Wall clock time and date at job start Tue Mar 31 2020 05:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86805 * 119.99811 * 2 1 4 4 H 1.48494 * 109.47368 * 270.00875 * 3 2 1 5 5 H 1.48502 * 109.46897 * 30.00715 * 3 2 1 6 6 H 1.48504 * 109.47034 * 150.00413 * 3 2 1 7 7 C 1.39905 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00150 * 187.02797 * 7 2 1 9 9 C 1.41156 * 119.99954 * 7.03215 * 7 2 1 10 10 C 1.40866 * 120.16277 * 212.49412 * 9 7 2 11 11 C 1.36370 * 119.82703 * 180.02562 * 10 9 7 12 12 C 1.39477 * 120.17368 * 359.97438 * 11 10 9 13 13 N 1.39231 * 119.83861 * 180.02562 * 12 11 10 14 14 C 1.34772 * 120.00145 * 144.35825 * 13 12 11 15 15 O 1.21285 * 120.00349 * 5.36393 * 14 13 12 16 16 C 1.50707 * 120.00111 * 185.37337 * 14 13 12 17 17 H 1.08996 * 109.70064 * 356.57104 * 16 14 13 18 18 C 1.53184 * 109.58617 * 236.21262 * 16 14 13 19 19 C 1.53041 * 109.31486 * 185.57844 * 18 16 14 20 20 C 1.53037 * 109.53838 * 61.36161 * 19 18 16 21 21 C 1.53194 * 109.31693 * 298.63917 * 20 19 18 22 22 N 1.46930 * 109.58325 * 116.92007 * 16 14 13 23 23 C 1.34768 * 120.63416 * 353.67581 * 22 16 14 24 24 O 1.21286 * 120.00335 * 354.56413 * 23 22 16 25 25 C 1.50703 * 119.99855 * 174.57380 * 23 22 16 26 26 C 1.54272 * 110.03084 * 293.22080 * 25 23 22 27 27 C 1.54962 * 104.16073 * 217.13870 * 26 25 23 28 28 C 1.54893 * 102.77811 * 37.88868 * 27 26 25 29 29 C 1.53874 * 110.03180 * 176.00780 * 25 23 22 30 30 C 1.39485 * 120.32631 * 0.29597 * 12 11 10 31 31 C 1.36377 * 120.17054 * 359.44467 * 30 12 11 32 32 H 0.97000 * 120.00369 * 359.97438 * 1 2 3 33 33 H 1.08009 * 120.08580 * 0.04080 * 10 9 7 34 34 H 1.08008 * 119.91492 * 179.97438 * 11 10 9 35 35 H 0.96998 * 119.99719 * 324.35100 * 13 12 11 36 36 H 1.09003 * 109.49887 * 65.62586 * 18 16 14 37 37 H 1.09002 * 109.52358 * 305.54451 * 18 16 14 38 38 H 1.09005 * 109.45875 * 301.34577 * 19 18 16 39 39 H 1.08998 * 109.46396 * 181.38410 * 19 18 16 40 40 H 1.08995 * 109.50192 * 178.68713 * 20 19 18 41 41 H 1.08998 * 109.52681 * 58.60726 * 20 19 18 42 42 H 1.09002 * 109.58686 * 294.84970 * 21 20 19 43 43 H 1.09000 * 109.59212 * 174.42033 * 21 20 19 44 44 H 1.08996 * 110.02019 * 54.61842 * 25 23 22 45 45 H 1.09000 * 110.48267 * 335.78910 * 26 25 23 46 46 H 1.09002 * 110.48394 * 98.42773 * 26 25 23 47 47 H 1.08991 * 110.72039 * 279.57703 * 27 26 25 48 48 H 1.09001 * 110.92006 * 156.29137 * 27 26 25 49 49 H 1.09000 * 110.48559 * 203.40374 * 28 27 26 50 50 H 1.08998 * 110.59754 * 80.81800 * 28 27 26 51 51 H 1.08996 * 110.03400 * 238.56514 * 29 25 23 52 52 H 1.09002 * 110.03235 * 359.97438 * 29 25 23 53 53 H 1.08002 * 119.91255 * 179.72115 * 30 12 11 54 54 H 1.07998 * 120.08273 * 180.29673 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4900 2.0466 -1.4000 5 1 1.4401 2.6526 0.7002 6 1 3.5403 1.4402 0.7000 7 6 2.0083 -1.2116 -0.0005 8 1 3.0822 -1.2151 0.1139 9 6 1.3106 -2.4294 -0.1507 10 6 1.7777 -3.5959 0.4859 11 6 1.0985 -4.7689 0.3357 12 6 -0.0561 -4.8154 -0.4454 13 7 -0.7443 -6.0166 -0.5936 14 6 -2.0897 -6.0171 -0.6728 15 8 -2.6952 -4.9670 -0.7130 16 6 -2.8418 -7.3225 -0.7111 17 1 -2.1360 -8.1529 -0.7273 18 6 -3.7215 -7.3717 -1.9642 19 6 -4.5854 -8.6344 -1.9270 20 6 -5.4968 -8.5950 -0.6982 21 6 -4.6372 -8.5597 0.5693 22 7 -3.7020 -7.4303 0.4752 23 6 -3.6385 -6.5079 1.4556 24 8 -2.7992 -5.6333 1.4121 25 6 -4.6101 -6.5630 2.6062 26 6 -6.0394 -6.2693 2.1054 27 6 -6.6793 -5.4419 3.2487 28 6 -5.5055 -4.5501 3.7245 29 6 -4.2709 -5.4707 3.6355 30 6 -0.5215 -3.6657 -1.0835 31 6 0.1440 -2.4842 -0.9384 32 1 -0.4851 0.8400 0.0004 33 1 2.6712 -3.5613 1.0917 34 1 1.4556 -5.6643 0.8229 35 1 -0.2554 -6.8531 -0.6399 36 1 -3.0894 -7.3894 -2.8520 37 1 -4.3643 -6.4919 -1.9928 38 1 -3.9423 -9.5130 -1.8740 39 1 -5.1946 -8.6845 -2.8295 40 1 -6.1282 -9.4834 -0.6849 41 1 -6.1233 -7.7040 -0.7378 42 1 -4.0777 -9.4910 0.6575 43 1 -5.2778 -8.4318 1.4419 44 1 -4.5742 -7.5448 3.0783 45 1 -6.0088 -5.6872 1.1844 46 1 -6.5885 -7.1985 1.9525 47 1 -7.0194 -6.0940 4.0530 48 1 -7.5011 -4.8314 2.8745 49 1 -5.6658 -4.2250 4.7524 50 1 -5.3874 -3.6888 3.0670 51 1 -4.0711 -5.9223 4.6072 52 1 -3.4031 -4.9010 3.3030 53 1 -1.4138 -3.7103 -1.6904 54 1 -0.2203 -1.5939 -1.4292 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069918646.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:05 Heat of formation + Delta-G solvation = -72.625665 kcal Electronic energy + Delta-G solvation = -35322.500593 eV Core-core repulsion = 31029.478158 eV Total energy + Delta-G solvation = -4293.022435 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 370.204 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.21430 -40.60064 -39.23125 -38.36450 -37.79522 -36.07959 -34.66087 -33.97414 -32.67044 -31.42726 -30.72911 -30.12275 -29.60794 -27.38701 -26.27538 -24.76065 -23.42757 -23.13172 -22.56018 -21.77646 -21.24559 -21.03182 -19.62531 -19.22891 -18.78907 -18.09132 -17.68982 -17.17054 -16.93600 -16.36541 -16.11584 -16.02035 -15.77623 -15.45129 -15.39145 -14.90827 -14.83838 -14.66328 -14.51466 -14.39360 -14.21652 -13.95654 -13.86111 -13.76826 -13.38619 -13.35436 -12.84176 -12.67672 -12.64086 -12.50909 -12.32307 -12.28150 -12.16239 -12.08553 -11.92939 -11.75614 -11.73023 -11.67853 -11.62609 -11.59798 -11.39680 -11.18635 -10.62469 -10.54843 -10.28900 -9.65747 -9.45653 -8.74960 -8.53836 -6.30632 0.86343 1.10966 1.34760 1.42853 1.50386 1.56136 1.70072 2.21115 2.29507 2.38313 2.82901 3.41749 3.57143 3.64756 3.71022 3.76995 3.83826 3.86982 4.05610 4.12519 4.15877 4.24270 4.38272 4.39451 4.43804 4.46637 4.49833 4.53759 4.60379 4.66023 4.75929 4.82299 4.88575 4.94404 4.95495 5.01419 5.05219 5.10547 5.13248 5.17003 5.18776 5.19884 5.23591 5.31392 5.34589 5.41304 5.45923 5.47054 5.54847 5.68307 5.87340 6.09125 6.13326 6.35303 6.37426 6.68757 6.81038 6.94443 7.02028 7.22853 7.62580 8.42454 Molecular weight = 370.20amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.002815 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.301496 B = 9943.388932 C =11440.861081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.022 3.978 3 Si 0.992 3.008 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.500 4.500 8 H 0.081 0.919 9 C 0.069 3.931 10 C -0.213 4.213 11 C -0.113 4.113 12 C 0.043 3.957 13 N -0.651 5.651 14 C 0.518 3.482 15 O -0.566 6.566 16 C 0.136 3.864 17 H 0.118 0.882 18 C -0.120 4.120 19 C -0.109 4.109 20 C -0.135 4.135 21 C 0.099 3.901 22 N -0.602 5.602 23 C 0.492 3.508 24 O -0.548 6.548 25 C -0.099 4.099 26 C -0.106 4.106 27 C -0.113 4.113 28 C -0.129 4.129 29 C -0.124 4.124 30 C -0.107 4.107 31 C -0.166 4.166 32 H 0.282 0.718 33 H 0.110 0.890 34 H 0.127 0.873 35 H 0.411 0.589 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.052 0.948 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.133 0.867 45 H 0.037 0.963 46 H 0.113 0.887 47 H 0.100 0.900 48 H 0.071 0.929 49 H 0.080 0.920 50 H 0.030 0.970 51 H 0.088 0.912 52 H 0.037 0.963 53 H 0.090 0.910 54 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.473 -24.412 2.795 29.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.189 4.189 3 Si 0.812 3.188 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.531 4.531 8 H 0.099 0.901 9 C 0.067 3.933 10 C -0.233 4.233 11 C -0.133 4.133 12 C -0.051 4.051 13 N -0.296 5.296 14 C 0.307 3.693 15 O -0.444 6.444 16 C 0.029 3.971 17 H 0.136 0.864 18 C -0.159 4.159 19 C -0.147 4.147 20 C -0.173 4.173 21 C -0.021 4.021 22 N -0.338 5.338 23 C 0.282 3.718 24 O -0.425 6.425 25 C -0.120 4.120 26 C -0.143 4.143 27 C -0.150 4.150 28 C -0.166 4.166 29 C -0.162 4.162 30 C -0.127 4.127 31 C -0.187 4.187 32 H 0.092 0.908 33 H 0.128 0.872 34 H 0.145 0.855 35 H 0.247 0.753 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.130 0.870 41 H 0.071 0.929 42 H 0.116 0.884 43 H 0.127 0.873 44 H 0.151 0.849 45 H 0.056 0.944 46 H 0.131 0.869 47 H 0.118 0.882 48 H 0.090 0.910 49 H 0.099 0.901 50 H 0.049 0.951 51 H 0.106 0.894 52 H 0.056 0.944 53 H 0.108 0.892 54 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.689 -23.098 2.771 28.059 hybrid contribution 0.823 1.399 -0.226 1.638 sum -14.866 -21.699 2.545 26.426 Atomic orbital electron populations 1.69961 1.09203 1.29901 1.38592 1.26895 0.95588 1.04907 0.91548 0.85073 0.78831 0.75440 0.79463 1.18560 1.19712 1.17651 1.19756 0.95372 0.91241 1.46744 0.90126 1.17976 0.92283 0.93530 0.89556 1.20891 1.03419 0.93580 1.05377 1.20385 0.96160 0.98077 0.98652 1.17221 0.96603 0.86764 1.04537 1.42791 1.06198 1.07723 1.72922 1.20726 0.82194 0.91664 0.74704 1.90663 1.68353 1.35325 1.50016 1.21183 0.93316 0.94454 0.88152 0.86424 1.21847 0.98630 1.00404 0.95025 1.21511 0.98055 0.95864 0.99250 1.21976 0.97964 1.03695 0.93656 1.22276 0.91516 0.87866 1.00462 1.48121 1.40657 1.27228 1.17750 1.21545 0.85236 0.80268 0.84796 1.90884 1.38564 1.36574 1.76472 1.21971 0.94501 1.02551 0.92950 1.22412 0.92293 1.01733 0.97889 1.22506 0.96442 0.97893 0.98165 1.22366 0.95243 0.97633 1.01394 1.22164 0.98607 0.96642 0.98806 1.20543 0.98485 0.93376 1.00275 1.20899 0.99414 0.95909 1.02433 0.90816 0.87159 0.85477 0.75270 0.90072 0.93799 0.89189 0.90121 0.87024 0.92895 0.88374 0.87316 0.84894 0.94400 0.86890 0.88186 0.91019 0.90104 0.95132 0.89390 0.94411 0.89161 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -51.27 10.90 21.82 0.24 -51.04 16 2 C 0.02 1.24 5.29 85.24 0.45 1.69 16 3 Si 0.99 42.49 29.57 68.60 2.03 44.52 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.50 -29.59 9.03 23.39 0.21 -29.38 16 8 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 9 C 0.07 4.16 5.52 -21.28 -0.12 4.04 16 10 C -0.21 -11.39 9.74 22.48 0.22 -11.17 16 11 C -0.11 -5.43 9.90 22.13 0.22 -5.21 16 12 C 0.04 2.13 6.30 38.57 0.24 2.37 16 13 N -0.65 -25.56 5.30 -303.11 -1.61 -27.17 16 14 C 0.52 20.46 4.16 87.66 0.36 20.82 16 15 O -0.57 -29.15 12.09 20.45 0.25 -28.90 16 16 C 0.14 3.41 3.32 44.23 0.15 3.56 16 17 H 0.12 2.10 7.93 -2.39 -0.02 2.08 16 18 C -0.12 -2.54 5.31 30.67 0.16 -2.38 16 19 C -0.11 -1.21 5.88 30.62 0.18 -1.02 16 20 C -0.13 -1.22 6.08 30.67 0.19 -1.03 16 21 C 0.10 1.04 5.98 86.36 0.52 1.56 16 22 N -0.60 -13.68 2.97 -799.16 -2.38 -16.05 16 23 C 0.49 15.30 6.60 87.66 0.58 15.88 16 24 O -0.55 -24.91 11.00 20.45 0.22 -24.68 16 25 C -0.10 -2.14 2.37 -10.81 -0.03 -2.17 16 26 C -0.11 -1.86 5.49 31.70 0.17 -1.69 16 27 C -0.11 -1.86 6.91 31.91 0.22 -1.64 16 28 C -0.13 -3.13 6.83 31.67 0.22 -2.91 16 29 C -0.12 -3.36 6.40 31.32 0.20 -3.16 16 30 C -0.11 -6.15 8.62 22.14 0.19 -5.96 16 31 C -0.17 -10.32 8.58 22.48 0.19 -10.13 16 32 H 0.28 15.59 8.30 -92.71 -0.77 14.82 16 33 H 0.11 5.41 8.06 -2.91 -0.02 5.39 16 34 H 0.13 5.03 8.06 -2.91 -0.02 5.00 16 35 H 0.41 12.07 8.67 -92.71 -0.80 11.27 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.04 1.25 7.90 -2.39 -0.02 1.23 16 38 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.11 0.76 4.33 -2.39 -0.01 0.75 16 44 H 0.13 1.78 7.45 -2.39 -0.02 1.76 16 45 H 0.04 0.94 7.85 -2.39 -0.02 0.92 16 46 H 0.11 1.03 6.89 -2.39 -0.02 1.02 16 47 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 52 H 0.04 1.46 6.40 -2.39 -0.02 1.44 16 53 H 0.09 5.36 6.24 -2.91 -0.02 5.34 16 54 H 0.09 6.07 6.37 -2.91 -0.02 6.06 16 Total: -1.00 -92.16 413.30 3.40 -88.76 By element: Atomic # 1 Polarization: 42.38 SS G_CDS: 0.11 Total: 42.49 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 4.53 Total: -27.93 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -3.74 Total: -94.26 kcal Atomic # 8 Polarization: -54.06 SS G_CDS: 0.47 Total: -53.59 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -92.16 3.40 -88.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069918646.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.136 kcal (2) G-P(sol) polarization free energy of solvation -92.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds