Wall clock time and date at job start Tue Mar 31 2020 06:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.70997 * 125.46738 * 2 1 4 4 C 1.75963 * 90.66677 * 179.97438 * 3 2 1 5 5 C 1.47125 * 125.22560 * 180.02562 * 4 3 2 6 6 C 1.36254 * 125.96005 * 354.90945 * 5 4 3 7 7 C 1.40746 * 106.72496 * 179.97438 * 6 5 4 8 8 C 1.34853 * 107.07301 * 359.97438 * 7 6 5 9 9 O 1.34238 * 108.72032 * 359.77272 * 8 7 6 10 10 N 1.30071 * 109.54896 * 359.97438 * 4 3 2 11 11 C 1.32642 * 115.83795 * 359.74410 * 10 4 3 12 12 C 1.47144 * 122.55822 * 180.29214 * 11 10 4 13 13 O 1.21666 * 120.00259 * 215.21719 * 12 11 10 14 14 N 1.34780 * 120.00140 * 35.21455 * 12 11 10 15 15 C 1.36984 * 119.99992 * 186.50759 * 14 12 11 16 16 H 1.08001 * 119.99446 * 249.23770 * 15 14 12 17 17 C 1.38903 * 120.00510 * 69.24358 * 15 14 12 18 18 N 1.31429 * 120.00334 * 58.35197 * 17 15 14 19 19 Si 1.86807 * 119.99540 * 238.35740 * 17 15 14 20 20 H 1.48493 * 109.47136 * 65.04432 * 19 17 15 21 21 H 1.48503 * 109.46756 * 185.04109 * 19 17 15 22 22 H 1.48492 * 109.47050 * 305.04249 * 19 17 15 23 23 C 1.39700 * 119.99902 * 6.50150 * 14 12 11 24 24 C 1.39019 * 120.06344 * 62.86285 * 23 14 12 25 25 C 1.38067 * 119.96580 * 179.70004 * 24 23 14 26 26 C 1.38295 * 120.10649 * 0.59679 * 25 24 23 27 27 C 1.38521 * 120.13451 * 359.67503 * 26 25 24 28 28 F 1.35101 * 119.98550 * 180.02562 * 27 26 25 29 29 C 1.38315 * 120.02893 * 0.03083 * 27 26 25 30 30 H 1.09000 * 109.47195 * 0.02697 * 1 2 3 31 31 H 1.08998 * 109.46924 * 120.02295 * 1 2 3 32 32 H 1.08996 * 109.46972 * 240.02298 * 1 2 3 33 33 H 1.08005 * 126.63810 * 359.96192 * 6 5 4 34 34 H 1.08003 * 126.46386 * 179.97438 * 7 6 5 35 35 H 1.08001 * 125.64060 * 180.02562 * 8 7 6 36 36 H 0.96991 * 120.00039 * 184.90840 * 18 17 15 37 37 H 1.07995 * 120.01731 * 359.97129 * 24 23 14 38 38 H 1.08001 * 119.94524 * 180.27576 * 25 24 23 39 39 H 1.07999 * 119.93489 * 179.70444 * 26 25 24 40 40 H 1.07996 * 120.05554 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4992 1.3927 0.0000 4 6 3.9441 0.3884 0.0008 5 6 5.3269 0.8910 0.0017 6 6 5.7037 2.1968 -0.0958 7 6 7.1104 2.2167 -0.0532 8 6 7.5210 0.9378 0.0674 9 8 6.4416 0.1406 0.1056 10 7 3.6020 -0.8665 0.0015 11 6 2.2982 -1.1102 0.0069 12 6 1.7476 -2.4747 0.0148 13 8 0.7198 -2.7195 -0.5884 14 7 2.3820 -3.4535 0.6901 15 6 1.9464 -4.7483 0.5897 16 1 1.4837 -5.2297 1.4385 17 6 2.0999 -5.4422 -0.6038 18 7 3.2977 -5.6057 -1.1196 19 14 0.6038 -6.1429 -1.4758 20 1 -0.2716 -5.0316 -1.9271 21 1 1.0429 -6.9361 -2.6519 22 1 -0.1489 -7.0179 -0.5415 23 6 3.4839 -3.1474 1.4925 24 6 3.3335 -2.3109 2.5926 25 6 4.4226 -2.0147 3.3878 26 6 5.6659 -2.5391 3.0847 27 6 5.8218 -3.3686 1.9864 28 9 7.0377 -3.8796 1.6934 29 6 4.7333 -3.6738 1.1894 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5142 -0.8898 32 1 -0.3633 -0.5135 0.8902 33 1 5.0495 3.0512 -0.1881 34 1 7.7419 3.0912 -0.1069 35 1 8.5481 0.6097 0.1278 36 1 3.3987 -6.0273 -1.9872 37 1 2.3643 -1.8964 2.8276 38 1 4.3044 -1.3684 4.2449 39 1 6.5169 -2.3018 3.7059 40 1 4.8544 -4.3208 0.3332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069774537.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:45 Heat of formation + Delta-G solvation = 32.273954 kcal Electronic energy + Delta-G solvation = -31845.426660 eV Core-core repulsion = 27441.434817 eV Total energy + Delta-G solvation = -4403.991842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 372.073 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.16769 -42.51332 -40.16562 -38.42057 -37.28258 -34.58385 -33.20894 -32.60732 -32.38513 -30.20428 -29.81776 -28.73670 -27.23630 -25.09462 -24.15829 -22.88617 -21.89645 -21.83027 -21.62780 -20.20168 -18.95426 -17.98448 -17.67833 -17.35639 -16.33086 -16.10214 -15.76514 -15.55416 -15.34791 -15.05080 -14.87269 -14.78346 -14.57391 -14.04058 -13.60518 -13.28045 -13.08252 -13.05868 -12.94028 -12.84420 -12.68789 -12.51744 -12.49876 -12.32550 -12.01150 -11.56009 -11.41486 -11.34028 -11.14455 -10.72176 -10.41750 -10.35120 -10.06942 -9.67896 -9.49002 -9.16156 -8.98316 -8.48942 -8.35455 -7.99281 -7.87766 -7.36787 -6.65464 -4.24586 0.35914 1.08141 1.65356 1.72463 1.93752 2.07317 2.38789 2.92757 3.10783 3.25317 3.36143 3.55055 3.84395 4.11003 4.17462 4.42708 4.60910 4.70402 4.85607 4.88091 5.02190 5.04683 5.18329 5.28605 5.50387 5.64501 5.66712 5.70664 5.78433 5.85065 5.85997 5.86927 6.09266 6.23232 6.27892 6.33238 6.51258 6.74206 6.91618 6.98426 7.02596 7.27968 7.42565 7.64324 7.76442 8.22567 8.72212 8.74566 9.15465 9.82546 10.18571 Molecular weight = 372.07amu Principal moments of inertia in cm(-1) A = 0.008914 B = 0.004913 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3140.465482 B = 5697.964842 C = 7465.160307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.193 4.193 3 S 0.179 5.821 4 C 0.089 3.911 5 C 0.069 3.931 6 C -0.184 4.184 7 C -0.215 4.215 8 C -0.023 4.023 9 O -0.143 6.143 10 N -0.389 5.389 11 C 0.028 3.972 12 C 0.563 3.437 13 O -0.528 6.528 14 N -0.387 5.387 15 C -0.415 4.415 16 H 0.088 0.912 17 C 0.127 3.873 18 N -0.769 5.769 19 Si 0.867 3.133 20 H -0.254 1.254 21 H -0.293 1.293 22 H -0.269 1.269 23 C 0.205 3.795 24 C -0.160 4.160 25 C -0.088 4.088 26 C -0.184 4.184 27 C 0.101 3.899 28 F -0.150 7.150 29 C -0.130 4.130 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.206 0.794 36 H 0.275 0.725 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.774 16.208 3.864 17.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.317 4.317 3 S 0.436 5.564 4 C -0.186 4.186 5 C 0.015 3.985 6 C -0.207 4.207 7 C -0.234 4.234 8 C -0.093 4.093 9 O -0.037 6.037 10 N -0.103 5.103 11 C -0.109 4.109 12 C 0.349 3.651 13 O -0.406 6.406 14 N -0.103 5.103 15 C -0.536 4.536 16 H 0.105 0.895 17 C -0.095 4.095 18 N -0.394 5.394 19 Si 0.690 3.310 20 H -0.178 1.178 21 H -0.219 1.219 22 H -0.194 1.194 23 C 0.114 3.886 24 C -0.181 4.181 25 C -0.107 4.107 26 C -0.203 4.203 27 C 0.082 3.918 28 F -0.129 7.129 29 C -0.151 4.151 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.223 0.777 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.602 16.204 3.433 17.191 hybrid contribution -0.319 -1.153 -0.595 1.336 sum 4.283 15.051 2.838 15.904 Atomic orbital electron populations 1.20302 0.85622 1.02048 1.05113 1.25765 1.02999 0.95338 1.07581 1.83290 0.96355 1.08636 1.68118 1.24126 0.93858 0.91090 1.09532 1.18949 0.83288 0.88549 1.07713 1.21704 0.95960 0.95173 1.07828 1.21658 0.94626 0.97876 1.09231 1.24299 0.91262 0.89380 1.04401 1.84278 1.13296 1.36843 1.69235 1.67332 1.15767 1.16450 1.10721 1.20906 0.86855 0.96962 1.06193 1.17627 0.83784 0.81260 0.82454 1.90670 1.23386 1.81294 1.45255 1.40658 1.22535 1.06500 1.40569 1.18328 1.46197 0.88316 1.00758 0.89489 1.25417 0.94895 0.92170 0.97045 1.70523 1.23960 1.29117 1.15797 0.87033 0.86190 0.79067 0.78740 1.17835 1.21922 1.19363 1.18127 0.87874 0.91585 0.91056 1.21141 0.98644 1.02256 0.96014 1.20512 0.91842 0.99418 0.98911 1.20756 0.98449 1.02355 0.98777 1.17542 0.80212 0.97615 0.96481 1.91421 1.42375 1.85781 1.93324 1.21485 0.90328 1.02445 1.00805 0.91666 0.88600 0.89818 0.83044 0.82958 0.77732 0.91394 0.87075 0.86399 0.86287 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 9.24 36.01 0.33 -0.70 16 2 C -0.19 -3.25 6.41 -35.00 -0.22 -3.47 16 3 S 0.18 2.38 22.89 -107.50 -2.46 -0.08 16 4 C 0.09 1.51 7.44 -14.69 -0.11 1.40 16 5 C 0.07 1.07 7.24 -36.69 -0.27 0.80 16 6 C -0.18 -2.18 10.62 -39.35 -0.42 -2.60 16 7 C -0.21 -2.21 10.88 -39.84 -0.43 -2.64 16 8 C -0.02 -0.26 12.08 29.53 0.36 0.10 16 9 O -0.14 -2.31 10.67 4.57 0.05 -2.26 16 10 N -0.39 -8.01 8.60 -8.08 -0.07 -8.08 16 11 C 0.03 0.58 5.37 -84.59 -0.45 0.13 16 12 C 0.56 13.93 7.04 -12.64 -0.09 13.84 16 13 O -0.53 -14.00 14.84 5.22 0.08 -13.92 16 14 N -0.39 -9.90 2.61 -60.20 -0.16 -10.06 16 15 C -0.42 -11.36 8.09 -15.00 -0.12 -11.48 16 16 H 0.09 2.41 8.06 -52.49 -0.42 1.99 16 17 C 0.13 3.41 5.01 -17.48 -0.09 3.32 16 18 N -0.77 -20.79 12.85 55.49 0.71 -20.07 16 19 Si 0.87 21.03 29.25 -169.99 -4.97 16.06 16 20 H -0.25 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C 0.21 4.78 3.57 -83.73 -0.30 4.48 16 24 C -0.16 -3.21 8.41 -39.35 -0.33 -3.54 16 25 C -0.09 -1.53 10.04 -39.62 -0.40 -1.92 16 26 C -0.18 -3.29 10.02 -39.46 -0.40 -3.68 16 27 C 0.10 2.10 7.30 -39.45 -0.29 1.81 16 28 F -0.15 -3.06 17.27 2.25 0.04 -3.02 16 29 C -0.13 -3.07 9.70 -39.30 -0.38 -3.45 16 30 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 31 H 0.10 1.52 7.53 -51.93 -0.39 1.13 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.15 1.42 8.06 -52.48 -0.42 0.99 16 34 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.21 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.28 6.96 8.32 -40.82 -0.34 6.62 16 37 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.15 4.04 6.93 -52.49 -0.36 3.68 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -31.96 374.21 -8.44 -40.40 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -3.69 Total: 2.99 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -3.61 Total: -7.60 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.49 Total: -38.21 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.13 Total: -16.18 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.04 Total: -3.02 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.97 Total: 16.06 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.46 Total: -0.08 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.96 -8.44 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069774537.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.678 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds