Wall clock time and date at job start Tue Mar 31 2020 05:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30854 * 125.89494 * 2 1 4 4 N 1.40085 * 108.21921 * 180.10945 * 3 2 1 5 5 C 1.46499 * 126.03522 * 179.85420 * 4 3 2 6 6 N 1.46901 * 109.47054 * 263.63734 * 5 4 3 7 7 C 1.46897 * 111.00149 * 193.21706 * 6 5 4 8 8 C 1.50705 * 109.47141 * 75.51089 * 7 6 5 9 9 H 1.08003 * 119.99600 * 5.21197 * 8 7 6 10 10 C 1.37873 * 119.99759 * 185.21756 * 8 7 6 11 11 N 1.31513 * 120.00159 * 5.38571 * 10 8 7 12 12 Si 1.86799 * 119.99810 * 185.38387 * 10 8 7 13 13 H 1.48496 * 109.47047 * 64.99532 * 12 10 8 14 14 H 1.48498 * 109.47203 * 184.99945 * 12 10 8 15 15 H 1.48501 * 109.47256 * 304.99719 * 12 10 8 16 16 C 1.46900 * 110.99688 * 69.25942 * 6 5 4 17 17 C 1.53004 * 109.46997 * 190.00129 * 16 6 5 18 18 H 1.09001 * 110.43618 * 303.91155 * 17 16 6 19 19 C 1.54808 * 110.48856 * 181.22609 * 17 16 6 20 20 C 1.54997 * 102.09189 * 220.44000 * 19 17 16 21 21 O 1.44377 * 103.48810 * 37.02379 * 20 19 17 22 22 C 1.43742 * 106.97893 * 319.93997 * 21 20 19 23 23 C 1.35015 * 107.92653 * 359.58147 * 4 3 2 24 24 C 1.50704 * 126.13356 * 180.21978 * 23 4 3 25 25 C 1.35365 * 107.73406 * 0.25141 * 23 4 3 26 26 Br 1.89097 * 126.04365 * 180.02562 * 25 23 4 27 27 H 1.08999 * 109.47326 * 270.35436 * 1 2 3 28 28 H 1.08998 * 109.47063 * 30.34950 * 1 2 3 29 29 H 1.08997 * 109.47182 * 150.34980 * 1 2 3 30 30 H 1.09005 * 109.46943 * 143.63960 * 5 4 3 31 31 H 1.08994 * 109.47403 * 23.63874 * 5 4 3 32 32 H 1.08995 * 109.47241 * 195.50541 * 7 6 5 33 33 H 1.09001 * 109.47181 * 315.51058 * 7 6 5 34 34 H 0.97006 * 119.99940 * 180.02562 * 11 10 8 35 35 H 1.08993 * 109.47330 * 310.00241 * 16 6 5 36 36 H 1.09005 * 109.46889 * 70.00393 * 16 6 5 37 37 H 1.09000 * 110.90738 * 338.64007 * 19 17 16 38 38 H 1.09000 * 110.91065 * 102.24223 * 19 17 16 39 39 H 1.09001 * 110.61978 * 278.52164 * 20 19 17 40 40 H 1.08998 * 110.75214 * 155.58644 * 20 19 17 41 41 H 1.09001 * 109.87814 * 267.09316 * 22 21 20 42 42 H 1.08995 * 109.88431 * 145.94029 * 22 21 20 43 43 H 1.08999 * 109.46676 * 94.25519 * 24 23 4 44 44 H 1.09001 * 109.47558 * 214.25673 * 24 23 4 45 45 H 1.08998 * 109.46970 * 334.26042 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6088 0.6347 -0.0025 5 6 4.7897 1.5018 -0.0064 6 7 5.2720 1.6661 -1.3842 7 6 6.6158 2.2591 -1.4044 8 6 7.6308 1.2168 -1.0115 9 1 7.3212 0.1944 -0.8528 10 6 8.9547 1.5685 -0.8545 11 7 9.3148 2.8303 -0.9433 12 14 10.2367 0.2529 -0.5156 13 1 10.3401 -0.6514 -1.6890 14 1 11.5524 0.8957 -0.2686 15 1 9.8369 -0.5316 0.6802 16 6 4.3312 2.4665 -2.1793 17 6 4.7325 2.4086 -3.6547 18 1 5.7631 2.7401 -3.7821 19 6 3.7734 3.2704 -4.5113 20 6 3.5769 2.3853 -5.7685 21 8 3.5504 1.0439 -5.2351 22 6 4.5529 0.9812 -4.2069 23 6 3.6148 -0.7154 0.0053 24 6 4.8358 -1.5987 0.0105 25 6 2.3273 -1.1334 0.0070 26 35 1.7411 -2.9312 0.0177 27 1 -0.3634 0.0064 1.0276 28 1 -0.3633 0.8868 -0.5192 29 1 -0.3633 -0.8931 -0.5084 30 1 5.5738 1.0505 0.6017 31 1 4.5264 2.4761 0.4050 32 1 6.8377 2.6221 -2.4079 33 1 6.6569 3.0900 -0.7001 34 1 10.2463 3.0777 -0.8332 35 1 3.3240 2.0672 -2.0608 36 1 4.3546 3.5011 -1.8367 37 1 2.8265 3.4285 -3.9950 38 1 4.2352 4.2221 -4.7740 39 1 4.4118 2.5077 -6.4584 40 1 2.6344 2.6204 -6.2629 41 1 5.4935 0.6254 -4.6274 42 1 4.2251 0.3139 -3.4098 43 1 5.0854 -1.8674 1.0370 44 1 4.6325 -2.5032 -0.5627 45 1 5.6728 -1.0642 -0.4388 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068619267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:16 Heat of formation + Delta-G solvation = 30.818381 kcal Electronic energy + Delta-G solvation = -26889.600862 eV Core-core repulsion = 23182.944557 eV Total energy + Delta-G solvation = -3706.656306 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 371.095 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15329 -39.25485 -36.90218 -33.60182 -32.94921 -32.39258 -31.75357 -29.85210 -29.34184 -28.64032 -27.03970 -26.46835 -24.99948 -23.60007 -22.43749 -21.29767 -20.08391 -19.48696 -19.16091 -16.89999 -16.41688 -16.11280 -15.90303 -15.43664 -14.80824 -14.61118 -14.40236 -13.88174 -13.85967 -13.48720 -13.42288 -13.13522 -12.89429 -12.52143 -12.46555 -12.28098 -12.16767 -11.98564 -11.71959 -11.67983 -11.56606 -11.26359 -10.97990 -10.89018 -10.81597 -10.69212 -10.62779 -10.56843 -10.23969 -9.97511 -9.88871 -9.48241 -9.33867 -8.92198 -8.61384 -8.14970 -7.65506 -6.21592 -4.24970 1.88003 2.01708 2.69895 2.88985 3.21730 3.27800 3.29591 4.22876 4.24417 4.49348 4.72560 4.76546 4.89837 5.09265 5.12822 5.16082 5.23368 5.40626 5.44839 5.48181 5.53220 5.62963 5.75235 5.77061 5.77637 5.80901 5.85917 5.90664 5.93086 6.04607 6.10237 6.15435 6.16938 6.34312 6.37965 6.54733 6.64268 6.85158 6.97513 7.16587 7.21352 7.59144 7.71952 7.90139 7.90325 8.23033 8.82050 9.40875 10.88019 Molecular weight = 371.09amu Principal moments of inertia in cm(-1) A = 0.007982 B = 0.004111 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3507.023121 B = 6809.227601 C = 8884.085926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.099 3.901 3 N -0.293 5.293 4 N -0.345 5.345 5 C 0.304 3.696 6 N -0.547 5.547 7 C 0.195 3.805 8 C -0.517 4.517 9 H 0.064 0.936 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.896 3.104 13 H -0.275 1.275 14 H -0.288 1.288 15 H -0.275 1.275 16 C 0.065 3.935 17 C -0.115 4.115 18 H 0.092 0.908 19 C -0.150 4.150 20 C 0.048 3.952 21 O -0.386 6.386 22 C 0.065 3.935 23 C 0.156 3.844 24 C -0.107 4.107 25 C -0.257 4.257 26 Br -0.037 7.037 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.003 0.997 34 H 0.264 0.736 35 H 0.071 0.929 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.550 -5.840 -0.284 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.069 4.069 3 N -0.116 5.116 4 N -0.126 5.126 5 C 0.094 3.906 6 N -0.274 5.274 7 C 0.071 3.929 8 C -0.556 4.556 9 H 0.083 0.917 10 C -0.141 4.141 11 N -0.532 5.532 12 Si 0.723 3.277 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.200 1.200 16 C -0.064 4.064 17 C -0.134 4.134 18 H 0.110 0.890 19 C -0.189 4.189 20 C -0.029 4.029 21 O -0.306 6.306 22 C -0.011 4.011 23 C 0.023 3.977 24 C -0.165 4.165 25 C -0.348 4.348 26 Br 0.046 6.954 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.021 0.979 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.497 -5.578 -0.540 15.542 hybrid contribution 1.171 0.014 0.577 1.305 sum -13.326 -5.564 0.037 14.441 Atomic orbital electron populations 1.20192 0.86662 1.03397 1.02927 1.22062 0.96795 0.89173 0.98913 1.77354 0.86745 1.21924 1.25532 1.48877 1.05307 1.03971 1.54469 1.22186 0.82548 0.92760 0.93098 1.62018 1.04789 1.51423 1.09125 1.19805 0.81180 0.94278 0.97668 1.21063 0.91784 0.95344 1.47380 0.91749 1.24961 0.98646 0.95358 0.95141 1.69935 1.17749 1.15895 1.49620 0.86591 0.80522 0.81641 0.78912 1.20097 1.21342 1.20047 1.22089 0.96539 0.95448 0.92280 1.22568 1.00580 0.95296 0.94929 0.89012 1.23164 1.00240 0.99005 0.96445 1.23462 1.01322 0.82530 0.95559 1.88834 1.58478 1.29811 1.53444 1.23099 0.91213 0.97009 0.89817 1.20889 0.95753 0.85285 0.95774 1.20691 0.93949 0.98333 1.03567 1.21256 0.93711 0.91274 1.28574 1.96476 1.89621 1.10751 1.98539 0.90527 0.90803 0.90302 0.86369 0.91932 0.94391 0.97910 0.92625 0.91024 0.95333 0.90776 0.90481 0.92546 0.89620 0.92495 0.89270 0.90018 0.89666 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.27 36.00 0.37 -0.46 16 2 C 0.10 1.50 7.22 -82.39 -0.59 0.91 16 3 N -0.29 -5.01 11.79 33.68 0.40 -4.61 16 4 N -0.34 -5.88 3.32 -60.10 -0.20 -6.08 16 5 C 0.30 5.41 5.45 -63.31 -0.35 5.07 16 6 N -0.55 -10.35 4.24 -239.98 -1.02 -11.37 16 7 C 0.20 4.40 4.63 -4.98 -0.02 4.38 16 8 C -0.52 -12.68 8.52 -34.44 -0.29 -12.97 16 9 H 0.06 1.54 6.74 -52.48 -0.35 1.18 16 10 C 0.06 1.58 5.45 -17.82 -0.10 1.48 16 11 N -0.89 -24.34 13.28 55.43 0.74 -23.61 16 12 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 15 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 16 C 0.06 1.13 3.98 -3.82 -0.02 1.11 16 17 C -0.11 -1.88 2.98 -89.09 -0.27 -2.14 16 18 H 0.09 1.64 6.19 -51.93 -0.32 1.32 16 19 C -0.15 -2.03 6.71 -24.72 -0.17 -2.20 16 20 C 0.05 0.64 7.72 38.21 0.29 0.93 16 21 O -0.39 -6.51 11.52 -35.23 -0.41 -6.92 16 22 C 0.07 1.11 7.21 37.73 0.27 1.39 16 23 C 0.16 2.50 6.94 -82.21 -0.57 1.93 16 24 C -0.11 -1.53 9.78 36.01 0.35 -1.18 16 25 C -0.26 -3.92 6.52 -39.98 -0.26 -4.18 16 26 Br -0.04 -0.47 33.13 -68.01 -2.25 -2.72 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 30 H 0.12 2.15 7.11 -51.93 -0.37 1.78 16 31 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 32 H 0.04 0.91 5.86 -51.93 -0.30 0.61 16 33 H 0.00 0.07 7.98 -51.93 -0.41 -0.34 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.07 1.30 6.85 -51.93 -0.36 0.95 16 36 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 37 H 0.07 0.99 7.87 -51.93 -0.41 0.58 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.09 1.67 7.57 -51.93 -0.39 1.27 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.12 7.91 -51.93 -0.41 0.71 16 45 H 0.10 1.58 6.60 -51.93 -0.34 1.24 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -27.33 381.55 -10.37 -37.70 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.02 Total: 2.89 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -1.34 Total: -5.95 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.08 Total: -45.67 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.41 Total: -6.92 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.25 Total: -2.72 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.33 -10.37 -37.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068619267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.519 kcal (2) G-P(sol) polarization free energy of solvation -27.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds