Wall clock time and date at job start Tue Mar 31 2020 05:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31803 * 119.10640 * 2 1 4 4 C 1.32301 * 120.69350 * 179.78938 * 3 2 1 5 5 C 1.38776 * 119.07850 * 359.93271 * 4 3 2 6 6 C 1.37961 * 118.63309 * 359.96149 * 5 4 3 7 7 N 1.31690 * 119.10956 * 179.72597 * 2 1 3 8 8 C 1.50440 * 121.84880 * 180.25083 * 6 5 4 9 9 N 1.46706 * 110.35991 * 342.49784 * 8 6 5 10 10 C 1.46903 * 111.00234 * 288.94295 * 9 8 6 11 11 C 1.50703 * 109.47081 * 189.32382 * 10 9 8 12 12 O 1.21283 * 120.00155 * 5.96712 * 11 10 9 13 13 N 1.34774 * 119.99528 * 185.96530 * 11 10 9 14 14 C 1.46506 * 119.99802 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47377 * 89.99532 * 14 13 11 16 16 H 1.08008 * 119.99839 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00330 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99788 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00155 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47450 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.47354 * 119.99959 * 19 17 15 22 22 H 1.48500 * 109.47026 * 239.99760 * 19 17 15 23 23 C 1.46500 * 120.00531 * 0.02562 * 13 11 10 24 24 C 1.50700 * 109.46883 * 89.99801 * 23 13 11 25 25 C 1.34509 * 125.78831 * 90.00520 * 24 23 13 26 26 C 1.41384 * 106.84257 * 179.97438 * 25 24 23 27 27 C 1.34513 * 106.83765 * 359.97438 * 26 25 24 28 28 O 1.34303 * 125.78935 * 269.69026 * 24 23 13 29 29 C 1.47145 * 110.39848 * 52.46931 * 9 8 6 30 30 C 1.50413 * 119.47260 * 179.81930 * 5 4 3 31 31 H 1.09008 * 109.46874 * 90.00552 * 1 2 3 32 32 H 1.09006 * 109.47282 * 209.99855 * 1 2 3 33 33 H 1.08999 * 109.47485 * 330.00477 * 1 2 3 34 34 H 1.07998 * 120.46065 * 179.91400 * 4 3 2 35 35 H 1.08996 * 109.31776 * 222.22946 * 8 6 5 36 36 H 1.08997 * 109.17438 * 102.67952 * 8 6 5 37 37 H 1.09001 * 109.47194 * 309.32379 * 10 9 8 38 38 H 1.08998 * 109.46835 * 69.32821 * 10 9 8 39 39 H 1.09000 * 109.47130 * 209.99925 * 14 13 11 40 40 H 1.09008 * 109.46917 * 329.99787 * 14 13 11 41 41 H 0.96997 * 120.00035 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.47280 * 210.00297 * 23 13 11 43 43 H 1.09000 * 109.46799 * 330.00219 * 23 13 11 44 44 H 1.08004 * 126.57857 * 0.03691 * 25 24 23 45 45 H 1.08003 * 126.57933 * 179.97438 * 26 25 24 46 46 H 1.08001 * 125.78657 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.62130 * 169.09511 * 29 9 8 48 48 H 1.09001 * 109.61675 * 48.56218 * 29 9 8 49 49 H 1.09006 * 109.41137 * 283.54261 * 30 5 4 50 50 H 1.09005 * 109.41521 * 43.32089 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1482 1.1516 0.0000 4 6 3.4706 1.1882 0.0042 5 6 4.1784 -0.0055 0.0100 6 6 3.4740 -1.1917 0.0121 7 7 2.1477 -1.1505 0.0055 8 6 4.1675 -2.5267 0.0239 9 7 5.5695 -2.3772 -0.3816 10 6 5.6734 -2.0720 -1.8148 11 6 7.1164 -2.1516 -2.2420 12 8 7.9596 -2.5391 -1.4611 13 7 7.4699 -1.7921 -3.4919 14 6 8.8726 -1.8699 -3.9074 15 6 9.1487 -3.2313 -4.4916 16 1 8.3582 -3.9651 -4.5482 17 6 10.4104 -3.5402 -4.9540 18 7 11.3731 -2.6468 -4.8846 19 14 10.7524 -5.2274 -5.6788 20 1 9.5115 -6.0424 -5.6431 21 1 11.2063 -5.0794 -7.0850 22 1 11.8111 -5.9017 -4.8853 23 6 6.4515 -1.3234 -4.4350 24 6 6.3073 0.1720 -4.3165 25 6 7.0004 1.0871 -5.0175 26 6 6.5487 2.3574 -4.5918 27 6 5.6062 2.1425 -3.6564 28 8 5.4607 0.8169 -3.4972 29 6 6.2296 -1.3406 0.4276 30 6 5.6822 0.0259 0.0107 31 1 -0.3633 -0.0001 -1.0278 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5137 34 1 3.9921 2.1340 0.0028 35 1 3.6623 -3.2016 -0.6669 36 1 4.1255 -2.9430 1.0304 37 1 5.0859 -2.7930 -2.3833 38 1 5.2943 -1.0671 -2.0006 39 1 9.0722 -1.1051 -4.6580 40 1 9.5170 -1.7079 -3.0433 41 1 12.2606 -2.8640 -5.2102 42 1 6.7515 -1.5802 -5.4509 43 1 5.4980 -1.7997 -4.2064 44 1 7.7561 0.8894 -5.7633 45 1 6.8942 3.3163 -4.9490 46 1 5.0568 2.9064 -3.1263 47 1 7.3055 -1.3718 0.2554 48 1 6.0203 -1.5119 1.4835 49 1 6.0400 0.2695 -0.9898 50 1 6.0286 0.7844 0.7127 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069516446.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:40 Heat of formation + Delta-G solvation = 49.507001 kcal Electronic energy + Delta-G solvation = -35101.351849 eV Core-core repulsion = 30710.085140 eV Total energy + Delta-G solvation = -4391.266709 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 370.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.43171 -41.70377 -39.56775 -37.85243 -35.22835 -34.31195 -33.29374 -32.87888 -32.70573 -31.24763 -30.21877 -29.19323 -28.27502 -27.02485 -25.51553 -24.95591 -23.43469 -23.32576 -22.52628 -21.57323 -20.60291 -20.07946 -18.50150 -18.05218 -17.37847 -16.84570 -16.53044 -16.31027 -16.04379 -15.93007 -15.51654 -15.26882 -14.96356 -14.62484 -14.35791 -14.12634 -13.91868 -13.68256 -13.51080 -13.42942 -13.01174 -12.84826 -12.70118 -12.62088 -12.59447 -12.43337 -12.34408 -12.22341 -12.05586 -11.66736 -11.60524 -11.40634 -11.26038 -10.91052 -10.67425 -10.63629 -10.60185 -10.21200 -9.79067 -9.68298 -9.57239 -9.24024 -9.02470 -8.48105 -8.38769 -8.33715 -7.84070 -6.08412 -4.13222 0.69395 0.85228 1.80948 2.74573 3.03677 3.28163 3.34216 3.37171 3.42035 3.46732 3.50931 3.72217 3.88167 4.06706 4.31416 4.42342 4.56357 4.64113 4.80966 4.89005 4.92670 5.00598 5.10433 5.11053 5.17165 5.23919 5.26523 5.27373 5.30719 5.35072 5.42452 5.49780 5.54022 5.59214 5.65265 5.80841 5.83469 5.86071 5.93128 6.10364 6.11085 6.21466 6.26522 6.63595 6.65271 6.81377 6.93060 7.03466 7.23492 7.38297 7.45112 7.87895 7.91103 8.17381 8.25702 8.85278 9.00803 9.52373 10.99779 Molecular weight = 370.18amu Principal moments of inertia in cm(-1) A = 0.011801 B = 0.003110 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.126940 B = 9001.004197 C =10329.639238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.307 3.693 3 N -0.520 5.520 4 C 0.155 3.845 5 C -0.181 4.181 6 C 0.149 3.851 7 N -0.512 5.512 8 C 0.100 3.900 9 N -0.497 5.497 10 C 0.020 3.980 11 C 0.513 3.487 12 O -0.513 6.513 13 N -0.594 5.594 14 C 0.249 3.751 15 C -0.527 4.527 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.191 3.809 24 C -0.027 4.027 25 C -0.191 4.191 26 C -0.209 4.209 27 C -0.052 4.052 28 O -0.179 6.179 29 C 0.047 3.953 30 C -0.114 4.114 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.166 0.834 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.033 0.967 40 H 0.044 0.956 41 H 0.263 0.737 42 H 0.117 0.883 43 H 0.080 0.920 44 H 0.151 0.849 45 H 0.145 0.855 46 H 0.195 0.805 47 H 0.109 0.891 48 H 0.079 0.921 49 H 0.088 0.912 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.483 9.773 6.867 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.039 3.961 3 N -0.235 5.235 4 C -0.012 4.012 5 C -0.185 4.185 6 C 0.002 3.998 7 N -0.227 5.227 8 C -0.029 4.029 9 N -0.218 5.218 10 C -0.111 4.111 11 C 0.299 3.701 12 O -0.388 6.388 13 N -0.327 5.327 14 C 0.130 3.870 15 C -0.566 4.566 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C 0.066 3.934 24 C -0.079 4.079 25 C -0.211 4.211 26 C -0.229 4.229 27 C -0.120 4.120 28 O -0.075 6.075 29 C -0.081 4.081 30 C -0.154 4.154 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.183 0.817 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.135 0.865 43 H 0.098 0.902 44 H 0.168 0.832 45 H 0.163 0.837 46 H 0.212 0.788 47 H 0.127 0.873 48 H 0.097 0.903 49 H 0.107 0.893 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.745 8.928 7.527 22.085 hybrid contribution 0.897 0.425 -0.882 1.328 sum -17.848 9.353 6.645 21.218 Atomic orbital electron populations 1.20533 0.85840 1.03956 1.03783 1.23201 0.98112 0.83544 0.91230 1.68254 1.09850 1.30502 1.14848 1.23131 0.89513 0.98009 0.90547 1.21148 0.98753 0.94870 1.03716 1.22384 0.89724 0.97265 0.90443 1.68230 1.09171 1.30486 1.14814 1.21215 0.86898 0.90809 1.04015 1.62376 1.11090 1.45472 1.02861 1.22335 0.96920 1.02069 0.89788 1.20076 0.89582 0.78237 0.82233 1.90661 1.51955 1.44706 1.51479 1.48321 1.10460 1.63139 1.10802 1.19314 0.74318 0.97101 0.96258 1.21457 0.96044 0.98965 1.40119 0.92245 1.24923 0.95892 0.97296 0.95882 1.69941 1.02293 1.34214 1.46811 0.86450 0.78424 0.84082 0.78518 1.19717 1.21021 1.20875 1.19880 0.93204 0.83369 0.96990 1.23319 0.94042 0.96260 0.94236 1.21708 1.03334 0.91724 1.04336 1.21824 1.00811 0.99085 1.01143 1.23887 1.02787 0.82695 1.02645 1.84000 1.51835 1.18709 1.52975 1.22437 1.01698 0.86545 0.97406 1.21075 0.89318 1.01154 1.03832 0.89767 0.89718 0.89813 0.81726 0.87859 0.87492 0.88346 0.91184 0.94907 0.93754 0.92748 0.86474 0.90191 0.83172 0.83746 0.78815 0.87317 0.90300 0.89349 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.32 36.01 0.37 -0.29 16 2 C 0.31 3.59 7.64 -157.28 -1.20 2.39 16 3 N -0.52 -6.23 10.34 -10.71 -0.11 -6.34 16 4 C 0.15 1.69 10.98 -17.15 -0.19 1.50 16 5 C -0.18 -2.10 5.10 -104.66 -0.53 -2.64 16 6 C 0.15 1.83 6.28 -82.44 -0.52 1.31 16 7 N -0.51 -6.43 10.24 -7.16 -0.07 -6.51 16 8 C 0.10 1.17 5.82 -5.21 -0.03 1.14 16 9 N -0.50 -7.03 4.71 -237.64 -1.12 -8.15 16 10 C 0.02 0.30 3.25 -4.97 -0.02 0.28 16 11 C 0.51 10.12 7.33 -10.99 -0.08 10.04 16 12 O -0.51 -12.16 14.20 5.56 0.08 -12.08 16 13 N -0.59 -11.85 2.44 -176.43 -0.43 -12.28 16 14 C 0.25 6.17 5.16 -5.19 -0.03 6.14 16 15 C -0.53 -14.30 9.39 -34.44 -0.32 -14.63 16 16 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 19 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.19 2.99 5.66 -5.19 -0.03 2.96 16 24 C -0.03 -0.41 6.76 -35.63 -0.24 -0.65 16 25 C -0.19 -2.83 10.81 -39.70 -0.43 -3.26 16 26 C -0.21 -2.63 10.91 -39.70 -0.43 -3.07 16 27 C -0.05 -0.61 12.09 29.42 0.36 -0.26 16 28 O -0.18 -2.48 9.05 5.71 0.05 -2.43 16 29 C 0.05 0.62 5.58 -3.70 -0.02 0.60 16 30 C -0.11 -1.32 5.20 -28.03 -0.15 -1.46 16 31 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.10 1.15 7.91 -51.93 -0.41 0.74 16 36 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.10 1.37 7.49 -51.93 -0.39 0.98 16 38 H 0.07 1.01 3.75 -51.93 -0.19 0.82 16 39 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 40 H 0.04 1.26 7.42 -51.92 -0.39 0.87 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.12 1.80 8.07 -51.93 -0.42 1.38 16 43 H 0.08 1.07 6.61 -51.93 -0.34 0.72 16 44 H 0.15 2.22 8.06 -52.48 -0.42 1.80 16 45 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 46 H 0.20 1.54 8.06 -52.49 -0.42 1.12 16 47 H 0.11 1.75 6.29 -51.93 -0.33 1.42 16 48 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 49 H 0.09 1.18 6.37 -51.93 -0.33 0.85 16 50 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 407.96 15.07 6.15 6.15 Total: -1.00 -33.68 407.96 -10.31 -43.99 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.99 Total: 4.65 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -3.59 Total: 1.76 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -1.00 Total: -58.39 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.13 Total: -14.51 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.68 -10.31 -43.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069516446.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.499 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds