Wall clock time and date at job start Tue Mar 31 2020 05:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48499 * 109.46892 * 269.99545 * 3 2 1 5 5 H 1.48497 * 109.47094 * 29.99445 * 3 2 1 6 6 H 1.48497 * 109.47302 * 149.99745 * 3 2 1 7 7 C 1.38954 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00121 * 198.93186 * 7 2 1 9 9 N 1.37095 * 119.99977 * 18.93574 * 7 2 1 10 10 C 1.34779 * 120.00019 * 42.93596 * 9 7 2 11 11 O 1.21292 * 119.99745 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99770 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.53671 * 60.10042 * 12 10 9 14 14 C 1.53120 * 109.50249 * 180.19402 * 12 10 9 15 15 C 1.53114 * 109.16132 * 177.59684 * 14 12 10 16 16 C 1.53041 * 109.27794 * 302.34659 * 15 14 12 17 17 N 1.46845 * 109.52275 * 59.17954 * 16 15 14 18 18 C 1.37994 * 110.99936 * 174.15661 * 17 16 15 19 19 N 1.28893 * 124.82232 * 304.21398 * 18 17 16 20 20 C 1.34812 * 117.88242 * 179.97438 * 19 18 17 21 21 C 1.41093 * 128.74357 * 180.02562 * 20 19 18 22 22 C 1.37197 * 120.43964 * 179.97438 * 21 20 19 23 23 C 1.38712 * 120.60034 * 359.97438 * 22 21 20 24 24 C 1.37724 * 119.97263 * 359.78131 * 23 22 21 25 25 C 1.39259 * 120.20128 * 0.44383 * 24 23 22 26 26 S 1.75805 * 124.81240 * 124.15753 * 18 17 16 27 27 C 1.46847 * 111.19889 * 298.25759 * 17 16 15 28 28 C 1.46504 * 120.00036 * 222.93718 * 9 7 2 29 29 C 1.53000 * 117.49818 * 7.46287 * 28 9 7 30 30 C 1.52995 * 60.00288 * 252.51398 * 29 28 9 31 31 H 0.96996 * 120.00159 * 354.93895 * 1 2 3 32 32 H 1.09006 * 109.52070 * 297.50665 * 14 12 10 33 33 H 1.09004 * 109.52318 * 57.62617 * 14 12 10 34 34 H 1.09001 * 109.50615 * 62.28718 * 15 14 12 35 35 H 1.09001 * 109.50645 * 182.36660 * 15 14 12 36 36 H 1.08997 * 109.45881 * 299.16498 * 16 15 14 37 37 H 1.09003 * 109.45798 * 179.19461 * 16 15 14 38 38 H 1.08003 * 119.77967 * 0.02562 * 21 20 19 39 39 H 1.08003 * 119.70374 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.01744 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.89838 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.46047 * 181.75416 * 27 17 16 43 43 H 1.08996 * 109.46299 * 301.73834 * 27 17 16 44 44 H 1.09000 * 115.54986 * 153.17582 * 28 9 7 45 45 H 1.09003 * 117.49726 * 0.02562 * 29 28 9 46 46 H 1.08996 * 117.50065 * 145.02025 * 29 28 9 47 47 H 1.09004 * 117.49820 * 252.51161 * 30 29 28 48 48 H 1.09004 * 117.52167 * 107.47785 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0450 -1.2286 0.3040 9 7 1.3790 -2.3587 -0.3842 10 6 0.5728 -2.3592 -1.4643 11 8 0.4042 -1.3373 -2.0956 12 6 -0.1200 -3.6290 -1.8869 13 1 -0.7641 -3.9787 -1.0800 14 6 -0.9650 -3.3594 -3.1350 15 6 -1.6173 -4.6669 -3.5925 16 6 -0.5281 -5.7075 -3.8625 17 7 0.2517 -5.9306 -2.6384 18 6 1.1582 -6.9569 -2.8097 19 7 0.8546 -8.1523 -3.1841 20 6 1.8549 -9.0476 -3.3072 21 6 1.7849 -10.4019 -3.6968 22 6 2.9229 -11.1651 -3.7656 23 6 4.1593 -10.6188 -3.4544 24 6 4.2524 -9.2977 -3.0765 25 6 3.1071 -8.5096 -2.9966 26 16 2.8914 -6.8189 -2.5496 27 6 0.9258 -4.6996 -2.2064 28 6 1.5822 -3.5928 0.3787 29 6 2.3643 -3.4921 1.6898 30 6 3.0069 -4.1441 0.4639 31 1 -0.4850 0.8367 0.0741 32 1 -1.7391 -2.6288 -2.8999 33 1 -0.3276 -2.9716 -3.9297 34 1 -2.2849 -5.0330 -2.8124 35 1 -2.1865 -4.4899 -4.5050 36 1 0.1309 -5.3467 -4.6522 37 1 -0.9900 -6.6441 -4.1747 38 1 0.8291 -10.8404 -3.9433 39 1 2.8556 -12.2004 -4.0657 40 1 5.0490 -11.2284 -3.5113 41 1 5.2158 -8.8736 -2.8348 42 1 1.5198 -4.9043 -1.3156 43 1 1.5779 -4.3436 -3.0039 44 1 0.7655 -4.3133 0.3334 45 1 2.7274 -2.5076 1.9849 46 1 2.0623 -4.1464 2.5075 47 1 3.1275 -5.2274 0.4751 48 1 3.7929 -3.5889 -0.0481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065894792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:56 Heat of formation + Delta-G solvation = 75.464563 kcal Electronic energy + Delta-G solvation = -31953.385931 eV Core-core repulsion = 27908.279036 eV Total energy + Delta-G solvation = -4045.106895 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 371.141 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.53728 -39.76090 -38.27621 -36.60100 -36.03191 -33.34541 -32.67825 -31.53547 -31.18706 -30.41635 -29.23309 -25.65092 -25.05042 -23.78965 -23.59137 -22.50399 -21.76101 -21.35560 -20.85496 -20.12406 -18.91434 -18.57047 -17.24993 -16.50535 -16.17750 -16.12871 -15.44813 -15.32761 -14.91420 -14.72081 -14.70354 -14.30860 -14.20508 -14.00815 -13.81110 -13.79534 -13.16512 -13.01671 -12.70769 -12.56501 -12.35591 -12.11688 -11.88358 -11.75416 -11.45252 -11.10142 -10.96571 -10.95177 -10.86301 -10.68702 -10.64411 -10.46226 -10.37774 -10.20836 -10.18777 -9.95997 -9.86953 -9.70954 -9.39698 -8.75091 -8.26807 -8.06008 -8.05635 -7.07630 -6.14793 -3.89752 0.36002 0.97989 1.06797 1.60994 2.22086 3.06382 3.28595 3.35306 3.38521 3.56237 4.01765 4.21312 4.29532 4.54151 4.69627 4.71554 4.76273 4.89709 4.92895 5.01884 5.06982 5.15801 5.17223 5.31056 5.36518 5.41077 5.51686 5.53171 5.58223 5.67096 5.69456 5.80174 5.82251 5.91528 5.91884 6.00170 6.05436 6.10775 6.16646 6.19507 6.20495 6.39685 6.48087 6.56775 6.57661 6.68756 6.71810 6.77064 6.91280 7.58663 7.64261 8.22277 9.01010 9.10235 9.61371 10.22790 10.94117 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.014654 B = 0.002899 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.281582 B = 9655.358662 C =10909.299087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.350 4.350 8 H 0.079 0.921 9 N -0.424 5.424 10 C 0.487 3.513 11 O -0.525 6.525 12 C -0.094 4.094 13 H 0.091 0.909 14 C -0.100 4.100 15 C -0.118 4.118 16 C 0.063 3.937 17 N -0.437 5.437 18 C 0.318 3.682 19 N -0.505 5.505 20 C 0.112 3.888 21 C -0.079 4.079 22 C -0.105 4.105 23 C -0.119 4.119 24 C -0.064 4.064 25 C -0.188 4.188 26 S 0.041 5.959 27 C 0.044 3.956 28 C 0.069 3.931 29 C -0.172 4.172 30 C -0.210 4.210 31 H 0.264 0.736 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.060 0.940 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.820 -19.231 -6.010 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.477 4.477 8 H 0.097 0.903 9 N -0.145 5.145 10 C 0.273 3.727 11 O -0.402 6.402 12 C -0.117 4.117 13 H 0.109 0.891 14 C -0.138 4.138 15 C -0.156 4.156 16 C -0.064 4.064 17 N -0.156 5.156 18 C -0.058 4.058 19 N -0.224 5.224 20 C -0.009 4.009 21 C -0.100 4.100 22 C -0.126 4.126 23 C -0.140 4.140 24 C -0.087 4.087 25 C -0.307 4.307 26 S 0.292 5.708 27 C -0.082 4.082 28 C -0.037 4.037 29 C -0.210 4.210 30 C -0.249 4.249 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.126 0.874 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.102 0.898 47 H 0.103 0.897 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.230 -17.851 -5.820 19.052 hybrid contribution 0.721 0.079 -0.357 0.808 sum 3.951 -17.772 -6.178 19.226 Atomic orbital electron populations 1.69823 1.06546 1.27455 1.42522 1.25211 0.94805 0.99338 0.94320 0.86220 0.79312 0.82224 0.78322 1.20336 1.21305 1.19906 1.18867 0.94878 0.83871 1.50071 0.90345 1.42808 1.43467 1.06260 1.21920 1.19449 0.83301 0.88339 0.81635 1.90539 1.62055 1.33485 1.54122 1.21269 0.96623 0.94253 0.99509 0.89073 1.21389 0.99531 0.96226 0.96664 1.21708 0.97017 0.94675 1.02220 1.22372 0.95459 1.01120 0.87417 1.58158 1.20284 1.05529 1.31672 1.25707 0.91026 0.93170 0.95902 1.66329 1.33223 0.99980 1.22892 1.18971 0.86034 0.94823 1.01069 1.20626 0.99414 0.90094 0.99835 1.20906 0.91969 0.99907 0.99781 1.21040 0.98040 0.94386 1.00554 1.20329 0.96029 0.93323 0.99023 1.23625 0.98742 0.98194 1.10124 1.85558 1.06615 1.06455 1.72158 1.22799 0.96350 0.86576 1.02507 1.21789 0.92985 0.91517 0.97440 1.23089 1.04267 1.02645 0.90977 1.23377 0.98517 0.99164 1.03837 0.92554 0.90349 0.91376 0.90688 0.90476 0.93119 0.88930 0.85037 0.85053 0.85062 0.85453 0.87413 0.92154 0.87735 0.87362 0.89787 0.89671 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.01 11.66 55.50 0.65 -23.36 16 2 C 0.07 2.04 4.36 -17.47 -0.08 1.96 16 3 Si 0.91 21.55 29.60 -169.99 -5.03 16.52 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.35 -9.24 7.84 -14.93 -0.12 -9.35 16 8 H 0.08 2.01 7.39 -52.49 -0.39 1.62 16 9 N -0.42 -10.14 2.85 -107.72 -0.31 -10.45 16 10 C 0.49 11.70 6.38 -10.98 -0.07 11.63 16 11 O -0.53 -14.77 13.63 5.55 0.08 -14.70 16 12 C -0.09 -1.74 1.90 -91.69 -0.17 -1.91 16 13 H 0.09 1.67 7.57 -51.93 -0.39 1.28 16 14 C -0.10 -1.66 4.58 -26.61 -0.12 -1.79 16 15 C -0.12 -1.51 6.09 -26.65 -0.16 -1.68 16 16 C 0.06 0.83 5.37 -3.83 -0.02 0.81 16 17 N -0.44 -6.49 4.71 -174.30 -0.82 -7.31 16 18 C 0.32 4.76 6.91 -88.92 -0.61 4.15 16 19 N -0.50 -7.66 10.19 -11.17 -0.11 -7.77 16 20 C 0.11 1.54 6.94 -84.90 -0.59 0.95 16 21 C -0.08 -0.85 10.10 -38.88 -0.39 -1.24 16 22 C -0.10 -0.88 9.99 -39.78 -0.40 -1.28 16 23 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 24 C -0.06 -0.67 10.06 -39.39 -0.40 -1.06 16 25 C -0.19 -2.46 6.52 -38.62 -0.25 -2.71 16 26 S 0.04 0.56 21.38 -107.50 -2.30 -1.74 16 27 C 0.04 0.72 3.40 -3.83 -0.01 0.71 16 28 C 0.07 1.33 4.31 -67.93 -0.29 1.04 16 29 C -0.17 -3.04 9.80 -26.73 -0.26 -3.30 16 30 C -0.21 -3.49 9.40 -26.73 -0.25 -3.74 16 31 H 0.26 7.35 8.32 -40.82 -0.34 7.01 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.16 7.79 -51.93 -0.40 0.76 16 38 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.11 1.76 3.70 -51.93 -0.19 1.57 16 43 H 0.06 1.01 8.02 -51.93 -0.42 0.60 16 44 H 0.11 1.88 6.24 -51.93 -0.32 1.56 16 45 H 0.11 2.12 6.82 -51.93 -0.35 1.77 16 46 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 47 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 392.44 15.07 5.91 5.91 Total: -1.00 -32.30 392.44 -13.21 -45.52 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.68 Total: 5.59 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -4.60 Total: -8.22 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.59 Total: -48.89 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.08 Total: -14.70 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Atomic # 16 Polarization: 0.56 SS G_CDS: -2.30 Total: -1.74 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.30 -13.21 -45.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.980 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds