Wall clock time and date at job start Tue Mar 31 2020 06:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86800 * 119.99542 * 2 1 4 4 H 1.48507 * 109.46960 * 239.99994 * 3 2 1 5 5 H 1.48500 * 109.47293 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47100 * 120.00049 * 3 2 1 7 7 C 1.39931 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99692 * 197.87455 * 7 2 1 9 9 C 1.41438 * 120.00248 * 17.88457 * 7 2 1 10 10 C 1.40781 * 120.17553 * 204.44033 * 9 7 2 11 11 C 1.37715 * 120.04024 * 180.02562 * 10 9 7 12 12 C 1.38367 * 120.41066 * 359.70304 * 11 10 9 13 13 C 1.39886 * 120.35782 * 0.55161 * 12 11 10 14 14 C 1.47888 * 120.02674 * 179.74117 * 13 12 11 15 15 O 1.21547 * 119.99718 * 179.72815 * 14 13 12 16 16 N 1.34772 * 119.99803 * 359.72869 * 14 13 12 17 17 S 1.65597 * 119.99917 * 179.97438 * 16 14 13 18 18 O 1.42108 * 106.40599 * 311.46437 * 17 16 14 19 19 O 1.42096 * 106.40584 * 178.54392 * 17 16 14 20 20 N 1.65606 * 107.21844 * 65.00239 * 17 16 14 21 21 C 1.46534 * 124.95427 * 89.99671 * 20 17 16 22 22 C 1.53752 * 105.18246 * 179.97438 * 21 20 17 23 23 C 1.51219 * 104.53804 * 359.97438 * 22 21 20 24 24 C 1.38165 * 130.98534 * 180.02562 * 23 22 21 25 25 C 1.38235 * 120.15257 * 179.97438 * 24 23 22 26 26 C 1.38297 * 119.82923 * 0.02562 * 25 24 23 27 27 C 1.37824 * 120.23778 * 359.97438 * 26 25 24 28 28 C 1.38595 * 108.53894 * 359.97438 * 23 22 21 29 29 C 1.39034 * 119.94931 * 359.47568 * 13 12 11 30 30 H 0.97000 * 120.00562 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.98365 * 0.02562 * 10 9 7 32 32 H 1.07997 * 119.79436 * 179.97438 * 11 10 9 33 33 H 1.08002 * 119.82670 * 180.27587 * 12 11 10 34 34 H 0.97001 * 120.00146 * 0.02562 * 16 14 13 35 35 H 1.08999 * 110.29976 * 61.05810 * 21 20 17 36 36 H 1.08998 * 110.30291 * 298.91323 * 21 20 17 37 37 H 1.09008 * 110.41859 * 241.23719 * 22 21 20 38 38 H 1.09000 * 110.42075 * 118.76522 * 22 21 20 39 39 H 1.07998 * 119.92478 * 359.97438 * 24 23 22 40 40 H 1.08004 * 120.08114 * 179.97438 * 25 24 23 41 41 H 1.08007 * 119.87823 * 180.02562 * 26 25 24 42 42 H 1.07998 * 119.86510 * 179.71987 * 27 26 25 43 43 H 1.07993 * 120.20659 * 180.22778 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2126 5 1 1.2771 2.7465 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0490 -1.2342 0.2877 9 6 1.3521 -2.4073 -0.3751 10 6 1.8264 -3.6498 0.0866 11 6 1.1860 -4.8122 -0.2813 12 6 0.0713 -4.7687 -1.0998 13 6 -0.4113 -3.5438 -1.5727 14 6 -1.5999 -3.5064 -2.4518 15 8 -2.0218 -2.4414 -2.8584 16 7 -2.2153 -4.6531 -2.8022 17 16 -3.5466 -4.6111 -3.7861 18 8 -4.4165 -3.6274 -3.2427 19 8 -3.9348 -5.9621 -3.9940 20 7 -3.0508 -4.0353 -5.2575 21 6 -2.5679 -4.8653 -6.3644 22 6 -2.2356 -3.8765 -7.4939 23 6 -2.5681 -2.5179 -6.9191 24 6 -2.4754 -1.2538 -7.4691 25 6 -2.8471 -0.1462 -6.7304 26 6 -3.3121 -0.3058 -5.4378 27 6 -3.4064 -1.5646 -4.8846 28 6 -3.0339 -2.6889 -5.6250 29 6 0.2240 -2.3612 -1.2110 30 1 -0.4851 0.8400 -0.0004 31 1 2.6931 -3.6916 0.7298 32 1 1.5535 -5.7632 0.0749 33 1 -0.4263 -5.6858 -1.3789 34 1 -1.8789 -5.5029 -2.4774 35 1 -3.3461 -5.5579 -6.6852 36 1 -1.6738 -5.4121 -6.0651 37 1 -2.8513 -4.0793 -8.3703 38 1 -1.1776 -3.9331 -7.7498 39 1 -2.1117 -1.1309 -8.4786 40 1 -2.7738 0.8415 -7.1614 41 1 -3.6032 0.5591 -4.8600 42 1 -3.7661 -1.6820 -3.8730 43 1 -0.1473 -1.4130 -1.5707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069777814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:08 Heat of formation + Delta-G solvation = -53.886109 kcal Electronic energy + Delta-G solvation = -31872.496099 eV Core-core repulsion = 27588.228381 eV Total energy + Delta-G solvation = -4284.267718 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 372.098 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.39958 -39.70668 -37.55658 -37.14119 -36.40291 -36.06148 -34.34528 -33.69489 -32.24812 -30.27198 -29.61716 -29.46948 -28.88855 -25.50204 -23.67873 -23.14533 -22.71654 -21.38301 -21.18134 -20.36939 -19.64719 -18.52720 -18.05604 -17.51768 -16.47453 -16.21872 -15.87704 -15.67171 -15.43890 -15.07057 -14.82983 -14.70334 -14.39862 -14.31899 -13.60234 -13.47023 -13.08709 -12.93197 -12.71747 -12.66253 -12.62087 -12.56666 -12.50596 -12.28159 -12.15090 -11.89836 -11.80768 -11.42091 -11.30305 -11.19913 -10.91207 -10.67377 -10.65451 -10.56353 -10.54418 -10.28049 -9.86608 -9.47199 -9.32656 -8.58352 -7.87405 -7.84563 -7.68388 -6.92647 -4.54338 0.18739 1.51427 1.60969 1.78441 2.48379 2.68569 3.00804 3.02449 3.06465 3.20473 3.46609 3.82849 3.95456 4.02058 4.20854 4.46713 4.58482 4.82132 4.91489 5.03447 5.12308 5.25908 5.32829 5.39146 5.43494 5.48992 5.64146 5.69012 5.78194 5.90139 5.97147 6.10457 6.21312 6.41001 6.51561 6.58669 6.69624 6.73516 6.83590 6.84542 6.96663 7.07250 7.19201 7.21575 7.52770 7.61048 7.79751 7.98701 8.14129 8.34099 8.66418 8.68017 10.02063 Molecular weight = 372.10amu Principal moments of inertia in cm(-1) A = 0.009573 B = 0.003765 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.096357 B = 7435.621932 C = 9223.896102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.456 4.456 8 H 0.083 0.917 9 C 0.098 3.902 10 C -0.207 4.207 11 C -0.094 4.094 12 C -0.219 4.219 13 C -0.133 4.133 14 C 0.582 3.418 15 O -0.491 6.491 16 N -1.062 6.062 17 S 2.783 3.217 18 O -0.937 6.937 19 O -0.962 6.962 20 N -0.939 5.939 21 C 0.114 3.886 22 C -0.079 4.079 23 C -0.136 4.136 24 C -0.090 4.090 25 C -0.141 4.141 26 C -0.093 4.093 27 C -0.109 4.109 28 C 0.157 3.843 29 C -0.084 4.084 30 H 0.288 0.712 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.431 0.569 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.154 0.846 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.848 -5.202 -12.823 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.485 4.485 8 H 0.101 0.899 9 C 0.095 3.905 10 C -0.227 4.227 11 C -0.112 4.112 12 C -0.239 4.239 13 C -0.138 4.138 14 C 0.375 3.625 15 O -0.364 6.364 16 N -0.830 5.830 17 S 2.792 3.208 18 O -0.920 6.920 19 O -0.946 6.946 20 N -0.766 5.766 21 C -0.010 4.010 22 C -0.117 4.117 23 C -0.140 4.140 24 C -0.108 4.108 25 C -0.160 4.160 26 C -0.111 4.111 27 C -0.130 4.130 28 C 0.061 3.939 29 C -0.104 4.104 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.269 0.731 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.172 0.828 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.290 -4.654 -12.730 14.550 hybrid contribution 0.960 0.148 0.314 1.021 sum -4.330 -4.506 -12.416 13.900 Atomic orbital electron populations 1.69758 1.07603 1.30215 1.32813 1.25984 0.94805 1.01674 0.92195 0.86298 0.80140 0.79919 0.80078 1.18637 1.20089 1.18872 1.19595 0.98309 0.90985 1.39585 0.89908 1.17592 0.91113 0.92573 0.89217 1.21145 1.03467 0.92673 1.05406 1.20442 0.95749 0.96936 0.98099 1.20323 1.01420 0.94461 1.07739 1.19287 0.96211 0.95828 1.02477 1.18917 0.83258 0.81506 0.78864 1.90886 1.64130 1.28316 1.53046 1.55313 1.48974 1.17368 1.61340 1.02339 0.73377 0.73109 0.71933 1.93657 1.61592 1.60625 1.76135 1.93652 1.80491 1.35157 1.85321 1.56334 1.77653 1.12637 1.30009 1.21934 0.99965 0.93453 0.85683 1.21031 1.02723 0.90447 0.97468 1.20032 1.04725 0.94811 0.94479 1.20259 1.00460 0.90497 0.99613 1.20996 1.01810 0.98219 0.95011 1.20890 0.98628 0.96552 0.95070 1.21223 1.00669 0.90036 1.01103 1.17944 0.98790 0.82725 0.94397 1.21699 0.96247 0.96258 0.96203 0.90117 0.88360 0.88580 0.89075 0.73092 0.89445 0.90073 0.89364 0.89312 0.86198 0.85958 0.85505 0.82827 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.69 10.96 55.55 0.61 -19.08 16 2 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 3 Si 0.91 17.98 29.59 -169.99 -5.03 12.95 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.46 -11.38 9.05 -37.73 -0.34 -11.73 16 8 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 9 C 0.10 2.44 5.57 -106.87 -0.60 1.85 16 10 C -0.21 -4.63 9.78 -38.81 -0.38 -5.01 16 11 C -0.09 -1.88 10.01 -39.72 -0.40 -2.27 16 12 C -0.22 -4.30 9.55 -38.92 -0.37 -4.67 16 13 C -0.13 -2.92 5.87 -105.03 -0.62 -3.54 16 14 C 0.58 11.73 7.68 -12.31 -0.09 11.64 16 15 O -0.49 -10.83 11.41 -11.73 -0.13 -10.97 16 16 N -1.06 -17.02 5.70 30.54 0.17 -16.85 16 17 S 2.78 44.77 5.88 -107.50 -0.63 44.14 16 18 O -0.94 -18.04 14.47 -64.60 -0.93 -18.97 16 19 O -0.96 -15.46 17.68 -57.17 -1.01 -16.47 16 20 N -0.94 -13.81 3.52 -58.12 -0.20 -14.01 16 21 C 0.11 1.23 7.18 -3.63 -0.03 1.20 16 22 C -0.08 -0.77 6.94 -27.24 -0.19 -0.96 16 23 C -0.14 -1.82 6.23 -104.26 -0.65 -2.47 16 24 C -0.09 -1.10 10.03 -39.61 -0.40 -1.50 16 25 C -0.14 -1.81 10.06 -39.56 -0.40 -2.21 16 26 C -0.09 -1.40 10.02 -39.71 -0.40 -1.80 16 27 C -0.11 -1.92 7.47 -39.19 -0.29 -2.21 16 28 C 0.16 2.53 6.13 -83.66 -0.51 2.02 16 29 C -0.08 -2.10 8.24 -38.44 -0.32 -2.41 16 30 H 0.29 6.70 8.30 -40.82 -0.34 6.36 16 31 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 32 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.09 1.44 6.38 -52.49 -0.33 1.10 16 34 H 0.43 5.62 6.84 -34.47 -0.24 5.39 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 41 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.15 3.05 4.80 -52.49 -0.25 2.80 16 43 H 0.14 3.67 5.74 -52.49 -0.30 3.37 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -30.92 368.30 -12.16 -43.08 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -4.48 Total: 13.04 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -6.07 Total: -22.40 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.58 Total: -49.94 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -2.08 Total: -46.41 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: 44.77 SS G_CDS: -0.63 Total: 44.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.92 -12.16 -43.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069777814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.809 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds