Wall clock time and date at job start Tue Mar 31 2020 05:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99854 * 2 1 4 4 H 1.48496 * 109.46777 * 272.15559 * 3 2 1 5 5 H 1.48501 * 109.46938 * 32.15658 * 3 2 1 6 6 H 1.48502 * 109.46947 * 152.15609 * 3 2 1 7 7 C 1.38816 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99830 * 343.71305 * 7 2 1 9 9 N 1.36934 * 119.99756 * 163.71575 * 7 2 1 10 10 C 1.46926 * 120.62913 * 150.17581 * 9 7 2 11 11 C 1.53194 * 108.89220 * 126.29553 * 10 9 7 12 12 C 1.53347 * 109.14625 * 54.58354 * 11 10 9 13 13 N 1.46506 * 109.40672 * 178.67919 * 12 11 10 14 14 C 1.34774 * 120.00072 * 275.12153 * 13 12 11 15 15 O 1.21362 * 119.99683 * 359.97438 * 14 13 12 16 16 C 1.49331 * 120.00228 * 179.97438 * 14 13 12 17 17 O 1.21395 * 119.99833 * 0.02562 * 16 14 13 18 18 N 1.34776 * 120.00510 * 179.97438 * 16 14 13 19 19 C 1.39896 * 120.00236 * 185.00815 * 18 16 14 20 20 C 1.38881 * 120.04955 * 19.09367 * 19 18 16 21 21 C 1.38130 * 120.01080 * 179.97438 * 20 19 18 22 22 C 1.38464 * 120.11473 * 0.02562 * 21 20 19 23 23 F 1.35097 * 119.95620 * 180.02562 * 22 21 20 24 24 C 1.38649 * 120.09522 * 359.97438 * 22 21 20 25 25 F 1.35098 * 120.00697 * 180.02562 * 24 22 21 26 26 C 1.38467 * 119.98848 * 359.72766 * 24 22 21 27 27 F 1.35105 * 120.05949 * 180.29059 * 26 24 22 28 28 C 1.53040 * 109.60724 * 298.70418 * 12 11 10 29 29 C 1.46925 * 120.63320 * 330.15365 * 9 7 2 30 30 H 0.96992 * 120.00060 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.59072 * 246.15536 * 10 9 7 32 32 H 1.09007 * 109.58683 * 6.43716 * 10 9 7 33 33 H 1.09005 * 109.49237 * 174.65825 * 11 10 9 34 34 H 1.08994 * 109.49779 * 294.75519 * 11 10 9 35 35 H 1.08999 * 109.43993 * 58.75503 * 12 11 10 36 36 H 0.97003 * 119.99570 * 95.11024 * 13 12 11 37 37 H 0.97006 * 119.99404 * 5.00890 * 18 16 14 38 38 H 1.08000 * 119.99834 * 359.97438 * 20 19 18 39 39 H 1.08004 * 119.94800 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.50002 * 301.42830 * 28 12 11 41 41 H 1.08998 * 109.52766 * 181.34210 * 28 12 11 42 42 H 1.08997 * 109.58415 * 353.41725 * 29 9 7 43 43 H 1.09003 * 109.58367 * 113.70286 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4520 2.0727 -1.3991 5 1 1.4711 2.6391 0.7452 6 1 3.5698 1.4275 0.6539 7 6 2.0103 -1.2022 0.0005 8 1 1.5028 -2.1186 0.2633 9 7 3.3385 -1.2260 -0.3320 10 6 4.2363 -2.2364 0.2440 11 6 4.9601 -2.9631 -0.8939 12 6 5.6607 -1.9304 -1.7850 13 7 6.3811 -2.6215 -2.8573 14 6 7.6254 -3.0911 -2.6394 15 8 8.1494 -2.9409 -1.5551 16 6 8.3595 -3.7960 -3.7322 17 8 7.8355 -3.9457 -4.8170 18 7 9.6041 -4.2651 -3.5146 19 6 10.3320 -4.8317 -4.5663 20 6 9.9723 -4.5690 -5.8818 21 6 10.6919 -5.1285 -6.9197 22 6 11.7721 -5.9521 -6.6514 23 9 12.4740 -6.4971 -7.6690 24 6 12.1352 -6.2174 -5.3399 25 9 13.1898 -7.0209 -5.0801 26 6 11.4205 -5.6539 -4.2963 27 9 11.7767 -5.9067 -3.0179 28 6 4.6202 -0.9882 -2.3948 29 6 3.8927 -0.2421 -1.2719 30 1 -0.4850 0.8400 -0.0004 31 1 4.9671 -1.7500 0.8902 32 1 3.6553 -2.9533 0.8243 33 1 5.6978 -3.6486 -0.4765 34 1 4.2366 -3.5231 -1.4862 35 1 6.3661 -1.3539 -1.1866 36 1 5.9623 -2.7413 -3.7241 37 1 9.9951 -4.2099 -2.6285 38 1 9.1298 -3.9272 -6.0933 39 1 10.4115 -4.9231 -7.9423 40 1 3.9000 -1.5669 -2.9732 41 1 5.1170 -0.2696 -3.0466 42 1 3.0847 0.3555 -1.6939 43 1 4.5935 0.4085 -0.7487 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069652816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:45 Heat of formation + Delta-G solvation = -133.471069 kcal Electronic energy + Delta-G solvation = -32825.008850 eV Core-core repulsion = 27650.399119 eV Total energy + Delta-G solvation = -5174.609730 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.124 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.27787 -49.69601 -48.96101 -41.65350 -39.92602 -38.64468 -37.77351 -35.77547 -34.70322 -32.31008 -31.21619 -30.61167 -30.43881 -30.06748 -26.28570 -24.77001 -24.12255 -23.31850 -22.91658 -21.83597 -20.79930 -20.07442 -19.47217 -18.85417 -18.62316 -18.04996 -17.37815 -17.06590 -16.93333 -16.68599 -16.33374 -16.17006 -16.01320 -15.88456 -15.42066 -15.14166 -15.05172 -14.90029 -14.61167 -14.27797 -14.25598 -13.93971 -13.77513 -13.29443 -13.20418 -13.08185 -12.79135 -12.50338 -12.43397 -12.14764 -11.93924 -11.82948 -11.21668 -11.11569 -10.97808 -10.70884 -10.44225 -10.21823 -10.04718 -9.81066 -9.57652 -9.56594 -9.18876 -8.85782 -8.72732 -7.04839 -6.00403 -3.41785 -0.06018 0.10134 0.98457 1.64114 2.46069 2.76390 2.82152 3.05598 3.24422 3.42886 3.44516 3.47458 3.60863 3.84614 3.94840 4.07507 4.43390 4.45338 4.80129 4.85412 4.95187 5.06355 5.13682 5.19172 5.28655 5.34652 5.47218 5.48146 5.67422 5.77827 5.89508 6.00448 6.01721 6.12166 6.18328 6.26757 6.40360 6.45372 6.53036 6.55480 6.76974 6.90461 7.20035 7.65352 7.90521 8.27206 8.85982 9.63982 10.00886 11.15438 Molecular weight = 371.12amu Principal moments of inertia in cm(-1) A = 0.027943 B = 0.001680 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.798520 B =16661.819680 C =17114.636289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 0.887 3.113 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.262 4.262 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.151 3.849 11 C -0.143 4.143 12 C 0.147 3.853 13 N -0.684 5.684 14 C 0.508 3.492 15 O -0.513 6.513 16 C 0.515 3.485 17 O -0.490 6.490 18 N -0.638 5.638 19 C 0.141 3.859 20 C -0.096 4.096 21 C -0.106 4.106 22 C 0.077 3.923 23 F -0.119 7.119 24 C 0.059 3.941 25 F -0.113 7.113 26 C 0.063 3.937 27 F -0.114 7.114 28 C -0.142 4.142 29 C 0.127 3.873 30 H 0.263 0.737 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.411 0.589 37 H 0.432 0.568 38 H 0.184 0.816 39 H 0.161 0.839 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.016 -9.866 -14.002 29.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.718 3.282 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.194 1.194 7 C -0.390 4.390 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.024 3.976 11 C -0.183 4.183 12 C 0.045 3.955 13 N -0.336 5.336 14 C 0.287 3.713 15 O -0.389 6.389 16 C 0.298 3.702 17 O -0.364 6.364 18 N -0.284 5.284 19 C 0.044 3.956 20 C -0.116 4.116 21 C -0.125 4.125 22 C 0.056 3.944 23 F -0.098 7.098 24 C 0.037 3.963 25 F -0.091 7.091 26 C 0.040 3.960 27 F -0.093 7.093 28 C -0.182 4.182 29 C 0.001 3.999 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.247 0.753 37 H 0.271 0.729 38 H 0.201 0.799 39 H 0.179 0.821 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 23.837 -9.766 -13.862 29.253 hybrid contribution 0.934 0.487 0.100 1.058 sum 24.771 -9.279 -13.763 29.818 Atomic orbital electron populations 1.69787 1.05703 1.26617 1.53165 1.25362 0.95305 0.97714 0.99212 0.86908 0.79918 0.84361 0.77025 1.21600 1.23114 1.19358 1.18921 0.82804 0.94429 1.42850 0.89626 1.44385 1.06561 1.33988 1.48059 1.20896 0.92460 0.91610 0.92590 1.22482 0.99288 0.97813 0.98746 1.21333 0.93295 0.93441 0.87441 1.46162 1.14189 1.55532 1.17680 1.19540 0.83268 0.81031 0.87471 1.90823 1.67285 1.56318 1.24489 1.20666 0.81195 0.79160 0.89155 1.90678 1.66409 1.54313 1.24972 1.43066 1.14931 1.57263 1.13099 1.17600 0.92432 0.96133 0.89436 1.21670 1.01487 1.00097 0.88359 1.21164 0.93113 0.96292 1.01955 1.17412 0.94787 0.99738 0.82463 1.91573 1.77311 1.83886 1.56992 1.17212 0.89816 0.97649 0.91604 1.91584 1.52886 1.70118 1.94507 1.16890 0.98179 1.01751 0.79156 1.91575 1.91205 1.92630 1.33868 1.22386 0.97395 0.98476 0.99896 1.21377 0.96717 0.92112 0.89718 0.92677 0.95521 0.91324 0.92031 0.91426 0.89177 0.75268 0.72890 0.79938 0.82125 0.90749 0.91889 0.90375 0.95146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.15 13.97 55.49 0.78 -26.37 16 2 C 0.02 0.65 5.29 -17.43 -0.09 0.55 16 3 Si 0.89 21.53 24.29 -169.99 -4.13 17.40 16 4 H -0.29 -6.67 6.64 56.52 0.38 -6.29 16 5 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.27 -6.37 6.40 56.52 0.36 -6.01 16 7 C -0.26 -7.00 10.05 -15.06 -0.15 -7.15 16 8 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 9 N -0.61 -13.50 2.75 -172.31 -0.47 -13.97 16 10 C 0.15 2.80 6.50 -3.71 -0.02 2.78 16 11 C -0.14 -2.19 5.68 -26.45 -0.15 -2.34 16 12 C 0.15 2.07 2.42 -67.73 -0.16 1.91 16 13 N -0.68 -7.76 5.07 -54.08 -0.27 -8.03 16 14 C 0.51 5.76 7.85 -11.64 -0.09 5.67 16 15 O -0.51 -7.00 16.14 5.49 0.09 -6.91 16 16 C 0.52 4.89 7.74 -11.64 -0.09 4.80 16 17 O -0.49 -4.90 13.33 5.46 0.07 -4.83 16 18 N -0.64 -5.21 5.34 -10.24 -0.05 -5.27 16 19 C 0.14 1.11 6.52 -83.63 -0.55 0.56 16 20 C -0.10 -0.65 8.80 -39.38 -0.35 -1.00 16 21 C -0.11 -0.59 10.01 -39.54 -0.40 -0.99 16 22 C 0.08 0.56 7.30 -39.35 -0.29 0.28 16 23 F -0.12 -0.97 17.18 2.25 0.04 -0.93 16 24 C 0.06 0.49 7.31 -39.35 -0.29 0.21 16 25 F -0.11 -1.09 17.09 2.25 0.04 -1.05 16 26 C 0.06 0.52 7.31 -39.19 -0.29 0.24 16 27 F -0.11 -1.03 16.65 2.25 0.04 -0.99 16 28 C -0.14 -2.15 5.55 -26.61 -0.15 -2.29 16 29 C 0.13 2.53 4.17 -3.71 -0.02 2.52 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 1.28 7.93 -51.92 -0.41 0.87 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.36 7.58 -51.93 -0.39 0.96 16 36 H 0.41 4.00 8.07 -40.82 -0.33 3.67 16 37 H 0.43 3.22 7.82 -40.82 -0.32 2.90 16 38 H 0.18 1.27 5.35 -52.49 -0.28 0.99 16 39 H 0.16 0.49 8.06 -52.48 -0.42 0.07 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 1.71 4.51 -51.93 -0.23 1.48 16 43 H 0.03 0.60 6.87 -51.93 -0.36 0.25 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -30.59 367.75 -5.90 -36.50 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -4.49 Total: 3.18 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -3.08 Total: 5.74 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.03 Total: -53.64 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.16 Total: -11.74 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.11 Total: -2.97 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.13 Total: 17.40 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.59 -5.90 -36.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069652816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.974 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds