Wall clock time and date at job start Tue Mar 31 2020 05:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47184 * 2 1 4 4 C 1.35902 * 116.99976 * 180.02562 * 3 2 1 5 5 C 1.38726 * 120.05435 * 180.02562 * 4 3 2 6 6 C 1.38150 * 119.94259 * 180.02562 * 5 4 3 7 7 C 1.38260 * 120.05662 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.94831 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47059 * 89.99612 * 8 7 6 10 10 O 1.21288 * 119.99936 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00304 * 180.02562 * 9 8 7 12 12 C 1.39573 * 120.00246 * 180.02562 * 11 9 8 13 13 N 1.32271 * 119.72883 * 359.97438 * 12 11 9 14 14 C 1.31963 * 121.69355 * 180.02562 * 13 12 11 15 15 C 1.38087 * 120.95129 * 0.02562 * 14 13 12 16 16 C 1.38782 * 119.35318 * 359.68214 * 15 14 13 17 17 C 1.38795 * 118.44958 * 0.57949 * 16 15 14 18 18 O 1.35973 * 120.49983 * 179.70991 * 17 16 15 19 19 C 1.42906 * 116.99587 * 359.73087 * 18 17 16 20 20 C 1.53006 * 109.46748 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.46866 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99962 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00270 * 180.02562 * 21 20 19 24 24 N 1.31522 * 119.99834 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00496 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47325 * 59.99531 * 25 23 21 27 27 H 1.48496 * 109.47425 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47183 * 299.99726 * 25 23 21 29 29 C 1.38264 * 120.11198 * 0.24813 * 7 6 5 30 30 C 1.38152 * 120.05495 * 359.45490 * 29 7 6 31 31 H 1.09007 * 109.47142 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46731 * 299.99954 * 1 2 3 33 33 H 1.08997 * 109.47124 * 60.00326 * 1 2 3 34 34 H 1.09000 * 109.47215 * 239.99466 * 2 1 3 35 35 H 1.09002 * 109.47103 * 120.00149 * 2 1 3 36 36 H 1.08000 * 120.03402 * 359.97438 * 5 4 3 37 37 H 1.08006 * 119.97020 * 179.97438 * 6 5 4 38 38 H 1.09003 * 109.46833 * 329.99979 * 8 7 6 39 39 H 1.08993 * 109.47748 * 209.99977 * 8 7 6 40 40 H 0.97000 * 119.99844 * 359.97438 * 11 9 8 41 41 H 1.07992 * 119.52164 * 180.02562 * 14 13 12 42 42 H 1.07998 * 120.32147 * 179.97438 * 15 14 13 43 43 H 1.08006 * 120.77219 * 180.31535 * 16 15 14 44 44 H 1.09000 * 109.47490 * 59.99648 * 19 18 17 45 45 H 1.09001 * 109.47232 * 299.99002 * 19 18 17 46 46 H 1.08993 * 109.46955 * 299.99993 * 20 19 18 47 47 H 1.09000 * 109.47050 * 59.99822 * 20 19 18 48 48 H 0.96992 * 120.00032 * 180.02562 * 24 23 21 49 49 H 1.08003 * 119.97888 * 179.70769 * 29 7 6 50 50 H 1.07998 * 120.03047 * 180.25076 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 3.8851 2.8067 0.0000 6 6 5.2551 2.9850 -0.0011 7 6 6.0962 1.8877 -0.0032 8 6 7.5903 2.0851 -0.0050 9 6 8.0901 2.1496 1.4152 10 8 7.3100 2.0451 2.3380 11 7 9.4040 2.3234 1.6600 12 6 9.8670 2.3827 2.9754 13 7 9.0115 2.2681 3.9777 14 6 9.4066 2.3190 5.2357 15 6 10.7383 2.4956 5.5552 16 6 11.6726 2.6144 4.5358 17 6 11.2278 2.5629 3.2221 18 8 12.1063 2.6808 2.1910 19 6 13.4828 2.8628 2.5291 20 6 14.3122 2.9739 1.2482 21 6 15.7637 3.1665 1.6047 22 1 16.0645 3.2062 2.6413 23 6 16.7076 3.2931 0.6078 24 7 16.3413 3.2453 -0.6545 25 14 18.5069 3.5311 1.0497 26 1 18.9790 2.3696 1.8453 27 1 19.3119 3.6390 -0.1935 28 1 18.6602 4.7735 1.8486 29 6 5.5690 0.6096 -0.0095 30 6 4.1998 0.4259 -0.0022 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 3.2286 3.6642 0.0004 37 1 5.6693 3.9825 -0.0012 38 1 7.8332 3.0155 -0.5183 39 1 8.0664 1.2509 -0.5202 40 1 10.0280 2.4066 0.9220 41 1 8.6780 2.2211 6.0267 42 1 11.0504 2.5362 6.5883 43 1 12.7207 2.7482 4.7597 44 1 13.8294 2.0102 3.1132 45 1 13.5954 3.7748 3.1154 46 1 14.1996 2.0618 0.6622 47 1 13.9658 3.8263 0.6638 48 1 17.0054 3.3340 -1.3559 49 1 6.2281 -0.2460 -0.0159 50 1 3.7884 -0.5727 -0.0030 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069709665.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:24 Heat of formation + Delta-G solvation = -49.278268 kcal Electronic energy + Delta-G solvation = -31514.013964 eV Core-core repulsion = 27086.170853 eV Total energy + Delta-G solvation = -4427.843111 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 370.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.91766 -40.38583 -39.29333 -37.91464 -37.57480 -34.75991 -33.48114 -32.93681 -31.79837 -31.45214 -31.07717 -30.54059 -29.15889 -27.12719 -25.42146 -24.37943 -23.68004 -22.84041 -22.35481 -21.60525 -20.91187 -20.13056 -18.55284 -18.33602 -17.51119 -17.17961 -16.41925 -16.35321 -16.17521 -15.78034 -15.72990 -15.62081 -15.10394 -14.81006 -14.60070 -14.51468 -14.04776 -13.88603 -13.83540 -13.70207 -13.55165 -13.40672 -12.97417 -12.84890 -12.40772 -12.22088 -12.14998 -12.02797 -11.96722 -11.88441 -11.74487 -11.08799 -11.02026 -10.98472 -10.96508 -10.69853 -10.67585 -10.21347 -10.05391 -9.78322 -9.43391 -9.21012 -9.14996 -9.02369 -8.52708 -8.27367 -7.65515 -6.18658 -4.23747 1.18651 1.21587 1.21996 1.45322 2.74560 2.89287 2.93319 3.23314 3.28098 3.29100 3.52794 3.61735 4.01774 4.33205 4.47975 4.49080 4.52214 4.53226 4.66456 4.69180 4.84218 4.87648 4.95456 5.00910 5.09966 5.12917 5.16719 5.18177 5.31501 5.33108 5.37157 5.42257 5.46927 5.54131 5.62449 5.84703 5.85575 5.89104 6.05009 6.07941 6.16027 6.19137 6.36421 6.43225 6.53313 6.57251 6.63943 7.18229 7.29021 7.33815 7.51596 7.63270 7.84613 8.08798 8.13544 8.38339 8.81159 9.41244 10.92653 Molecular weight = 370.17amu Principal moments of inertia in cm(-1) A = 0.014605 B = 0.001564 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.742076 B =17895.338420 C =19390.571618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.128 3.872 5 C -0.151 4.151 6 C -0.063 4.063 7 C -0.101 4.101 8 C -0.098 4.098 9 C 0.503 3.497 10 O -0.471 6.471 11 N -0.654 5.654 12 C 0.329 3.671 13 N -0.444 5.444 14 C 0.074 3.926 15 C -0.161 4.161 16 C -0.149 4.149 17 C 0.067 3.933 18 O -0.316 6.316 19 C 0.066 3.934 20 C 0.027 3.973 21 C -0.530 4.530 22 H 0.058 0.942 23 C 0.063 3.937 24 N -0.889 5.889 25 Si 0.899 3.101 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 C -0.063 4.063 30 C -0.207 4.207 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.424 0.576 41 H 0.156 0.844 42 H 0.134 0.866 43 H 0.145 0.855 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.264 0.736 49 H 0.123 0.877 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.513 -5.152 2.227 26.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.083 3.917 5 C -0.169 4.169 6 C -0.081 4.081 7 C -0.101 4.101 8 C -0.138 4.138 9 C 0.288 3.712 10 O -0.340 6.340 11 N -0.302 5.302 12 C 0.096 3.904 13 N -0.159 5.159 14 C -0.082 4.082 15 C -0.182 4.182 16 C -0.175 4.175 17 C 0.015 3.985 18 O -0.228 6.228 19 C -0.008 4.008 20 C -0.010 4.010 21 C -0.568 4.568 22 H 0.076 0.924 23 C -0.140 4.140 24 N -0.526 5.526 25 Si 0.726 3.274 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.201 1.201 29 C -0.081 4.081 30 C -0.226 4.226 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.262 0.738 41 H 0.173 0.827 42 H 0.152 0.848 43 H 0.162 0.838 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.074 0.926 49 H 0.141 0.859 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -27.140 -5.211 2.227 27.726 hybrid contribution 2.637 0.046 0.302 2.655 sum -24.503 -5.164 2.529 25.169 Atomic orbital electron populations 1.21775 0.92773 1.02839 1.03521 1.22773 0.95828 0.82080 1.01443 1.86055 1.19227 1.29228 1.88742 1.18977 0.82081 0.94219 0.96463 1.20353 0.95076 0.94768 1.06736 1.20803 0.92127 0.98601 0.96577 1.19141 0.93609 0.93429 1.03969 1.20626 0.93363 1.05586 0.94190 1.20782 0.81518 0.77163 0.91718 1.90813 1.54048 1.43699 1.45451 1.43535 1.09599 1.71374 1.05724 1.17833 0.85881 1.00436 0.86247 1.67632 1.35179 1.13880 0.99187 1.22407 0.94433 0.99003 0.92361 1.21886 0.93888 1.02441 0.99973 1.21610 1.01481 1.03277 0.91149 1.19606 0.89506 1.00420 0.88967 1.86097 1.19633 1.86401 1.30693 1.23396 0.75496 0.99391 1.02506 1.19119 0.92739 0.98769 0.90374 1.20911 0.91193 1.51589 0.93091 0.92404 1.24970 0.99336 0.94840 0.94869 1.69951 1.34479 1.49142 0.99069 0.86544 0.84139 0.78850 0.77840 1.20079 1.21073 1.20066 1.20772 0.94322 0.96585 0.96407 1.21151 0.94212 0.97920 1.09306 0.90391 0.91500 0.91537 0.92060 0.92000 0.85275 0.85385 0.87554 0.87634 0.73822 0.82704 0.84839 0.83776 0.92975 0.92959 0.95349 0.95343 0.92589 0.85858 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.28 37.16 0.38 -0.40 16 2 C 0.05 0.38 5.46 37.16 0.20 0.58 16 3 O -0.32 -3.29 10.14 -19.43 -0.20 -3.48 16 4 C 0.13 1.41 6.69 -39.22 -0.26 1.15 16 5 C -0.15 -1.63 9.99 -39.43 -0.39 -2.03 16 6 C -0.06 -0.67 9.69 -39.61 -0.38 -1.06 16 7 C -0.10 -1.10 4.37 -104.60 -0.46 -1.56 16 8 C -0.10 -0.94 5.83 -29.03 -0.17 -1.11 16 9 C 0.50 6.93 7.79 -10.99 -0.09 6.84 16 10 O -0.47 -8.23 14.29 5.55 0.08 -8.15 16 11 N -0.65 -9.26 5.39 -11.29 -0.06 -9.32 16 12 C 0.33 5.41 7.45 -154.44 -1.15 4.26 16 13 N -0.44 -7.45 7.88 -12.22 -0.10 -7.55 16 14 C 0.07 1.03 11.17 -17.55 -0.20 0.83 16 15 C -0.16 -2.02 10.10 -39.44 -0.40 -2.42 16 16 C -0.15 -2.16 9.14 -39.17 -0.36 -2.52 16 17 C 0.07 1.10 6.72 -38.92 -0.26 0.84 16 18 O -0.32 -5.72 9.38 -19.66 -0.18 -5.91 16 19 C 0.07 1.29 4.70 37.16 0.17 1.46 16 20 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 21 C -0.53 -14.04 9.11 -34.44 -0.31 -14.35 16 22 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 23 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 24 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 25 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 29 C -0.06 -0.66 9.69 -39.60 -0.38 -1.05 16 30 C -0.21 -2.12 9.04 -39.43 -0.36 -2.48 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 35 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.11 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.11 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.42 5.23 8.04 -40.82 -0.33 4.90 16 41 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 43 H 0.14 1.94 6.44 -52.48 -0.34 1.61 16 44 H 0.05 0.97 7.69 -51.93 -0.40 0.57 16 45 H 0.05 0.97 7.71 -51.93 -0.40 0.57 16 46 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 50 H 0.13 1.02 6.30 -52.49 -0.33 0.68 16 LS Contribution 423.96 15.07 6.39 6.39 Total: -1.00 -33.87 423.96 -10.21 -44.08 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -7.20 Total: 3.91 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -4.66 Total: -10.90 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.58 Total: -41.44 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.30 Total: -17.54 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -33.87 -10.21 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069709665.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.196 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds