Wall clock time and date at job start Tue Mar 31 2020 05:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00176 * 2 1 4 4 H 1.48496 * 109.47293 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46972 * 300.00577 * 3 2 1 6 6 H 1.48505 * 109.46651 * 60.00304 * 3 2 1 7 7 C 1.37877 * 120.00351 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00302 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99904 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47595 * 180.02562 * 9 7 2 11 11 C 1.46496 * 120.00098 * 270.00473 * 10 9 7 12 12 C 1.50701 * 109.46937 * 269.99878 * 11 10 9 13 13 C 1.34508 * 125.79338 * 89.71634 * 12 11 10 14 14 C 1.41378 * 106.84314 * 179.88824 * 13 12 11 15 15 C 1.34513 * 106.84088 * 0.37425 * 14 13 12 16 16 O 1.34301 * 108.41902 * 359.77003 * 15 14 13 17 17 C 1.34778 * 119.99765 * 90.00051 * 10 9 7 18 18 O 1.21278 * 119.99686 * 180.02562 * 17 10 9 19 19 C 1.50701 * 120.00093 * 0.02562 * 17 10 9 20 20 C 1.52996 * 109.47031 * 180.02562 * 19 17 10 21 21 C 1.50701 * 109.47031 * 179.97438 * 20 19 17 22 22 N 1.30927 * 126.40282 * 89.98483 * 21 20 19 23 23 C 1.35397 * 105.57951 * 180.02562 * 22 21 20 24 24 C 1.47728 * 126.45065 * 179.97438 * 23 22 21 25 25 C 1.35990 * 125.93713 * 180.02562 * 24 23 22 26 26 C 1.40820 * 106.74091 * 179.97438 * 25 24 23 27 27 C 1.34825 * 107.03731 * 0.02562 * 26 25 24 28 28 O 1.34199 * 108.67749 * 359.75282 * 27 26 25 29 29 N 1.31035 * 107.09979 * 359.97438 * 23 22 21 30 30 O 1.21293 * 110.04621 * 359.97438 * 29 23 22 31 31 H 0.96997 * 119.99886 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.46939 * 60.00107 * 9 7 2 33 33 H 1.09002 * 109.47137 * 300.00487 * 9 7 2 34 34 H 1.09003 * 109.47323 * 29.99370 * 11 10 9 35 35 H 1.08999 * 109.46975 * 149.99709 * 11 10 9 36 36 H 1.08003 * 126.58042 * 0.02562 * 13 12 11 37 37 H 1.08004 * 126.58195 * 180.16348 * 14 13 12 38 38 H 1.08003 * 125.79356 * 179.75449 * 15 14 13 39 39 H 1.09000 * 109.47397 * 59.99932 * 19 17 10 40 40 H 1.09007 * 109.47143 * 300.00154 * 19 17 10 41 41 H 1.08995 * 109.47403 * 60.00083 * 20 19 17 42 42 H 1.08998 * 109.47455 * 300.00191 * 20 19 17 43 43 H 1.07996 * 126.62787 * 0.02562 * 25 24 23 44 44 H 1.07994 * 126.48396 * 179.97438 * 26 25 24 45 45 H 1.07997 * 125.65729 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6792 -4.1694 -1.2692 12 6 1.7624 -5.2836 -1.7043 13 6 0.6669 -5.1462 -2.4726 14 6 0.1146 -6.4377 -2.6331 15 6 0.9009 -7.2859 -1.9464 16 8 1.8975 -6.5813 -1.3859 17 6 2.6410 -4.1249 1.1667 18 8 3.4294 -5.0464 1.1667 19 6 2.1509 -3.5525 2.4718 20 6 2.7975 -4.3077 3.6347 21 6 2.3079 -3.7349 4.9398 22 7 1.2546 -4.1245 5.6128 23 6 1.2089 -3.3303 6.7084 24 6 0.1977 -3.3765 7.7844 25 6 0.1616 -2.5727 8.8808 26 6 -0.9636 -2.9625 9.6326 27 6 -1.5529 -3.9751 8.9655 28 8 -0.8518 -4.2189 7.8475 29 7 2.2304 -2.5129 6.6347 30 8 2.8683 -2.7345 5.6271 31 1 -0.4850 0.8400 0.0004 32 1 0.6241 -2.5567 -0.8904 33 1 0.6248 -2.5571 0.8896 34 1 2.6869 -3.3878 -2.0289 35 1 3.6886 -4.5594 -1.1388 36 1 0.2840 -4.2262 -2.8890 37 1 -0.7710 -6.6937 -3.1959 38 1 0.7555 -8.3527 -1.8602 39 1 1.0672 -3.6549 2.5294 40 1 2.4197 -2.4977 2.5297 41 1 3.8810 -4.2049 3.5770 42 1 2.5291 -5.3626 3.5770 43 1 0.8603 -1.7869 9.1269 44 1 -1.2918 -2.5322 10.5672 45 1 -2.4441 -4.4997 9.2768 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069456967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:48 Heat of formation + Delta-G solvation = 69.376165 kcal Electronic energy + Delta-G solvation = -32462.771687 eV Core-core repulsion = 27838.814813 eV Total energy + Delta-G solvation = -4623.956874 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.60938 -42.81922 -42.20499 -39.30735 -36.07838 -35.40219 -34.51130 -33.35101 -32.87898 -32.54441 -31.54272 -30.29106 -29.62921 -27.39667 -26.44469 -24.72630 -24.53842 -23.12039 -22.61496 -21.71874 -21.37081 -20.69116 -20.26484 -18.68977 -18.47187 -18.02302 -17.21900 -17.04671 -16.66351 -16.30435 -16.28079 -15.95245 -15.46002 -15.18933 -15.13352 -14.67946 -14.40308 -14.01575 -13.45355 -13.25746 -13.17541 -12.90669 -12.73621 -12.62493 -12.50720 -12.48916 -12.39865 -12.26369 -12.14323 -11.98883 -11.54874 -11.35864 -11.18151 -11.01342 -10.91617 -10.82428 -10.41059 -10.26067 -10.17584 -9.88054 -9.60717 -9.31537 -8.66987 -8.65225 -8.22157 -7.95640 -6.26600 -4.35224 0.63776 1.34916 1.99548 2.07926 2.25919 2.67980 2.72630 2.88414 3.12058 3.17733 3.27419 3.30203 3.42117 3.46319 3.90650 4.12745 4.27312 4.64631 4.68038 4.74722 5.02586 5.03190 5.07327 5.13931 5.22255 5.32434 5.34410 5.43240 5.49255 5.53481 5.64288 5.73302 5.80066 5.83122 5.99208 6.05861 6.09258 6.09917 6.22382 6.25855 6.39690 6.58221 6.72580 6.80633 7.08191 7.33539 7.49304 7.67460 7.94274 8.01636 8.12953 8.66337 8.82224 9.33861 10.80162 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.007054 B = 0.002685 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3968.236825 B =10425.181548 C =12703.351160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.236 3.764 10 N -0.590 5.590 11 C 0.197 3.803 12 C -0.017 4.017 13 C -0.202 4.202 14 C -0.217 4.217 15 C -0.052 4.052 16 O -0.167 6.167 17 C 0.525 3.475 18 O -0.565 6.565 19 C -0.134 4.134 20 C -0.014 4.014 21 C 0.207 3.793 22 N -0.469 5.469 23 C 0.238 3.762 24 C 0.055 3.945 25 C -0.150 4.150 26 C -0.217 4.217 27 C -0.014 4.014 28 O -0.153 6.153 29 N -0.361 5.361 30 O 0.092 5.908 31 H 0.266 0.734 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.196 0.804 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 -8.921 9.351 12.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.083 0.917 9 C 0.116 3.884 10 N -0.320 5.320 11 C 0.073 3.927 12 C -0.068 4.068 13 C -0.222 4.222 14 C -0.236 4.236 15 C -0.120 4.120 16 O -0.062 6.062 17 C 0.313 3.687 18 O -0.446 6.446 19 C -0.175 4.175 20 C -0.053 4.053 21 C -0.013 4.013 22 N -0.202 5.202 23 C -0.031 4.031 24 C 0.003 3.997 25 C -0.173 4.173 26 C -0.236 4.236 27 C -0.084 4.084 28 O -0.047 6.047 29 N -0.068 5.068 30 O 0.029 5.971 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.131 0.869 35 H 0.109 0.891 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.213 0.787 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.176 0.824 44 H 0.175 0.825 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.763 -9.231 9.983 13.619 hybrid contribution -0.198 1.217 -0.166 1.244 sum -0.962 -8.014 9.817 12.709 Atomic orbital electron populations 1.69928 1.06057 1.27371 1.49211 1.24941 0.94823 0.99349 0.94541 0.86481 0.80227 0.83233 0.77834 1.19461 1.20804 1.20810 1.21512 0.93737 0.90247 1.52679 0.91709 1.19530 0.87431 0.82299 0.99118 1.48254 1.45669 1.34484 1.03553 1.19705 0.95241 0.90266 0.87509 1.23218 1.00149 0.83028 1.00431 1.21681 0.97245 0.98819 1.04441 1.21797 1.02909 0.93276 1.05658 1.23960 0.90131 0.97875 1.00036 1.84102 1.44217 1.18707 1.59141 1.20171 0.80775 0.82141 0.85594 1.90640 1.36031 1.30004 1.87875 1.21606 1.02640 1.02625 0.90616 1.20124 1.02589 1.00617 0.81978 1.28906 0.88442 0.86473 0.97459 1.72186 1.18005 1.25579 1.04407 1.22160 0.94552 0.92734 0.93612 1.18023 0.90184 0.96285 0.95187 1.21839 1.00267 1.01331 0.93827 1.21811 0.97923 1.00646 1.03266 1.24354 0.98475 1.00050 0.85511 1.84124 1.31969 1.49431 1.39140 1.74982 1.07177 1.20960 1.03658 1.85330 1.44204 1.43044 1.24514 0.92462 0.94291 0.94231 0.86943 0.89068 0.83357 0.83889 0.78700 0.88161 0.86665 0.86927 0.86451 0.82395 0.82469 0.77104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.62 13.29 55.43 0.74 -22.89 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 19.77 29.54 -169.99 -5.02 14.75 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.54 -13.11 9.28 -34.44 -0.32 -13.43 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.24 5.20 4.97 -5.19 -0.03 5.17 16 10 N -0.59 -11.43 2.44 -176.43 -0.43 -11.86 16 11 C 0.20 3.42 5.94 -5.20 -0.03 3.39 16 12 C -0.02 -0.29 6.90 -35.63 -0.25 -0.53 16 13 C -0.20 -3.27 10.81 -39.71 -0.43 -3.70 16 14 C -0.22 -3.08 10.91 -39.70 -0.43 -3.51 16 15 C -0.05 -0.72 12.09 29.42 0.36 -0.36 16 16 O -0.17 -2.87 10.65 5.71 0.06 -2.81 16 17 C 0.52 9.82 7.67 -10.98 -0.08 9.74 16 18 O -0.56 -11.27 15.56 5.56 0.09 -11.19 16 19 C -0.13 -2.19 4.23 -27.88 -0.12 -2.31 16 20 C -0.01 -0.19 5.13 -27.88 -0.14 -0.33 16 21 C 0.21 3.08 7.74 -12.97 -0.10 2.98 16 22 N -0.47 -7.74 11.58 -9.88 -0.11 -7.85 16 23 C 0.24 3.84 8.06 -156.04 -1.26 2.59 16 24 C 0.05 0.79 7.26 -36.51 -0.26 0.52 16 25 C -0.15 -1.77 10.82 -39.41 -0.43 -2.19 16 26 C -0.22 -1.98 10.89 -39.82 -0.43 -2.41 16 27 C -0.01 -0.13 12.08 29.52 0.36 0.23 16 28 O -0.15 -2.05 10.67 4.83 0.05 -1.99 16 29 N -0.36 -5.74 12.18 30.99 0.38 -5.36 16 30 O 0.09 1.39 11.29 17.99 0.20 1.59 16 31 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.04 0.92 6.44 -51.93 -0.33 0.58 16 34 H 0.11 1.83 8.07 -51.93 -0.42 1.41 16 35 H 0.09 1.56 7.42 -51.93 -0.39 1.17 16 36 H 0.15 2.31 8.06 -52.48 -0.42 1.89 16 37 H 0.14 1.65 8.06 -52.48 -0.42 1.22 16 38 H 0.20 1.87 8.06 -52.48 -0.42 1.45 16 39 H 0.10 1.68 7.40 -51.93 -0.38 1.29 16 40 H 0.12 1.96 8.00 -51.93 -0.42 1.55 16 41 H 0.11 1.36 8.10 -51.93 -0.42 0.94 16 42 H 0.12 1.56 8.10 -51.93 -0.42 1.13 16 43 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.21 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 404.83 15.07 6.10 6.10 Total: -1.00 -31.35 404.83 -6.93 -38.28 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.28 Total: 5.79 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -3.70 Total: -2.55 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.57 Total: -47.97 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.40 Total: -14.40 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.35 -6.93 -38.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069456967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.656 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds