Wall clock time and date at job start Tue Mar 31 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00181 * 2 1 4 4 H 1.48499 * 109.46967 * 269.99843 * 3 2 1 5 5 H 1.48497 * 109.46963 * 29.99988 * 3 2 1 6 6 H 1.48497 * 109.47057 * 149.99990 * 3 2 1 7 7 C 1.37881 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99785 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00273 * 179.97438 * 7 2 1 10 10 N 1.46492 * 109.47049 * 180.02562 * 9 7 2 11 11 C 1.46504 * 120.00199 * 85.00654 * 10 9 7 12 12 C 1.50707 * 109.46520 * 274.99921 * 11 10 9 13 13 C 1.38227 * 119.62024 * 94.97709 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.78495 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61172 * 274.99461 * 12 11 10 18 18 S 1.65604 * 120.00049 * 265.00049 * 10 9 7 19 19 O 1.42096 * 106.39980 * 23.53825 * 18 10 9 20 20 O 1.42097 * 106.40023 * 156.46405 * 18 10 9 21 21 C 1.76207 * 107.21527 * 270.00245 * 18 10 9 22 22 C 1.33346 * 125.18618 * 90.00222 * 21 18 10 23 23 C 1.38472 * 114.92652 * 179.97438 * 22 21 18 24 24 C 1.33506 * 114.88801 * 359.97438 * 23 22 21 25 25 Cl 1.73593 * 125.21250 * 180.02562 * 24 23 22 26 26 S 1.75883 * 125.18724 * 269.69032 * 21 18 10 27 27 H 0.97004 * 120.00077 * 0.02562 * 1 2 3 28 28 H 1.09009 * 109.46812 * 60.00093 * 9 7 2 29 29 H 1.08998 * 109.47008 * 300.00576 * 9 7 2 30 30 H 1.08993 * 109.47601 * 154.99498 * 11 10 9 31 31 H 1.08997 * 109.47191 * 34.99031 * 11 10 9 32 32 H 1.07998 * 120.41916 * 359.97438 * 13 12 11 33 33 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 34 34 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 35 35 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 36 36 H 1.07994 * 122.53824 * 359.95272 * 22 21 18 37 37 H 1.08006 * 122.55771 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9997 -2.5753 0.0001 11 6 4.1393 -3.3031 -1.2637 12 6 2.8168 -3.9232 -1.6348 13 6 1.9647 -3.2532 -2.4926 14 6 0.7526 -3.8345 -2.8310 15 6 0.4369 -5.0689 -2.2838 16 6 1.3393 -5.6792 -1.4335 17 7 2.4858 -5.0986 -1.1372 18 16 4.3941 -3.3141 1.4288 19 8 3.6692 -2.6350 2.4450 20 8 4.2875 -4.7125 1.2002 21 6 6.0990 -2.9879 1.7313 22 6 6.5729 -1.9398 2.4060 23 6 7.9523 -1.8929 2.5176 24 6 8.5981 -2.9046 1.9330 25 17 10.3215 -3.1118 1.9093 26 16 7.4349 -3.9990 1.1961 27 1 -0.4850 0.8401 -0.0004 28 1 3.8752 -0.6797 0.8895 29 1 3.8745 -0.6809 -0.8905 30 1 4.8890 -4.0862 -1.1513 31 1 4.4496 -2.6129 -2.0481 32 1 2.2412 -2.2905 -2.8964 33 1 0.0685 -3.3359 -3.5018 34 1 -0.5003 -5.5495 -2.5227 35 1 1.1027 -6.6424 -1.0064 36 1 5.9296 -1.1847 2.8328 37 1 8.4667 -1.0983 3.0380 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069653723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:45 Heat of formation + Delta-G solvation = 9.327739 kcal Electronic energy + Delta-G solvation = -27044.254285 eV Core-core repulsion = 23067.214652 eV Total energy + Delta-G solvation = -3977.039633 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 372.016 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -39.61149 -38.22390 -36.94324 -36.60338 -35.99565 -35.24776 -32.63284 -31.82820 -31.02687 -29.76361 -28.18947 -25.54135 -24.51989 -22.94794 -22.13485 -21.43035 -20.46721 -19.19223 -17.89190 -17.13925 -16.86185 -16.33880 -16.15882 -15.80510 -15.34962 -15.19361 -14.84729 -14.38089 -14.09539 -13.77797 -13.57754 -13.27784 -13.03070 -12.95633 -12.74143 -12.41296 -12.38521 -12.02155 -11.87209 -11.78850 -11.68380 -11.47714 -11.28885 -11.15717 -11.01590 -10.91213 -10.68286 -10.57087 -10.30637 -9.61878 -9.26887 -9.23316 -8.90648 -8.78209 -8.65186 -8.46939 -8.20791 -6.11074 -4.10057 0.16734 0.67638 0.90206 1.45469 1.68075 1.86362 1.91487 2.20066 3.20598 3.28875 3.30238 3.52727 4.21534 4.33849 4.43708 4.78371 4.85088 4.94977 5.11516 5.17431 5.22941 5.34199 5.45607 5.52296 5.61090 5.62575 5.78320 5.83535 5.97538 6.10349 6.15146 6.30685 6.59943 6.67223 6.76397 6.93561 7.20298 7.26052 7.51214 8.44754 8.59519 8.96087 9.47282 11.01900 Molecular weight = 372.02amu Principal moments of inertia in cm(-1) A = 0.010095 B = 0.004036 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.016218 B = 6935.331698 C = 8764.980275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.866 3.134 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.080 0.920 9 C 0.221 3.779 10 N -0.967 5.967 11 C 0.184 3.816 12 C 0.112 3.888 13 C -0.116 4.116 14 C -0.079 4.079 15 C -0.175 4.175 16 C 0.085 3.915 17 N -0.460 5.460 18 S 2.699 3.301 19 O -0.930 6.930 20 O -0.934 6.934 21 C -0.777 4.777 22 C 0.003 3.997 23 C -0.143 4.143 24 C -0.126 4.126 25 Cl -0.009 7.009 26 S 0.261 5.739 27 H 0.264 0.736 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.147 0.853 36 H 0.164 0.836 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.826 -5.984 -2.603 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.693 3.307 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.098 0.902 9 C 0.099 3.901 10 N -0.806 5.806 11 C 0.057 3.943 12 C -0.028 4.028 13 C -0.137 4.137 14 C -0.105 4.105 15 C -0.195 4.195 16 C -0.072 4.072 17 N -0.169 5.169 18 S 2.781 3.219 19 O -0.920 6.920 20 O -0.924 6.924 21 C -0.975 4.975 22 C -0.031 4.031 23 C -0.177 4.177 24 C -0.272 4.272 25 Cl 0.020 6.980 26 S 0.525 5.475 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.165 0.835 36 H 0.182 0.818 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 15.071 -8.125 -2.319 17.278 hybrid contribution 0.280 3.202 0.247 3.223 sum 15.351 -4.923 -2.072 16.253 Atomic orbital electron populations 1.69886 1.06119 1.26839 1.50122 1.24816 0.94665 0.98550 0.94582 0.87021 0.80680 0.84489 0.78554 1.20095 1.20952 1.18883 1.21309 0.88763 0.95034 1.51219 0.90152 1.19608 0.96560 0.76315 0.97658 1.57329 1.77738 1.25659 1.19866 1.19941 0.92638 0.94757 0.86961 1.21439 0.97377 0.90762 0.93215 1.21865 0.94385 0.99600 0.97843 1.21466 0.96171 0.94531 0.98353 1.22040 1.00650 0.96962 0.99847 1.22597 0.89854 0.99499 0.95274 1.67551 1.18436 1.10180 1.20722 1.02284 0.72116 0.73878 0.73579 1.93622 1.67084 1.75261 1.56026 1.93630 1.85027 1.28681 1.85091 1.36851 1.30517 1.10286 1.19811 1.19914 0.94552 0.95652 0.92935 1.20428 0.93988 0.99886 1.03353 1.25951 0.90557 1.02592 1.08128 1.98380 1.05721 1.96697 1.97248 1.84275 0.90649 1.21240 1.51351 0.92591 0.94554 0.94923 0.89598 0.88881 0.84779 0.85442 0.85661 0.83522 0.81833 0.82589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.96 55.43 0.77 -25.31 16 2 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 19.89 27.47 -169.99 -4.67 15.22 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 7 C -0.52 -13.83 8.83 -34.44 -0.30 -14.13 16 8 H 0.08 2.39 7.27 -52.48 -0.38 2.01 16 9 C 0.22 4.80 4.19 -5.20 -0.02 4.78 16 10 N -0.97 -18.65 2.79 -116.95 -0.33 -18.98 16 11 C 0.18 3.05 5.68 -5.19 -0.03 3.02 16 12 C 0.11 2.08 5.58 -82.58 -0.46 1.62 16 13 C -0.12 -2.07 8.62 -39.44 -0.34 -2.41 16 14 C -0.08 -1.31 10.18 -39.28 -0.40 -1.71 16 15 C -0.17 -2.72 10.11 -39.44 -0.40 -3.12 16 16 C 0.09 1.45 11.18 -17.55 -0.20 1.25 16 17 N -0.46 -8.94 9.82 -9.47 -0.09 -9.04 16 18 S 2.70 52.58 5.74 -107.50 -0.62 51.97 16 19 O -0.93 -21.42 16.77 -57.17 -0.96 -22.38 16 20 O -0.93 -19.15 16.42 -57.17 -0.94 -20.09 16 21 C -0.78 -11.95 6.57 29.02 0.19 -11.75 16 22 C 0.00 0.05 9.84 -41.20 -0.41 -0.36 16 23 C -0.14 -1.64 10.13 -41.15 -0.42 -2.06 16 24 C -0.13 -1.46 7.10 29.08 0.21 -1.25 16 25 Cl -0.01 -0.09 29.29 -51.86 -1.52 -1.61 16 26 S 0.26 3.35 23.21 -107.50 -2.50 0.85 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.04 0.79 6.67 -51.92 -0.35 0.45 16 29 H 0.03 0.64 7.43 -51.93 -0.39 0.26 16 30 H 0.09 1.26 7.61 -51.93 -0.40 0.86 16 31 H 0.09 1.25 7.90 -51.93 -0.41 0.84 16 32 H 0.13 2.26 8.06 -52.49 -0.42 1.83 16 33 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 34 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.16 2.11 8.05 -52.49 -0.42 1.69 16 37 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -33.63 363.22 -11.67 -45.30 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.62 Total: 2.73 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -2.67 Total: -24.14 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.35 Total: -53.33 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -1.90 Total: -42.47 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.67 Total: 15.22 kcal Atomic # 16 Polarization: 55.93 SS G_CDS: -3.11 Total: 52.82 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.52 Total: -1.61 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.63 -11.67 -45.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069653723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.625 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds