Wall clock time and date at job start Tue Mar 31 2020 06:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46843 * 180.02562 * 9 7 2 11 11 O 1.42904 * 109.47050 * 180.02562 * 10 9 7 12 12 C 1.35895 * 116.99841 * 179.97438 * 11 10 9 13 13 C 1.38753 * 120.05705 * 359.72496 * 12 11 10 14 14 C 1.38126 * 119.94264 * 179.70206 * 13 12 11 15 15 C 1.38285 * 120.05819 * 0.59417 * 14 13 12 16 16 C 1.38252 * 120.10816 * 359.67750 * 15 14 13 17 17 C 1.50698 * 119.97059 * 179.97438 * 16 15 14 18 18 H 1.08992 * 109.33507 * 89.69232 * 17 16 15 19 19 N 1.46281 * 109.33822 * 209.20391 * 17 16 15 20 20 C 1.34919 * 121.21087 * 89.30035 * 19 17 16 21 21 O 1.21615 * 120.36832 * 183.71326 * 20 19 17 22 22 C 1.47352 * 119.25889 * 3.68965 * 20 19 17 23 23 C 1.39284 * 121.75969 * 193.61072 * 22 20 19 24 24 C 1.37901 * 119.54583 * 180.35007 * 23 22 20 25 25 C 1.38762 * 120.50301 * 359.97438 * 24 23 22 26 26 Cl 1.73602 * 119.73296 * 179.86731 * 25 24 23 27 27 C 1.38325 * 120.53184 * 359.89918 * 25 24 23 28 28 C 1.38351 * 119.64200 * 359.97438 * 27 25 24 29 29 N 1.39021 * 121.97846 * 180.28323 * 28 27 25 30 30 C 1.38164 * 120.05501 * 0.02766 * 16 15 14 31 31 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 32 32 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 33 33 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 34 34 H 1.09006 * 109.47053 * 299.99704 * 10 9 7 35 35 H 1.08997 * 109.47419 * 60.00089 * 10 9 7 36 36 H 1.07996 * 120.02964 * 359.97226 * 13 12 11 37 37 H 1.08007 * 119.97027 * 180.29253 * 14 13 12 38 38 H 1.07999 * 119.95163 * 179.70261 * 15 14 13 39 39 H 0.97001 * 119.39125 * 269.30542 * 19 17 16 40 40 H 1.08006 * 120.22610 * 0.32959 * 23 22 20 41 41 H 1.07995 * 119.74960 * 180.02562 * 24 23 22 42 42 H 1.07999 * 120.18377 * 180.02562 * 27 25 24 43 43 H 0.97000 * 120.74260 * 330.22598 * 29 28 27 44 44 H 1.07997 * 120.02751 * 180.02562 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 6 2.2451 -3.6621 -0.0172 11 8 1.5305 -4.8996 -0.0243 12 6 2.2706 -6.0394 -0.0297 13 6 3.6563 -5.9681 -0.0341 14 6 4.4063 -7.1281 -0.0334 15 6 3.7773 -8.3596 -0.0408 16 6 2.3967 -8.4332 -0.0421 17 6 1.7145 -9.7769 -0.0508 18 1 1.5554 -10.1074 0.9756 19 7 0.4214 -9.6592 -0.7243 20 6 0.3083 -9.8380 -2.0568 21 8 -0.7612 -9.6707 -2.6111 22 6 1.4953 -10.2378 -2.8331 23 6 1.5191 -10.1683 -4.2240 24 6 2.6520 -10.5611 -4.9051 25 6 3.7640 -11.0228 -4.2153 26 17 5.1785 -11.5154 -5.0931 27 6 3.7544 -11.0943 -2.8340 28 6 2.6261 -10.7013 -2.1363 29 7 2.5655 -10.7475 -0.7482 30 6 1.6421 -7.2759 -0.0367 31 1 -0.4850 0.8401 0.0040 32 1 0.6240 -2.5614 0.8771 33 1 0.6246 -2.5525 -0.9029 34 1 2.8725 -3.6002 -0.9065 35 1 2.8711 -3.6087 0.8735 36 1 4.1481 -5.0066 -0.0336 37 1 5.4850 -7.0731 -0.0321 38 1 4.3654 -9.2654 -0.0451 39 1 -0.3694 -9.4487 -0.2034 40 1 0.6562 -9.8096 -4.7654 41 1 2.6743 -10.5083 -5.9836 42 1 4.6231 -11.4541 -2.3028 43 1 3.0733 -11.4079 -0.2514 44 1 0.5637 -7.3339 -0.0373 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069657180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:52 Heat of formation + Delta-G solvation = -19.441645 kcal Electronic energy + Delta-G solvation = -30095.027837 eV Core-core repulsion = 25810.210037 eV Total energy + Delta-G solvation = -4284.817800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 372.103 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33661 -39.79655 -38.62179 -37.96224 -36.90775 -36.23505 -33.65772 -33.41072 -31.47150 -31.18287 -30.89223 -29.72782 -29.02105 -25.80743 -24.89407 -24.49843 -22.83708 -22.55856 -21.81082 -20.66424 -19.75523 -18.54931 -18.25184 -17.92054 -16.70904 -16.39846 -16.00956 -15.80004 -15.68866 -15.56690 -15.38318 -15.21650 -14.75194 -14.48505 -14.36150 -14.20837 -13.87114 -13.74859 -13.48039 -12.94620 -12.71330 -12.66421 -12.35756 -12.19616 -11.92907 -11.68779 -11.48212 -11.42254 -11.31973 -10.91688 -10.84167 -10.61602 -10.50201 -10.28943 -9.92230 -9.70599 -9.64448 -9.33507 -9.23997 -8.91552 -8.47676 -8.24831 -7.97101 -6.12752 -4.17741 0.37295 0.97457 1.20596 1.53745 1.65467 2.41600 2.74547 2.87846 3.25486 3.31574 3.34256 3.39452 3.73615 3.78002 4.16325 4.31207 4.37539 4.53618 4.55831 4.68422 4.82978 4.89442 4.92977 5.14560 5.23665 5.31226 5.34213 5.48806 5.50052 5.60765 5.76460 5.83435 5.93883 5.96886 5.97841 6.03752 6.33628 6.43077 6.46168 6.46423 6.48414 6.64301 6.79847 6.90575 7.04870 7.46035 7.60211 7.76367 7.92582 7.99213 8.20274 8.87676 9.46718 10.98762 Molecular weight = 372.10amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.002014 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.843839 B =13898.234140 C =14433.437357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.273 1.273 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.314 6.314 12 C 0.146 3.854 13 C -0.202 4.202 14 C -0.081 4.081 15 C -0.143 4.143 16 C -0.101 4.101 17 C 0.429 3.571 18 H 0.121 0.879 19 N -0.731 5.731 20 C 0.578 3.422 21 O -0.530 6.530 22 C -0.193 4.193 23 C -0.007 4.007 24 C -0.163 4.163 25 C 0.029 3.971 26 Cl -0.064 7.064 27 C -0.176 4.176 28 C 0.252 3.748 29 N -0.742 5.742 30 C -0.139 4.139 31 H 0.264 0.736 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.413 0.587 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.416 0.584 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.407 -28.508 -2.645 30.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.198 1.198 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.227 6.227 12 C 0.099 3.901 13 C -0.221 4.221 14 C -0.099 4.099 15 C -0.163 4.163 16 C -0.104 4.104 17 C 0.238 3.762 18 H 0.138 0.862 19 N -0.387 5.387 20 C 0.367 3.633 21 O -0.407 6.407 22 C -0.200 4.200 23 C -0.027 4.027 24 C -0.184 4.184 25 C 0.002 3.998 26 Cl -0.035 7.035 27 C -0.198 4.198 28 C 0.148 3.852 29 N -0.376 5.376 30 C -0.159 4.159 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.251 0.749 40 H 0.163 0.837 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.254 0.746 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.632 -28.241 -3.064 29.689 hybrid contribution 0.883 0.961 0.422 1.372 sum 9.516 -27.280 -2.643 29.012 Atomic orbital electron populations 1.69977 1.06108 1.27021 1.49546 1.24995 0.94913 0.99407 0.94875 0.86483 0.79744 0.82918 0.78217 1.20488 1.19755 1.21004 1.20953 0.93011 0.90178 1.52416 0.92382 1.19128 0.94159 0.88976 0.98915 1.23361 0.97128 0.80737 0.99650 1.86192 1.36526 1.13199 1.86783 1.19141 0.90097 0.87579 0.93297 1.21468 0.93226 1.00023 1.07407 1.20884 0.99525 0.91816 0.97696 1.20601 0.93191 0.97559 1.04906 1.20186 0.94173 0.93964 1.02049 1.19214 0.78220 0.85847 0.92960 0.86205 1.46258 1.11023 1.73274 1.08190 1.17890 0.88036 0.75718 0.81678 1.90849 1.29245 1.50928 1.69632 1.19731 0.93836 1.11969 0.94501 1.20975 0.97429 0.92327 0.91940 1.20890 0.92216 1.04397 1.00858 1.20896 0.88794 0.98345 0.91798 1.98391 1.39489 1.89592 1.76019 1.20387 0.97832 1.09424 0.92205 1.17539 0.91021 0.92661 0.83935 1.44528 1.52275 1.37954 1.02884 1.20125 1.00267 0.89208 1.06256 0.92661 0.95388 0.95357 0.93108 0.93064 0.85075 0.85985 0.86275 0.74895 0.83655 0.84328 0.84225 0.74581 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.53 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 10 C 0.07 1.38 4.68 37.16 0.17 1.55 16 11 O -0.31 -6.34 10.14 -19.41 -0.20 -6.54 16 12 C 0.15 2.43 6.69 -39.22 -0.26 2.16 16 13 C -0.20 -2.96 9.04 -39.43 -0.36 -3.32 16 14 C -0.08 -0.95 10.04 -39.61 -0.40 -1.35 16 15 C -0.14 -1.45 9.27 -39.56 -0.37 -1.82 16 16 C -0.10 -1.06 5.45 -104.64 -0.57 -1.63 16 17 C 0.43 3.17 4.28 -128.79 -0.55 2.62 16 18 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 19 N -0.73 -6.90 4.12 -59.13 -0.24 -7.14 16 20 C 0.58 7.27 7.87 -12.49 -0.10 7.17 16 21 O -0.53 -8.46 17.44 5.26 0.09 -8.37 16 22 C -0.19 -2.14 5.83 -104.88 -0.61 -2.75 16 23 C -0.01 -0.07 9.65 -39.32 -0.38 -0.45 16 24 C -0.16 -1.44 9.80 -39.51 -0.39 -1.83 16 25 C 0.03 0.25 6.33 -39.36 -0.25 0.00 16 26 Cl -0.06 -0.50 28.94 -51.86 -1.50 -2.00 16 27 C -0.18 -1.36 9.79 -39.51 -0.39 -1.75 16 28 C 0.25 2.18 6.24 -83.64 -0.52 1.66 16 29 N -0.74 -4.58 4.39 -56.15 -0.25 -4.82 16 30 C -0.14 -1.93 9.25 -39.43 -0.36 -2.30 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 1.03 7.65 -51.93 -0.40 0.63 16 35 H 0.05 1.02 7.68 -51.93 -0.40 0.62 16 36 H 0.13 1.92 6.30 -52.49 -0.33 1.59 16 37 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 38 H 0.12 0.90 7.39 -52.49 -0.39 0.51 16 39 H 0.41 3.36 8.84 -40.82 -0.36 3.00 16 40 H 0.15 1.46 7.84 -52.48 -0.41 1.04 16 41 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.42 1.31 8.96 -40.82 -0.37 0.94 16 44 H 0.13 1.74 7.32 -52.49 -0.38 1.35 16 LS Contribution 389.91 15.07 5.88 5.88 Total: -1.00 -33.74 389.91 -11.51 -45.24 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.11 Total: 2.11 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -5.89 Total: -14.84 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.25 Total: -37.63 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.10 Total: -14.91 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.74 -11.51 -45.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069657180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.802 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds