Wall clock time and date at job start Tue Mar 31 2020 05:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35735 * 117.00440 * 2 1 4 4 C 1.39177 * 119.83867 * 359.97438 * 3 2 1 5 5 C 1.36543 * 120.39099 * 180.02562 * 4 3 2 6 6 C 1.40047 * 120.06140 * 359.97404 * 5 4 3 7 7 C 1.46726 * 120.15832 * 179.97438 * 6 5 4 8 8 C 1.35175 * 120.00341 * 0.02562 * 7 6 5 9 9 C 1.41802 * 120.00210 * 179.72320 * 8 7 6 10 10 O 1.21741 * 120.00035 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00013 * 179.97438 * 9 8 7 12 12 C 1.46504 * 120.00240 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.46729 * 90.00046 * 12 11 9 14 14 H 1.08005 * 120.00525 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99882 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00058 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00110 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46938 * 89.99916 * 17 15 13 19 19 H 1.48491 * 109.47297 * 210.00069 * 17 15 13 20 20 H 1.48496 * 109.46966 * 330.00205 * 17 15 13 21 21 C 1.46499 * 119.99966 * 359.97438 * 11 9 8 22 22 C 1.50704 * 109.47403 * 90.00037 * 21 11 9 23 23 C 1.34516 * 125.79132 * 89.99438 * 22 21 11 24 24 C 1.41377 * 106.84056 * 180.02562 * 23 22 21 25 25 C 1.34518 * 106.84266 * 0.02562 * 24 23 22 26 26 O 1.34305 * 108.41945 * 359.73532 * 25 24 23 27 27 C 1.40555 * 119.67917 * 0.25712 * 6 5 4 28 28 O 1.35694 * 120.18705 * 179.72166 * 27 6 5 29 29 C 1.42898 * 116.99523 * 180.02562 * 28 27 6 30 30 C 1.38400 * 119.61806 * 359.51749 * 27 6 5 31 31 H 1.08999 * 109.47200 * 300.00605 * 1 2 3 32 32 H 1.09007 * 109.46913 * 59.99948 * 1 2 3 33 33 H 1.08992 * 109.47343 * 180.02562 * 1 2 3 34 34 H 1.08000 * 119.80843 * 359.97438 * 4 3 2 35 35 H 1.07999 * 119.96783 * 180.02562 * 5 4 3 36 36 H 1.08000 * 120.00352 * 179.72706 * 7 6 5 37 37 H 1.08000 * 119.99246 * 359.71795 * 8 7 6 38 38 H 1.08997 * 109.47355 * 210.00197 * 12 11 9 39 39 H 1.08993 * 109.47039 * 330.00431 * 12 11 9 40 40 H 0.97005 * 119.99991 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.47416 * 209.99872 * 21 11 9 42 42 H 1.09003 * 109.47441 * 330.00229 * 21 11 9 43 43 H 1.08004 * 126.57627 * 359.97438 * 23 22 21 44 44 H 1.08002 * 126.57959 * 179.97438 * 24 23 22 45 45 H 1.07998 * 125.79008 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.47379 * 300.00111 * 29 28 27 47 47 H 1.09002 * 109.47221 * 60.00296 * 29 28 27 48 48 H 1.09003 * 109.46514 * 180.02562 * 29 28 27 49 49 H 1.08002 * 120.03340 * 180.24753 * 30 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.2841 2.3745 -0.0005 5 6 1.8923 3.5970 -0.0011 6 6 3.2900 3.6852 -0.0005 7 6 3.9458 4.9977 -0.0017 8 6 3.2008 6.1256 -0.0027 9 6 3.8346 7.3941 0.0021 10 8 5.0498 7.4673 0.0077 11 7 3.0917 8.5186 0.0005 12 6 3.7465 9.8291 0.0061 13 6 3.9779 10.2810 -1.4128 14 1 3.6678 9.6548 -2.2364 15 6 4.5854 11.4938 -1.6596 16 7 4.7869 11.8885 -2.8980 17 14 5.1211 12.5772 -0.2353 18 1 6.5153 12.2381 0.1474 19 1 5.0531 14.0029 -0.6449 20 1 4.2208 12.3518 0.9239 21 6 1.6294 8.4304 -0.0067 22 6 1.1210 8.3976 1.4116 23 6 0.7901 9.4697 2.1537 24 6 0.3671 8.9823 3.4116 25 6 0.4654 7.6416 3.3632 26 8 0.9174 7.2928 2.1476 27 6 4.0615 2.5102 -0.0049 28 8 5.4164 2.5837 -0.0101 29 6 6.1330 1.3474 -0.0149 30 6 3.4312 1.2781 0.0004 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 0.2060 2.3114 -0.0014 35 1 1.2950 4.4967 -0.0011 36 1 5.0239 5.0628 0.0032 37 1 2.1228 6.0605 -0.0073 38 1 3.1103 10.5510 0.5182 39 1 4.7025 9.7554 0.5244 40 1 5.2147 12.7416 -3.0716 41 1 1.2156 9.2978 -0.5210 42 1 1.3227 7.5211 -0.5237 43 1 0.8389 10.5042 1.8475 44 1 0.0305 9.5731 4.2507 45 1 0.2180 6.9609 4.1643 46 1 5.8742 0.7739 0.8751 47 1 5.8672 0.7768 -0.9048 48 1 7.2043 1.5485 -0.0184 49 1 4.0174 0.3710 0.0011 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069347992.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:04 Heat of formation + Delta-G solvation = -29.862607 kcal Electronic energy + Delta-G solvation = -33264.231872 eV Core-core repulsion = 28739.512026 eV Total energy + Delta-G solvation = -4524.719846 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 371.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.36080 -40.80544 -39.34485 -39.16853 -37.02162 -35.31138 -33.55451 -32.80366 -32.54053 -30.78669 -30.31932 -29.80216 -28.16559 -27.58252 -27.11854 -25.51253 -24.22961 -22.65700 -22.01161 -21.50553 -20.63655 -20.19458 -19.05509 -18.25438 -17.49548 -17.12744 -16.82282 -16.68822 -16.35338 -16.25648 -15.91477 -15.79872 -15.41064 -15.17518 -14.96568 -14.72307 -14.13615 -14.09267 -13.73118 -13.41947 -13.09371 -12.99137 -12.75818 -12.68564 -12.65825 -12.54470 -12.44027 -12.22094 -12.07666 -11.92012 -11.67624 -11.48672 -11.32421 -11.13390 -11.03034 -10.88334 -10.50430 -10.16833 -9.75921 -9.74187 -9.52387 -9.07002 -8.86573 -8.55578 -8.35305 -7.89190 -7.63420 -6.05440 -4.04001 0.60179 1.16385 1.86037 2.10336 2.77596 2.78407 3.07684 3.15703 3.32350 3.38393 3.41039 3.55925 3.96866 4.15236 4.42986 4.43447 4.64090 4.71447 4.74569 4.77974 4.81904 4.90607 4.92348 5.04988 5.10255 5.10960 5.20458 5.20484 5.26465 5.28831 5.31057 5.36920 5.48750 5.64331 5.87079 5.91640 5.95763 5.97603 6.11459 6.12914 6.24979 6.26555 6.46215 6.66364 6.73801 6.80661 6.92931 7.01873 7.16086 7.26685 7.39272 7.64135 8.23264 8.50119 8.96638 9.02551 9.54994 11.07789 Molecular weight = 371.16amu Principal moments of inertia in cm(-1) A = 0.009373 B = 0.002650 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.557235 B =10565.238127 C =12498.189723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.172 3.828 4 C -0.243 4.243 5 C -0.022 4.022 6 C -0.133 4.133 7 C -0.010 4.010 8 C -0.217 4.217 9 C 0.546 3.454 10 O -0.539 6.539 11 N -0.587 5.587 12 C 0.216 3.784 13 C -0.527 4.527 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.874 3.126 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.265 1.265 21 C 0.191 3.809 22 C -0.024 4.024 23 C -0.198 4.198 24 C -0.214 4.214 25 C -0.049 4.049 26 O -0.173 6.173 27 C 0.188 3.812 28 O -0.301 6.301 29 C 0.024 3.976 30 C -0.248 4.248 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.123 0.877 38 H 0.030 0.970 39 H 0.038 0.962 40 H 0.264 0.736 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.197 0.803 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.104 0.896 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.633 -22.985 9.834 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.126 3.874 4 C -0.262 4.262 5 C -0.040 4.040 6 C -0.134 4.134 7 C -0.030 4.030 8 C -0.237 4.237 9 C 0.338 3.662 10 O -0.419 6.419 11 N -0.318 5.318 12 C 0.096 3.904 13 C -0.566 4.566 14 H 0.094 0.906 15 C -0.129 4.129 16 N -0.536 5.536 17 Si 0.701 3.299 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.190 1.190 21 C 0.066 3.934 22 C -0.076 4.076 23 C -0.218 4.218 24 C -0.234 4.234 25 C -0.117 4.117 26 O -0.069 6.069 27 C 0.141 3.859 28 O -0.213 6.213 29 C -0.071 4.071 30 C -0.268 4.268 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.141 0.859 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.136 0.864 42 H 0.106 0.894 43 H 0.166 0.834 44 H 0.162 0.838 45 H 0.214 0.786 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.122 0.878 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.629 -23.083 9.602 27.166 hybrid contribution -0.150 0.764 0.894 1.185 sum -10.779 -22.319 10.496 26.916 Atomic orbital electron populations 1.23111 0.77924 1.04041 1.01804 1.86010 1.21795 1.27054 1.88038 1.18835 0.91467 0.84181 0.92901 1.20828 1.00311 0.91980 1.13102 1.20838 0.92732 0.97727 0.92721 1.18328 0.92249 0.91303 1.11495 1.22114 1.00583 0.89414 0.90842 1.22151 1.00436 0.93216 1.07945 1.16983 0.87194 0.84557 0.77484 1.90794 1.13648 1.87554 1.49865 1.47880 1.04240 1.07956 1.71685 1.19676 0.93553 0.78782 0.98386 1.21328 1.39896 1.04142 0.91214 0.90558 1.24835 0.95053 0.97504 0.95500 1.69898 1.43212 1.21700 1.18745 0.86886 0.80076 0.79894 0.83090 1.19913 1.21106 1.18999 1.19932 0.82037 1.04948 0.86466 1.23348 1.03776 0.84025 0.96429 1.21685 1.05897 0.99967 0.94272 1.21809 1.07569 0.94698 0.99281 1.23929 1.04272 0.96414 0.87072 1.84015 1.65179 1.34996 1.22728 1.18826 0.82630 0.92328 0.92075 1.86130 1.14887 1.32836 1.87411 1.23158 0.97125 0.85246 1.01534 1.20276 0.92610 0.97420 1.16447 0.92323 0.92264 0.88165 0.85015 0.84313 0.84357 0.85900 0.95206 0.94434 0.92590 0.86425 0.89378 0.83374 0.83831 0.78606 0.92400 0.92320 0.87793 0.84360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.80 101.05 0.99 1.13 16 2 O -0.32 -2.94 10.48 -18.91 -0.20 -3.14 16 3 C 0.17 1.81 6.69 -39.04 -0.26 1.55 16 4 C -0.24 -2.40 8.96 -39.84 -0.36 -2.76 16 5 C -0.02 -0.25 9.35 -39.52 -0.37 -0.62 16 6 C -0.13 -1.80 5.88 -104.92 -0.62 -2.42 16 7 C -0.01 -0.15 9.16 -37.24 -0.34 -0.50 16 8 C -0.22 -3.71 8.45 -39.31 -0.33 -4.04 16 9 C 0.55 11.95 7.45 -14.90 -0.11 11.84 16 10 O -0.54 -14.02 15.69 5.15 0.08 -13.94 16 11 N -0.59 -12.50 2.44 -179.80 -0.44 -12.94 16 12 C 0.22 5.38 4.23 -5.19 -0.02 5.36 16 13 C -0.53 -15.16 9.94 -34.44 -0.34 -15.50 16 14 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 15 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 17 Si 0.87 21.80 27.47 -169.99 -4.67 17.13 16 18 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 21 C 0.19 3.12 5.62 -5.19 -0.03 3.09 16 22 C -0.02 -0.37 6.90 -35.62 -0.25 -0.62 16 23 C -0.20 -2.98 10.81 -39.70 -0.43 -3.40 16 24 C -0.21 -2.75 10.91 -39.70 -0.43 -3.18 16 25 C -0.05 -0.59 12.09 29.42 0.36 -0.23 16 26 O -0.17 -2.49 10.65 5.70 0.06 -2.43 16 27 C 0.19 2.37 6.70 -38.65 -0.26 2.11 16 28 O -0.30 -3.73 9.68 -18.79 -0.18 -3.92 16 29 C 0.02 0.19 9.81 101.05 0.99 1.18 16 30 C -0.25 -2.70 8.97 -39.33 -0.35 -3.05 16 31 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 32 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 33 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.13 0.96 6.26 -52.49 -0.33 0.63 16 35 H 0.14 1.40 6.15 -52.49 -0.32 1.08 16 36 H 0.14 2.48 7.03 -52.49 -0.37 2.11 16 37 H 0.12 1.74 4.10 -52.49 -0.22 1.52 16 38 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 39 H 0.04 1.01 6.85 -51.93 -0.36 0.66 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.12 1.86 8.07 -51.93 -0.42 1.44 16 42 H 0.09 1.21 6.09 -51.93 -0.32 0.89 16 43 H 0.15 2.16 8.06 -52.48 -0.42 1.74 16 44 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.20 1.55 8.06 -52.49 -0.42 1.13 16 46 H 0.06 0.37 7.65 -51.93 -0.40 -0.02 16 47 H 0.06 0.39 7.68 -51.93 -0.40 -0.01 16 48 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.14 1.23 6.31 -52.49 -0.33 0.90 16 LS Contribution 413.75 15.07 6.24 6.24 Total: -1.00 -37.35 413.75 -6.92 -44.28 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.32 Total: 3.71 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -2.26 Total: -8.02 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.33 Total: -39.90 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.24 Total: -23.43 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -37.35 -6.92 -44.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069347992.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.414 kcal (2) G-P(sol) polarization free energy of solvation -37.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds