 45 45 H 1.09000 * 109.45910 * 179.19796 * 23 22 21 46 46 H 1.08003 * 120.39465 * 180.25336 * 27 26 25 47 47 H 1.07995 * 120.72306 * 179.75224 * 28 27 26 48 48 H 1.07991 * 120.40195 * 179.97438 * 29 28 27 49 49 H 1.09005 * 109.46296 * 301.72046 * 31 24 23 50 50 H 1.09006 * 109.46590 * 181.75812 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6027 1.9852 1.3946 5 1 3.4896 1.4731 -0.8035 6 1 1.3975 2.6810 -0.5913 7 6 2.0045 -1.1940 -0.0005 8 1 3.0726 -1.2010 0.1600 9 6 1.2678 -2.4894 -0.2250 10 7 2.2006 -3.6111 -0.0916 11 6 3.0167 -4.0251 -1.2358 12 6 4.3648 -3.3559 -1.1595 13 6 5.4534 -3.8476 -0.5410 14 6 6.4878 -2.9001 -0.7173 15 6 5.9696 -1.8862 -1.4336 16 8 4.6851 -2.1706 -1.7037 17 6 2.3081 -4.2623 1.0835 18 8 3.1522 -5.1214 1.2257 19 6 1.3793 -3.9228 2.2207 20 1 0.3762 -3.7484 1.8316 21 6 1.3467 -5.0841 3.2182 22 6 0.4484 -4.7069 4.3994 23 6 0.9750 -3.4232 5.0449 24 7 0.9860 -2.3427 4.0507 25 6 1.3331 -1.1361 4.6332 26 7 2.4160 -0.5011 4.2093 27 6 2.7725 0.6565 4.7410 28 6 2.0045 1.1977 5.7599 29 6 0.8813 0.5044 6.1829 30 7 0.5779 -0.6463 5.6054 31 6 1.8789 -2.6619 2.9294 32 1 -0.4850 -0.8401 0.0004 33 1 0.4729 -2.5881 0.5144 34 1 0.8358 -2.4930 -1.2256 35 1 3.1467 -5.1071 -1.2168 36 1 2.5189 -3.7351 -2.1610 37 1 5.5238 -4.7865 -0.0120 38 1 7.5000 -2.9761 -0.3485 39 1 6.4980 -0.9965 -1.7425 40 1 0.9505 -5.9738 2.7287 41 1 2.3563 -5.2841 3.5775 42 1 0.4551 -5.5126 5.1334 43 1 -0.5699 -4.5452 4.0458 44 1 1.9880 -3.5900 5.4113 45 1 0.3293 -3.1441 5.8775 46 1 3.6540 1.1713 4.3885 47 1 2.2751 2.1393 6.2142 48 1 0.2619 0.8985 6.9749 49 1 2.8877 -2.8322 3.3056 50 1 1.8898 -1.8297 2.2254 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065609814.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:16 Heat of formation + Delta-G solvation = 53.069372 kcal Electronic energy + Delta-G solvation = -35785.814677 eV Core-core repulsion = 31394.702444 eV Total energy + Delta-G solvation = -4391.112233 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 370.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.96710 -41.02553 -39.70627 -37.87942 -35.36701 -33.76414 -33.50751 -32.93054 -32.34401 -31.26833 -30.24359 -29.76895 -26.85861 -25.79229 -24.95509 -24.48262 -23.09577 -22.77208 -22.26389 -21.15197 -20.43310 -19.76479 -18.57203 -17.62814 -17.28298 -16.93968 -16.85139 -16.38825 -15.70029 -15.39666 -15.12603 -14.96975 -14.79875 -14.54456 -14.18048 -13.95741 -13.76064 -13.59539 -13.44643 -13.24922 -13.10341 -12.68041 -12.60350 -12.37190 -12.24375 -12.20107 -12.10066 -11.68917 -11.27268 -11.19167 -10.88838 -10.78822 -10.76201 -10.60315 -10.55707 -10.33786 -10.16570 -10.13328 -9.84356 -9.41520 -9.30692 -9.17720 -8.90356 -8.41205 -8.12125 -8.03512 -7.73717 -6.44652 -4.15446 1.17718 1.36601 2.23076 3.01566 3.15209 3.37068 3.41126 3.46700 3.57481 3.65224 3.89879 4.00258 4.40988 4.47501 4.77193 4.86869 5.01690 5.02697 5.12404 5.20965 5.26001 5.26703 5.30797 5.34043 5.44628 5.50234 5.54415 5.60969 5.73931 5.75851 5.86724 5.89056 5.90664 5.97177 6.07472 6.16596 6.25067 6.28644 6.35262 6.43623 6.47760 6.58502 6.61567 6.76471 6.86916 6.99623 7.02502 7.10758 7.28353 7.54143 7.72972 7.90489 8.07690 8.42220 8.46468 8.74406 8.81476 9.50761 10.91793 Molecular weight = 370.18amu Principal moments of inertia in cm(-1) A = 0.007940 B = 0.004737 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3525.392416 B = 5909.195130 C = 7490.030026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.032 3.968 3 Si 1.060 2.940 4 H -0.289 1.289 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.603 4.603 8 H 0.058 0.942 9 C 0.223 3.777 10 N -0.587 5.587 11 C 0.202 3.798 12 C -0.007 4.007 13 C -0.200 4.200 14 C -0.224 4.224 15 C -0.045 4.045 16 O -0.156 6.156 17 C 0.528 3.472 18 O -0.561 6.561 19 C -0.099 4.099 20 H 0.100 0.900 21 C -0.105 4.105 22 C -0.115 4.115 23 C 0.066 3.934 24 N -0.454 5.454 25 C 0.504 3.496 26 N -0.535 5.535 27 C 0.175 3.825 28 C -0.269 4.269 29 C 0.168 3.832 30 N -0.532 5.532 31 C 0.072 3.928 32 H 0.268 0.732 33 H 0.037 0.963 34 H 0.023 0.977 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.194 0.806 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.040 0.960 45 H 0.089 0.911 46 H 0.163 0.837 47 H 0.143 0.857 48 H 0.166 0.834 49 H 0.046 0.954 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 -3.263 7.792 9.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.174 4.174 3 Si 0.888 3.112 4 H -0.215 1.215 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.641 4.641 8 H 0.076 0.924 9 C 0.103 3.897 10 N -0.317 5.317 11 C 0.078 3.922 12 C -0.059 4.059 13 C -0.220 4.220 14 C -0.243 4.243 15 C -0.114 4.114 16 O -0.050 6.050 17 C 0.316 3.684 18 O -0.441 6.441 19 C -0.121 4.121 20 H 0.118 0.882 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.060 4.060 24 N -0.173 5.173 25 C 0.149 3.851 26 N -0.254 5.254 27 C 0.007 3.993 28 C -0.292 4.292 29 C 0.000 4.000 30 N -0.250 5.250 31 C -0.055 4.055 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.162 0.838 38 H 0.157 0.843 39 H 0.210 0.790 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.058 0.942 45 H 0.108 0.892 46 H 0.181 0.819 47 H 0.160 0.840 48 H 0.183 0.817 49 H 0.064 0.936 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.732 -2.805 7.032 8.441 hybrid contribution 1.353 -0.436 0.684 1.577 sum 5.084 -3.241 7.716 9.792 Atomic orbital electron populations 1.70805 1.06862 1.30546 1.45461 1.25579 0.96174 1.02189 0.93421 0.83674 0.75151 0.75584 0.76747 1.21542 1.21228 1.21060 1.22129 0.96296 0.91416 1.54298 0.92362 1.19697 0.88605 0.84088 0.97324 1.48170 1.40203 1.33448 1.09885 1.19625 0.84698 0.97307 0.90523 1.22844 0.97430 0.85504 1.00139 1.21568 0.92680 1.02425 1.05298 1.21721 1.00710 0.96208 1.05669 1.23896 0.82943 1.01019 1.03572 1.84124 1.26953 1.33753 1.60191 1.20305 0.83951 0.80762 0.83374 1.90582 1.36653 1.34542 1.82274 1.21296 1.00430 0.96119 0.94251 0.88184 1.21488 1.00604 0.96967 0.95239 1.21624 1.00401 0.95605 0.97656 1.22194 1.00485 0.89801 0.93535 1.58300 1.49771 0.99783 1.09443 1.20957 0.84832 0.92582 0.86767 1.68495 1.15838 1.10939 1.30107 1.23061 0.97320 0.89600 0.89280 1.22661 1.00136 1.03872 1.02555 1.22984 0.93089 0.88626 0.95323 1.67964 1.30734 1.14752 1.11590 1.22271 0.91967 0.99319 0.91937 0.92110 0.94530 0.95940 0.88328 0.89222 0.83802 0.84322 0.78968 0.91416 0.91087 0.90732 0.90598 0.94167 0.89245 0.81937 0.83956 0.81731 0.93563 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.57 13.65 55.43 0.76 -24.82 16 2 C 0.03 0.87 5.44 -17.82 -0.10 0.77 16 3 Si 1.06 24.98 29.92 -169.99 -5.09 19.89 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.60 -15.52 7.19 -34.44 -0.25 -15.77 16 8 H 0.06 1.61 7.26 -52.48 -0.38 1.23 16 9 C 0.22 5.11 4.32 -5.20 -0.02 5.09 16 10 N -0.59 -12.06 2.45 -176.43 -0.43 -12.49 16 11 C 0.20 3.73 5.89 -5.19 -0.03 3.70 16 12 C -0.01 -0.14 6.59 -35.62 -0.23 -0.38 16 13 C -0.20 -3.73 10.55 -39.70 -0.42 -4.15 16 14 C -0.22 -3.75 10.91 -39.70 -0.43 -4.19 16 15 C -0.05 -0.77 12.09 29.42 0.36 -0.42 16 16 O -0.16 -3.17 10.35 5.71 0.06 -3.11 16 17 C 0.53 10.70 6.79 -10.98 -0.07 10.63 16 18 O -0.56 -11.93 15.35 5.56 0.09 -11.85 16 19 C -0.10 -1.84 1.85 -91.69 -0.17 -2.01 16 20 H 0.10 1.90 6.50 -51.93 -0.34 1.56 16 21 C -0.10 -1.61 4.80 -26.60 -0.13 -1.74 16 22 C -0.12 -1.52 6.09 -26.65 -0.16 -1.68 16 23 C 0.07 0.99 5.35 -3.84 -0.02 0.97 16 24 N -0.45 -8.49 4.71 -175.43 -0.83 -9.32 16 25 C 0.50 9.65 7.08 -322.80 -2.29 7.37 16 26 N -0.53 -10.40 8.71 -13.93 -0.12 -10.52 16 27 C 0.18 2.74 11.30 -17.23 -0.19 2.55 16 28 C -0.27 -3.41 10.16 -39.31 -0.40 -3.81 16 29 C 0.17 2.26 11.30 -17.22 -0.19 2.06 16 30 N -0.53 -9.13 9.83 -13.93 -0.14 -9.27 16 31 C 0.07 1.45 3.74 -3.84 -0.01 1.43 16 32 H 0.27 7.52 7.08 -40.82 -0.29 7.23 16 33 H 0.04 0.87 5.02 -51.92 -0.26 0.61 16 34 H 0.02 0.53 7.95 -51.93 -0.41 0.12 16 35 H 0.10 1.65 7.66 -51.93 -0.40 1.25 16 36 H 0.09 1.54 7.90 -51.93 -0.41 1.13 16 37 H 0.14 2.66 7.96 -52.49 -0.42 2.24 16 38 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 39 H 0.19 2.51 8.06 -52.49 -0.42 2.08 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.15 7.82 -51.93 -0.41 0.75 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 1.28 7.65 -51.93 -0.40 0.88 16 46 H 0.16 2.10 8.06 -52.48 -0.42 1.67 16 47 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 48 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 49 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 50 H 0.14 3.32 4.82 -51.93 -0.25 3.07 16 LS Contribution 406.25 15.07 6.12 6.12 Total: -1.00 -32.73 406.25 -11.33 -44.06 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -6.98 Total: 10.85 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -4.77 Total: 0.45 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: -0.76 Total: -66.42 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.14 Total: -14.96 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.09 Total: 19.89 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.73 -11.33 -44.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065609814.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.128 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds