Wall clock time and date at job start Tue Mar 31 2020 05:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48499 * 109.46892 * 269.99545 * 3 2 1 5 5 H 1.48497 * 109.47094 * 29.99445 * 3 2 1 6 6 H 1.48497 * 109.47302 * 149.99745 * 3 2 1 7 7 C 1.38954 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00121 * 198.93186 * 7 2 1 9 9 N 1.37095 * 119.99977 * 18.93574 * 7 2 1 10 10 C 1.34779 * 120.00019 * 42.93596 * 9 7 2 11 11 O 1.21292 * 119.99745 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99770 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.53671 * 60.10042 * 12 10 9 14 14 C 1.53120 * 109.50249 * 180.19402 * 12 10 9 15 15 C 1.53114 * 109.16132 * 177.59684 * 14 12 10 16 16 C 1.53041 * 109.27794 * 302.34659 * 15 14 12 17 17 N 1.46845 * 109.52275 * 59.17954 * 16 15 14 18 18 C 1.37994 * 110.99936 * 174.15661 * 17 16 15 19 19 N 1.28893 * 124.82232 * 304.21398 * 18 17 16 20 20 C 1.34812 * 117.88242 * 179.97438 * 19 18 17 21 21 C 1.41093 * 128.74357 * 180.02562 * 20 19 18 22 22 C 1.37197 * 120.43964 * 179.97438 * 21 20 19 23 23 C 1.38712 * 120.60034 * 359.97438 * 22 21 20 24 24 C 1.37724 * 119.97263 * 359.78131 * 23 22 21 25 25 C 1.39259 * 120.20128 * 0.44383 * 24 23 22 26 26 S 1.75805 * 124.81240 * 124.15753 * 18 17 16 27 27 C 1.46847 * 111.19889 * 298.25759 * 17 16 15 28 28 C 1.46504 * 120.00036 * 222.93718 * 9 7 2 29 29 C 1.53000 * 117.49818 * 7.46287 * 28 9 7 30 30 C 1.52995 * 60.00288 * 252.51398 * 29 28 9 31 31 H 0.96996 * 120.00159 * 354.93895 * 1 2 3 32 32 H 1.09006 * 109.52070 * 297.50665 * 14 12 10 33 33 H 1.09004 * 109.52318 * 57.62617 * 14 12 10 34 34 H 1.09001 * 109.50615 * 62.28718 * 15 14 12 35 35 H 1.09001 * 109.50645 * 182.36660 * 15 14 12 36 36 H 1.08997 * 109.45881 * 299.16498 * 16 15 14 37 37 H 1.09003 * 109.45798 * 179.19461 * 16 15 14 38 38 H 1.08003 * 119.77967 * 0.02562 * 21 20 19 39 39 H 1.08003 * 119.70374 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.01744 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.89838 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.46047 * 181.75416 * 27 17 16 43 43 H 1.08996 * 109.46299 * 301.73834 * 27 17 16 44 44 H 1.09000 * 115.54986 * 153.17582 * 28 9 7 45 45 H 1.09003 * 117.49726 * 0.02562 * 29 28 9 46 46 H 1.08996 * 117.50065 * 145.02025 * 29 28 9 47 47 H 1.09004 * 117.49820 * 252.51161 * 30 29 28 48 48 H 1.09004 * 117.52167 * 107.47785 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0450 -1.2286 0.3040 9 7 1.3790 -2.3587 -0.3842 10 6 0.5728 -2.3592 -1.4643 11 8 0.4042 -1.3373 -2.0956 12 6 -0.1200 -3.6290 -1.8869 13 1 -0.7641 -3.9787 -1.0800 14 6 -0.9650 -3.3594 -3.1350 15 6 -1.6173 -4.6669 -3.5925 16 6 -0.5281 -5.7075 -3.8625 17 7 0.2517 -5.9306 -2.6384 18 6 1.1582 -6.9569 -2.8097 19 7 0.8546 -8.1523 -3.1841 20 6 1.8549 -9.0476 -3.3072 21 6 1.7849 -10.4019 -3.6968 22 6 2.9229 -11.1651 -3.7656 23 6 4.1593 -10.6188 -3.4544 24 6 4.2524 -9.2977 -3.0765 25 6 3.1071 -8.5096 -2.9966 26 16 2.8914 -6.8189 -2.5496 27 6 0.9258 -4.6996 -2.2064 28 6 1.5822 -3.5928 0.3787 29 6 2.3643 -3.4921 1.6898 30 6 3.0069 -4.1441 0.4639 31 1 -0.4850 0.8367 0.0741 32 1 -1.7391 -2.6288 -2.8999 33 1 -0.3276 -2.9716 -3.9297 34 1 -2.2849 -5.0330 -2.8124 35 1 -2.1865 -4.4899 -4.5050 36 1 0.1309 -5.3467 -4.6522 37 1 -0.9900 -6.6441 -4.1747 38 1 0.8291 -10.8404 -3.9433 39 1 2.8556 -12.2004 -4.0657 40 1 5.0490 -11.2284 -3.5113 41 1 5.2158 -8.8736 -2.8348 42 1 1.5198 -4.9043 -1.3156 43 1 1.5779 -4.3436 -3.0039 44 1 0.7655 -4.3133 0.3334 45 1 2.7274 -2.5076 1.9849 46 1 2.0623 -4.1464 2.5075 47 1 3.1275 -5.2274 0.4751 48 1 3.7929 -3.5889 -0.0481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065894792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:55 Heat of formation + Delta-G solvation = 57.317923 kcal Electronic energy + Delta-G solvation = -31954.172828 eV Core-core repulsion = 27908.279036 eV Total energy + Delta-G solvation = -4045.893793 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 371.141 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.67910 -40.97469 -39.69385 -37.96820 -37.33825 -34.92961 -34.24170 -33.14664 -32.03947 -31.94195 -30.14035 -27.34742 -26.33571 -25.12967 -24.62472 -23.47370 -23.15876 -22.82419 -22.16590 -21.32732 -20.51501 -19.52302 -18.61855 -17.90790 -17.66457 -17.36864 -16.73968 -16.42102 -16.28666 -16.11623 -15.85548 -15.81477 -15.40800 -15.34231 -14.98545 -14.79083 -14.63783 -14.37348 -14.33814 -13.64172 -13.56791 -13.37996 -13.08713 -12.92114 -12.83151 -12.75801 -12.69572 -12.43877 -12.26299 -12.09464 -12.00743 -11.85762 -11.80910 -11.67929 -11.40500 -11.26514 -11.10260 -10.94972 -10.73547 -10.42109 -9.95895 -9.21070 -9.01252 -8.98770 -8.20386 -5.97541 -0.56518 0.05626 0.21125 0.63812 1.30352 1.36010 1.44064 1.48710 1.91134 2.23151 2.40113 2.75439 3.01383 3.10023 3.31118 3.36126 3.61035 3.65841 3.76947 3.83067 3.96705 4.04598 4.09382 4.12782 4.18128 4.24476 4.35181 4.37351 4.39147 4.42800 4.49942 4.54910 4.61286 4.73556 4.79609 4.85185 4.94585 4.98246 5.05230 5.14470 5.19709 5.24142 5.28578 5.34985 5.37848 5.45104 5.47164 5.49923 5.64067 5.85042 6.19627 6.62547 7.02261 7.17729 7.68040 8.33104 8.88292 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.014654 B = 0.002899 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.281582 B = 9655.358662 C =10909.299087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.023 3.977 3 Si 0.968 3.032 4 H -0.291 1.291 5 H -0.282 1.282 6 H -0.254 1.254 7 C -0.356 4.356 8 H 0.080 0.920 9 N -0.438 5.438 10 C 0.474 3.526 11 O -0.578 6.578 12 C -0.083 4.083 13 H 0.093 0.907 14 C -0.095 4.095 15 C -0.104 4.104 16 C 0.064 3.936 17 N -0.439 5.439 18 C 0.299 3.701 19 N -0.513 5.513 20 C 0.075 3.925 21 C -0.088 4.088 22 C -0.094 4.094 23 C -0.101 4.101 24 C -0.079 4.079 25 C -0.198 4.198 26 S 0.024 5.976 27 C 0.063 3.937 28 C 0.044 3.956 29 C -0.168 4.168 30 C -0.181 4.181 31 H 0.259 0.741 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.050 0.950 37 H 0.103 0.897 38 H 0.142 0.858 39 H 0.170 0.830 40 H 0.170 0.830 41 H 0.143 0.857 42 H 0.108 0.892 43 H 0.048 0.952 44 H 0.119 0.881 45 H 0.086 0.914 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.394 -23.169 -6.218 24.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.183 4.183 3 Si 0.793 3.207 4 H -0.218 1.218 5 H -0.208 1.208 6 H -0.178 1.178 7 C -0.483 4.483 8 H 0.098 0.902 9 N -0.158 5.158 10 C 0.262 3.738 11 O -0.459 6.459 12 C -0.105 4.105 13 H 0.111 0.889 14 C -0.134 4.134 15 C -0.142 4.142 16 C -0.062 4.062 17 N -0.159 5.159 18 C -0.077 4.077 19 N -0.232 5.232 20 C -0.045 4.045 21 C -0.109 4.109 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.102 4.102 25 C -0.317 4.317 26 S 0.275 5.725 27 C -0.065 4.065 28 C -0.062 4.062 29 C -0.205 4.205 30 C -0.220 4.220 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.068 0.932 37 H 0.121 0.879 38 H 0.160 0.840 39 H 0.187 0.813 40 H 0.187 0.813 41 H 0.161 0.839 42 H 0.126 0.874 43 H 0.066 0.934 44 H 0.136 0.864 45 H 0.104 0.896 46 H 0.133 0.867 47 H 0.134 0.866 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.835 -21.847 -5.998 23.166 hybrid contribution 0.377 1.047 -0.343 1.165 sum 5.212 -20.800 -6.341 22.361 Atomic orbital electron populations 1.69934 1.07951 1.27604 1.44849 1.26003 0.95478 1.02451 0.94395 0.85347 0.79087 0.78764 0.77490 1.21835 1.20770 1.17802 1.19113 0.95125 0.85120 1.48956 0.90201 1.43008 1.43164 1.07158 1.22446 1.20343 0.82883 0.89497 0.81082 1.90491 1.63860 1.35800 1.55704 1.21103 0.96876 0.92318 1.00230 0.88853 1.21332 0.98613 0.97954 0.95466 1.21638 0.96831 0.92158 1.03545 1.22428 0.95302 1.01528 0.86991 1.58150 1.20419 1.04676 1.32663 1.25619 0.91375 0.93179 0.97478 1.66284 1.34359 1.00187 1.22411 1.19362 0.86020 0.95932 1.03153 1.20962 1.01066 0.89150 0.99710 1.21397 0.91019 1.01319 0.97721 1.21563 0.99494 0.93629 0.97580 1.20703 0.95866 0.94192 0.99439 1.23808 0.99603 0.97474 1.10810 1.85439 1.06159 1.08169 1.72710 1.22461 0.95232 0.86619 1.02141 1.21984 0.95124 0.90322 0.98722 1.23147 1.03457 1.02381 0.91552 1.23330 0.95895 1.00614 1.02122 0.93146 0.92349 0.92771 0.90054 0.87787 0.93199 0.87861 0.83995 0.81274 0.81293 0.83921 0.87414 0.93370 0.86375 0.89583 0.86707 0.86606 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.44 11.66 21.66 0.25 -52.18 16 2 C 0.02 1.32 4.36 84.93 0.37 1.69 16 3 Si 0.97 45.57 29.60 68.60 2.03 47.60 16 4 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.25 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.36 -19.32 7.84 84.04 0.66 -18.66 16 8 H 0.08 4.19 7.39 -2.91 -0.02 4.17 16 9 N -0.44 -21.58 2.85 -613.11 -1.75 -23.33 16 10 C 0.47 23.83 6.38 87.66 0.56 24.39 16 11 O -0.58 -34.38 13.63 -3.07 -0.04 -34.42 16 12 C -0.08 -3.17 1.90 -11.49 -0.02 -3.20 16 13 H 0.09 3.51 7.57 -2.39 -0.02 3.49 16 14 C -0.10 -3.30 4.58 30.67 0.14 -3.16 16 15 C -0.10 -2.59 6.09 30.65 0.19 -2.41 16 16 C 0.06 1.64 5.37 86.33 0.46 2.10 16 17 N -0.44 -12.93 4.71 -705.37 -3.32 -16.25 16 18 C 0.30 8.86 6.91 179.75 1.24 10.10 16 19 N -0.51 -15.17 10.19 -189.24 -1.93 -17.10 16 20 C 0.07 1.95 6.94 39.76 0.28 2.23 16 21 C -0.09 -1.66 10.10 22.73 0.23 -1.43 16 22 C -0.09 -1.17 9.99 22.14 0.22 -0.94 16 23 C -0.10 -1.24 10.05 22.26 0.22 -1.01 16 24 C -0.08 -1.42 10.06 22.39 0.23 -1.19 16 25 C -0.20 -4.89 6.52 22.89 0.15 -4.74 16 26 S 0.02 0.66 21.38 -56.49 -1.21 -0.55 16 27 C 0.06 2.07 3.40 86.32 0.29 2.36 16 28 C 0.04 1.68 4.31 44.99 0.19 1.87 16 29 C -0.17 -5.75 9.80 30.59 0.30 -5.45 16 30 C -0.18 -5.78 9.40 30.59 0.29 -5.50 16 31 H 0.26 15.14 8.32 -92.71 -0.77 14.37 16 32 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.05 1.99 8.04 -2.39 -0.02 1.97 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 37 H 0.10 2.47 7.79 -2.39 -0.02 2.45 16 38 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 40 H 0.17 0.82 8.06 -2.91 -0.02 0.79 16 41 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 42 H 0.11 3.52 3.70 -2.39 -0.01 3.51 16 43 H 0.05 1.68 8.02 -2.39 -0.02 1.66 16 44 H 0.12 4.20 6.24 -2.39 -0.01 4.19 16 45 H 0.09 3.37 6.82 -2.39 -0.02 3.35 16 46 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 47 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 48 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 Total: -1.00 -74.79 392.44 1.02 -73.77 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.98 Total: 25.42 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 6.00 Total: -2.95 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -6.74 Total: -108.87 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.04 Total: -34.42 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -1.21 Total: -0.55 kcal Total: -74.79 1.02 -73.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.089 kcal (2) G-P(sol) polarization free energy of solvation -74.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds