Wall clock time and date at job start Tue Mar 31 2020 05:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48499 * 109.47323 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46909 * 300.00331 * 3 2 1 6 6 H 1.48496 * 109.46993 * 59.99849 * 3 2 1 7 7 C 1.39912 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00205 * 185.31384 * 7 2 1 9 9 C 1.41160 * 119.99497 * 5.31123 * 7 2 1 10 10 C 1.40865 * 120.15811 * 214.56746 * 9 7 2 11 11 C 1.36376 * 119.82660 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.16722 * 0.02562 * 11 10 9 13 13 N 1.39247 * 119.83355 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99876 * 26.24039 * 13 12 11 15 15 O 1.21276 * 119.99953 * 6.00249 * 14 13 12 16 16 C 1.50701 * 119.99650 * 186.00214 * 14 13 12 17 17 H 1.08997 * 109.70326 * 6.09063 * 16 14 13 18 18 C 1.53630 * 109.66241 * 126.68253 * 16 14 13 19 19 C 1.53040 * 109.24031 * 174.54673 * 18 16 14 20 20 C 1.53038 * 109.53849 * 298.51292 * 19 18 16 21 21 C 1.53197 * 109.31446 * 61.36640 * 20 19 18 22 22 N 1.46921 * 109.58680 * 245.73414 * 16 14 13 23 23 C 1.34775 * 120.63069 * 6.62992 * 22 16 14 24 24 O 1.21281 * 120.00167 * 355.54503 * 23 22 16 25 25 C 1.50706 * 120.00331 * 175.54710 * 23 22 16 26 26 C 1.54883 * 110.75905 * 179.97438 * 25 23 22 27 27 C 1.54262 * 104.31514 * 156.32532 * 26 25 23 28 28 C 1.53878 * 106.59728 * 336.32305 * 27 26 25 29 29 C 1.54265 * 106.59974 * 0.02562 * 28 27 26 30 30 C 1.39482 * 120.33491 * 0.25306 * 12 11 10 31 31 C 1.36375 * 120.16334 * 359.48383 * 30 12 11 32 32 H 0.96996 * 119.99503 * 359.97438 * 1 2 3 33 33 H 1.07996 * 120.08959 * 0.04898 * 10 9 7 34 34 H 1.08001 * 119.92015 * 179.97438 * 11 10 9 35 35 H 0.96999 * 119.99666 * 206.24235 * 13 12 11 36 36 H 1.09001 * 109.63167 * 54.55952 * 18 16 14 37 37 H 1.08991 * 109.45788 * 294.43434 * 18 16 14 38 38 H 1.08995 * 109.45846 * 178.49156 * 19 18 16 39 39 H 1.09000 * 109.45604 * 58.53321 * 19 18 16 40 40 H 1.09003 * 109.49565 * 301.41143 * 20 19 18 41 41 H 1.09004 * 109.49594 * 181.31854 * 20 19 18 42 42 H 1.08995 * 109.58633 * 185.57506 * 21 20 19 43 43 H 1.09000 * 109.58453 * 65.15156 * 21 20 19 44 44 H 1.09002 * 110.81045 * 56.66350 * 25 23 22 45 45 H 1.08997 * 110.48650 * 37.57675 * 26 25 23 46 46 H 1.09006 * 110.48933 * 275.06947 * 26 25 23 47 47 H 1.09004 * 110.03324 * 95.60651 * 27 26 25 48 48 H 1.09004 * 110.03600 * 216.99297 * 27 26 25 49 49 H 1.09002 * 110.03265 * 119.28284 * 28 27 26 50 50 H 1.08997 * 110.03682 * 240.66413 * 28 27 26 51 51 H 1.09000 * 110.49278 * 142.28503 * 29 28 27 52 52 H 1.09005 * 110.48578 * 264.80300 * 29 28 27 53 53 H 1.08000 * 119.91640 * 179.74717 * 30 12 11 54 54 H 1.08004 * 120.08188 * 180.25881 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 -0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0083 -1.2117 -0.0005 8 1 3.0848 -1.2137 0.0861 9 6 1.3070 -2.4314 -0.1143 10 6 1.7667 -3.5778 0.5630 11 6 1.0842 -4.7529 0.4480 12 6 -0.0660 -4.8214 -0.3382 13 7 -0.7571 -6.0249 -0.4512 14 6 -0.6820 -6.9404 0.5351 15 8 -0.1030 -6.6739 1.5669 16 6 -1.3174 -8.2950 0.3557 17 1 -1.6935 -8.3926 -0.6626 18 6 -0.2797 -9.3935 0.6331 19 6 -0.9663 -10.7603 0.5820 20 6 -2.0446 -10.8322 1.6655 21 6 -3.0986 -9.7516 1.4039 22 7 -2.4262 -8.4488 1.3072 23 6 -2.8229 -7.4129 2.0727 24 8 -2.2125 -6.3655 2.0392 25 6 -4.0248 -7.5561 2.9705 26 6 -4.2875 -6.2436 3.7498 27 6 -5.7865 -6.3065 4.1086 28 6 -6.4451 -7.2449 3.0822 29 6 -5.3232 -7.7200 2.1359 30 6 -0.5240 -3.6919 -1.0164 31 6 0.1450 -2.5086 -0.9067 32 1 -0.4849 0.8401 0.0004 33 1 2.6570 -3.5263 1.1720 34 1 1.4355 -5.6329 0.9662 35 1 -1.2927 -6.2044 -1.2398 36 1 0.1581 -9.2430 1.6198 37 1 0.5042 -9.3516 -0.1230 38 1 -0.2281 -11.5440 0.7518 39 1 -1.4251 -10.8998 -0.3968 40 1 -1.5901 -10.6681 2.6426 41 1 -2.5172 -11.8142 1.6439 42 1 -3.8147 -9.7332 2.2254 43 1 -3.6171 -9.9656 0.4693 44 1 -3.8981 -8.3936 3.6566 45 1 -4.0820 -5.3783 3.1197 46 1 -3.6799 -6.2087 4.6541 47 1 -5.9131 -6.7060 5.1148 48 1 -6.2281 -5.3121 4.0435 49 1 -6.8914 -8.0998 3.5904 50 1 -7.2071 -6.7063 2.5189 51 1 -5.4716 -8.7647 1.8624 52 1 -5.2861 -7.0946 1.2440 53 1 -1.4130 -3.7536 -1.6266 54 1 -0.2132 -1.6338 -1.4291 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069918647.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:08 Heat of formation + Delta-G solvation = -71.632238 kcal Electronic energy + Delta-G solvation = -34930.519311 eV Core-core repulsion = 30637.539954 eV Total energy + Delta-G solvation = -4292.979357 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 370.204 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.19090 -40.60507 -39.21745 -38.36457 -37.84632 -36.05744 -34.68258 -33.97116 -32.63113 -31.49912 -30.67803 -30.10873 -29.60751 -27.38299 -26.28115 -24.76666 -23.62067 -23.19692 -22.54843 -21.43833 -21.24659 -20.97623 -19.85575 -19.30398 -18.70676 -18.04914 -17.45875 -17.12545 -16.97767 -16.78074 -16.09355 -15.90008 -15.73527 -15.50488 -15.29850 -14.87015 -14.83097 -14.68595 -14.40658 -14.37353 -14.14619 -14.00552 -13.88812 -13.77092 -13.41476 -13.29782 -13.05777 -12.83662 -12.74170 -12.57220 -12.43666 -12.21017 -12.10216 -12.05360 -11.96756 -11.77705 -11.73931 -11.68610 -11.57736 -11.39201 -11.24493 -11.24019 -10.77638 -10.54862 -10.26173 -9.67103 -9.48706 -8.67239 -8.51516 -6.30122 0.81700 1.10047 1.36537 1.40944 1.52637 1.61323 1.63737 2.22756 2.31499 2.34029 2.82637 3.39058 3.53165 3.62901 3.70149 3.78167 3.83755 3.87108 4.04958 4.11771 4.17126 4.22687 4.34298 4.40403 4.43554 4.51791 4.52388 4.53024 4.58309 4.66689 4.77774 4.81653 4.87527 4.88624 4.91136 5.06042 5.07344 5.09374 5.13631 5.14756 5.17501 5.22463 5.26432 5.32185 5.33247 5.44979 5.45777 5.46571 5.51246 5.66140 5.86316 6.02750 6.12366 6.35369 6.39163 6.65345 6.80777 6.95439 7.00067 7.20808 7.59775 8.43922 Molecular weight = 370.20amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.002616 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.527716 B =10701.997296 C =12554.047618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.027 3.973 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.270 1.270 7 C -0.503 4.503 8 H 0.072 0.928 9 C 0.067 3.933 10 C -0.219 4.219 11 C -0.106 4.106 12 C 0.047 3.953 13 N -0.650 5.650 14 C 0.517 3.483 15 O -0.557 6.557 16 C 0.134 3.866 17 H 0.119 0.881 18 C -0.119 4.119 19 C -0.110 4.110 20 C -0.135 4.135 21 C 0.101 3.899 22 N -0.601 5.601 23 C 0.494 3.506 24 O -0.550 6.550 25 C -0.102 4.102 26 C -0.114 4.114 27 C -0.121 4.121 28 C -0.117 4.117 29 C -0.104 4.104 30 C -0.131 4.131 31 C -0.149 4.149 32 H 0.284 0.716 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.410 0.590 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.125 0.875 45 H 0.037 0.963 46 H 0.053 0.947 47 H 0.080 0.920 48 H 0.058 0.942 49 H 0.093 0.907 50 H 0.069 0.931 51 H 0.109 0.891 52 H 0.051 0.949 53 H 0.120 0.880 54 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.755 -25.713 0.452 30.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.185 1.185 6 H -0.195 1.195 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.065 3.935 10 C -0.240 4.240 11 C -0.126 4.126 12 C -0.047 4.047 13 N -0.295 5.295 14 C 0.307 3.693 15 O -0.435 6.435 16 C 0.027 3.973 17 H 0.137 0.863 18 C -0.158 4.158 19 C -0.147 4.147 20 C -0.173 4.173 21 C -0.020 4.020 22 N -0.337 5.337 23 C 0.283 3.717 24 O -0.427 6.427 25 C -0.123 4.123 26 C -0.152 4.152 27 C -0.159 4.159 28 C -0.155 4.155 29 C -0.142 4.142 30 C -0.151 4.151 31 C -0.169 4.169 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.246 0.754 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.119 0.881 44 H 0.142 0.858 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.111 0.889 50 H 0.088 0.912 51 H 0.127 0.873 52 H 0.070 0.930 53 H 0.137 0.863 54 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.238 -24.884 1.179 29.202 hybrid contribution 0.701 1.504 0.019 1.660 sum -14.537 -23.379 1.199 27.556 Atomic orbital electron populations 1.69884 1.08779 1.29959 1.38881 1.26766 0.95742 1.04399 0.91545 0.85053 0.79067 0.75994 0.78845 1.18282 1.18486 1.19457 1.19703 0.94858 0.91323 1.47552 0.91002 1.17959 0.93095 0.92851 0.89631 1.20914 1.03184 0.94705 1.05153 1.20510 0.94762 0.97587 0.99736 1.17305 0.94881 0.86576 1.05984 1.42898 1.49245 1.15430 1.21919 1.20663 0.80065 0.86532 0.82085 1.90618 1.45650 1.79450 1.27763 1.21325 0.89166 0.91438 0.95361 0.86344 1.21901 0.96913 0.94784 1.02159 1.21516 0.98442 0.94116 1.00666 1.21982 0.96682 0.99984 0.98685 1.22275 0.95238 0.79532 1.04913 1.48165 1.33033 1.12874 1.39605 1.21497 0.85984 0.83350 0.80849 1.90946 1.55435 1.30327 1.66026 1.22348 0.92394 1.00537 0.97016 1.22211 0.97712 0.96324 0.98957 1.22145 0.92818 1.00436 1.00469 1.22126 0.97198 0.99692 0.96440 1.22474 0.91077 1.03401 0.97230 1.20439 0.99926 0.91875 1.02849 1.20867 0.98778 0.96041 1.01256 0.90558 0.88930 0.87501 0.75421 0.93564 0.90235 0.90143 0.89182 0.93133 0.87056 0.87410 0.88110 0.85760 0.94442 0.92840 0.90105 0.92305 0.88868 0.91191 0.87281 0.93009 0.86254 0.87418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.45 10.97 21.82 0.24 -48.21 16 2 C 0.03 1.48 5.31 85.24 0.45 1.93 16 3 Si 0.99 41.82 29.56 68.60 2.03 43.85 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.50 -29.85 9.02 23.39 0.21 -29.64 16 8 H 0.07 4.12 7.85 -2.91 -0.02 4.10 16 9 C 0.07 4.04 5.50 -21.28 -0.12 3.92 16 10 C -0.22 -12.75 9.74 22.48 0.22 -12.53 16 11 C -0.11 -5.79 8.62 22.14 0.19 -5.60 16 12 C 0.05 2.32 6.42 38.56 0.25 2.57 16 13 N -0.65 -25.42 5.33 -303.11 -1.62 -27.04 16 14 C 0.52 19.87 4.18 87.66 0.37 20.24 16 15 O -0.56 -27.53 11.73 20.74 0.24 -27.29 16 16 C 0.13 3.26 3.33 44.38 0.15 3.41 16 17 H 0.12 2.04 7.96 -2.39 -0.02 2.02 16 18 C -0.12 -2.45 5.31 30.82 0.16 -2.29 16 19 C -0.11 -1.18 5.88 30.62 0.18 -1.00 16 20 C -0.14 -1.18 6.08 30.67 0.19 -0.99 16 21 C 0.10 0.98 5.55 86.36 0.48 1.46 16 22 N -0.60 -12.99 2.97 -798.37 -2.37 -15.35 16 23 C 0.49 14.65 6.93 87.66 0.61 15.26 16 24 O -0.55 -24.24 11.25 20.73 0.23 -24.01 16 25 C -0.10 -2.09 2.27 -10.13 -0.02 -2.11 16 26 C -0.11 -2.96 5.89 31.67 0.19 -2.77 16 27 C -0.12 -2.11 6.80 31.32 0.21 -1.90 16 28 C -0.12 -1.42 6.80 31.32 0.21 -1.21 16 29 C -0.10 -1.42 5.67 31.78 0.18 -1.24 16 30 C -0.13 -6.59 9.87 22.13 0.22 -6.37 16 31 C -0.15 -8.54 8.57 22.48 0.19 -8.35 16 32 H 0.28 14.70 8.30 -92.71 -0.77 13.93 16 33 H 0.09 5.19 8.06 -2.91 -0.02 5.17 16 34 H 0.11 5.86 5.88 -2.91 -0.02 5.84 16 35 H 0.41 12.37 8.65 -92.71 -0.80 11.57 16 36 H 0.05 1.28 7.88 -2.39 -0.02 1.26 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 39 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 42 H 0.11 0.67 4.84 -2.39 -0.01 0.66 16 43 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.12 1.86 7.38 -2.39 -0.02 1.85 16 45 H 0.04 1.29 7.44 -2.39 -0.02 1.27 16 46 H 0.05 1.48 8.14 -2.38 -0.02 1.47 16 47 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 49 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.11 0.68 6.69 -2.39 -0.02 0.67 16 52 H 0.05 0.93 8.05 -2.38 -0.02 0.91 16 53 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16 54 H 0.11 6.31 6.48 -2.91 -0.02 6.29 16 Total: -1.00 -88.55 413.94 3.39 -85.17 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: 0.11 Total: 40.10 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: 4.52 Total: -27.23 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -3.74 Total: -90.60 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: 0.48 Total: -51.29 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -88.55 3.39 -85.17 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069918647.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.534 kcal (2) G-P(sol) polarization free energy of solvation -88.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds