Wall clock time and date at job start Tue Mar 31 2020 05:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00319 * 2 1 4 4 C 1.46903 * 110.99716 * 123.95946 * 2 1 3 5 5 C 1.53002 * 109.47224 * 66.04386 * 4 2 1 6 6 C 1.52999 * 109.46615 * 179.97438 * 5 4 2 7 7 N 1.46502 * 109.46726 * 179.97438 * 6 5 4 8 8 C 1.46507 * 120.00136 * 274.99797 * 7 6 5 9 9 C 1.50693 * 109.47193 * 275.00474 * 8 7 6 10 10 H 1.08000 * 120.00303 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00114 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99794 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00431 * 179.97438 * 11 9 8 14 14 H 1.48510 * 109.46958 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47115 * 120.00026 * 13 11 9 16 16 H 1.48493 * 109.47448 * 240.00403 * 13 11 9 17 17 S 1.65593 * 120.00071 * 95.00295 * 7 6 5 18 18 O 1.42100 * 106.40243 * 336.46058 * 17 7 6 19 19 O 1.42100 * 106.40382 * 203.54030 * 17 7 6 20 20 C 1.76199 * 107.22096 * 89.99850 * 17 7 6 21 21 C 1.38238 * 119.99918 * 89.99922 * 20 17 7 22 22 C 1.38234 * 119.99693 * 179.97438 * 21 20 17 23 23 C 1.38234 * 120.00240 * 0.02562 * 22 21 20 24 24 N 1.48026 * 119.99930 * 179.97438 * 23 22 21 25 25 O 1.21793 * 119.99867 * 0.02562 * 24 23 22 26 26 O 1.21799 * 119.99956 * 179.97438 * 24 23 22 27 27 C 1.38233 * 120.00037 * 0.26327 * 23 22 21 28 28 C 1.38234 * 120.00034 * 270.02265 * 20 17 7 29 29 H 1.09004 * 109.46702 * 296.04582 * 1 2 3 30 30 H 1.09001 * 109.47299 * 56.03985 * 1 2 3 31 31 H 1.09001 * 109.47722 * 176.04405 * 1 2 3 32 32 H 1.09002 * 109.46797 * 183.95529 * 3 2 1 33 33 H 1.08997 * 109.46911 * 303.95803 * 3 2 1 34 34 H 1.08999 * 109.46545 * 63.95734 * 3 2 1 35 35 H 1.08996 * 109.46962 * 306.03989 * 4 2 1 36 36 H 1.09003 * 109.46603 * 186.04554 * 4 2 1 37 37 H 1.08997 * 109.46972 * 60.00068 * 5 4 2 38 38 H 1.09001 * 109.46770 * 299.99411 * 5 4 2 39 39 H 1.09006 * 109.47046 * 60.00439 * 6 5 4 40 40 H 1.08996 * 109.47386 * 299.99839 * 6 5 4 41 41 H 1.09002 * 109.46861 * 34.99920 * 8 7 6 42 42 H 1.08997 * 109.46981 * 154.99700 * 8 7 6 43 43 H 0.97001 * 120.00019 * 180.02562 * 12 11 9 44 44 H 1.07991 * 120.00287 * 0.02562 * 21 20 17 45 45 H 1.08004 * 120.00214 * 179.97438 * 22 21 20 46 46 H 1.08004 * 119.99939 * 179.72815 * 27 23 22 47 47 H 1.07999 * 119.99990 * 359.97438 * 28 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.6313 -2.2427 0.9702 6 6 2.1802 -3.0406 2.1547 7 7 1.8311 -4.4544 1.9948 8 6 0.5272 -4.9431 2.4505 9 6 0.6007 -5.2763 3.9183 10 1 1.5260 -5.1383 4.4577 11 6 -0.5136 -5.7574 4.5726 12 7 -1.6403 -5.9259 3.9156 13 14 -0.4225 -6.1711 6.3919 14 1 0.9476 -5.8951 6.8942 15 1 -1.3999 -5.3388 7.1383 16 1 -0.7426 -7.6076 6.5895 17 16 2.9102 -5.5002 1.2991 18 8 3.7742 -4.7090 0.4949 19 8 2.1461 -6.5829 0.7861 20 6 3.9041 -6.1624 2.5945 21 6 3.5141 -7.3197 3.2423 22 6 4.2942 -7.8395 4.2582 23 6 5.4639 -7.2017 4.6269 24 7 6.2989 -7.7580 5.7152 25 8 5.9555 -8.7779 6.2855 26 8 7.3298 -7.1964 6.0397 27 6 5.8508 -6.0412 3.9832 28 6 5.0736 -5.5244 2.9635 29 1 -0.3633 0.4513 0.9234 30 1 -0.3634 0.5741 -0.8524 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0829 1.3431 -0.0709 33 1 1.5898 1.9163 -0.8524 34 1 1.7045 1.8722 0.9233 35 1 1.5611 -0.3874 2.0627 36 1 3.0797 -0.6612 1.1756 37 1 2.0657 -2.6214 0.0450 38 1 0.5470 -2.3475 0.9322 39 1 1.7461 -2.6620 3.0802 40 1 3.2644 -2.9357 2.1923 41 1 -0.2261 -4.1717 2.2903 42 1 0.2574 -5.8369 1.8879 43 1 -2.4243 -6.2639 4.3760 44 1 2.6005 -7.8182 2.9540 45 1 3.9894 -8.7434 4.7646 46 1 6.7625 -5.5405 4.2742 47 1 5.3782 -4.6202 2.4574 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070014654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:06 Heat of formation + Delta-G solvation = -41.903239 kcal Electronic energy + Delta-G solvation = -32452.453697 eV Core-core repulsion = 27959.115338 eV Total energy + Delta-G solvation = -4493.338360 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 371.139 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.30302 -39.41491 -37.90589 -37.01310 -36.69045 -36.10141 -35.57161 -33.00339 -32.32896 -31.56666 -31.28221 -27.68110 -27.47183 -26.88774 -25.54334 -23.39544 -23.12362 -22.79619 -22.00935 -20.69695 -19.50201 -18.99179 -18.78872 -17.66234 -17.61469 -17.13950 -16.54570 -16.10649 -15.58964 -15.46931 -15.15944 -15.04617 -14.76352 -14.60474 -14.06318 -14.02033 -13.90177 -13.55983 -13.46315 -12.95764 -12.50023 -12.41853 -12.14195 -12.02836 -11.90850 -11.79111 -11.71496 -11.68288 -11.64392 -11.53316 -11.40793 -11.30111 -11.24972 -11.09455 -11.04692 -10.91443 -10.65994 -10.42604 -10.22294 -10.01842 -9.95953 -9.51457 -8.67603 -8.39772 -8.32728 -6.29613 -4.37707 -0.49705 0.64252 0.81524 1.08080 1.24508 2.89833 3.11683 3.21995 3.22236 3.35001 3.88067 4.02917 4.12183 4.20849 4.30793 4.43152 4.83420 4.95870 5.00012 5.04692 5.07346 5.10030 5.11893 5.30669 5.32525 5.37773 5.49157 5.51465 5.53375 5.55623 5.59666 5.73781 5.75391 5.77915 5.89671 5.98150 6.05392 6.07659 6.33068 6.46115 6.52064 6.98295 7.00982 7.10025 7.18942 7.37429 7.51483 7.65871 7.92896 8.67183 9.30202 10.78046 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.007787 B = 0.003553 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3594.992257 B = 7879.619481 C = 9802.901860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.058 3.942 5 C -0.137 4.137 6 C 0.132 3.868 7 N -0.973 5.973 8 C 0.242 3.758 9 C -0.548 4.548 10 H 0.061 0.939 11 C 0.070 3.930 12 N -0.884 5.884 13 Si 0.888 3.112 14 H -0.274 1.274 15 H -0.281 1.281 16 H -0.280 1.280 17 S 2.684 3.316 18 O -0.962 6.962 19 O -0.945 6.945 20 C -0.624 4.624 21 C 0.004 3.996 22 C -0.077 4.077 23 C -0.002 4.002 24 N 0.024 4.976 25 O -0.153 6.153 26 O -0.157 6.157 27 C -0.083 4.083 28 C -0.024 4.024 29 H 0.025 0.975 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.266 0.734 44 H 0.169 0.831 45 H 0.161 0.839 46 H 0.158 0.842 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.137 6.955 -3.968 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.071 4.071 5 C -0.177 4.177 6 C 0.005 3.995 7 N -0.813 5.813 8 C 0.121 3.879 9 C -0.588 4.588 10 H 0.079 0.921 11 C -0.134 4.134 12 N -0.521 5.521 13 Si 0.715 3.285 14 H -0.199 1.199 15 H -0.207 1.207 16 H -0.205 1.205 17 S 2.770 3.230 18 O -0.953 6.953 19 O -0.935 6.935 20 C -0.706 4.706 21 C -0.016 4.016 22 C -0.096 4.096 23 C -0.085 4.085 24 N 0.545 4.455 25 O -0.371 6.371 26 O -0.374 6.374 27 C -0.103 4.103 28 C -0.044 4.044 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.187 0.813 45 H 0.178 0.822 46 H 0.176 0.824 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.775 6.713 -5.745 12.453 hybrid contribution 0.058 -0.066 3.091 3.092 sum 8.833 6.647 -2.655 11.369 Atomic orbital electron populations 1.22458 0.87282 1.02922 1.00158 1.61966 1.08204 1.13431 1.43625 1.22367 1.00705 0.89043 1.00224 1.22082 1.00068 0.93829 0.91098 1.22056 1.02515 0.93381 0.99725 1.21079 0.99044 0.80381 0.98958 1.57390 1.28936 1.16687 1.78241 1.19347 0.77289 0.96451 0.94855 1.21528 0.97452 1.45075 0.94709 0.92124 1.24899 0.95206 0.95077 0.98221 1.69921 1.01281 1.44571 1.36347 0.86612 0.78275 0.78506 0.85119 1.19870 1.20681 1.20540 1.02453 0.72996 0.73689 0.73882 1.93560 1.67519 1.69414 1.64764 1.93591 1.69102 1.54337 1.76457 1.32065 1.10735 1.06233 1.21533 1.21119 0.98025 0.92113 0.90320 1.21235 0.91255 1.00634 0.96515 1.21398 0.95060 0.98727 0.93305 1.43702 1.00736 1.00127 1.00944 1.94551 1.75974 1.12781 1.53759 1.94524 1.12819 1.61394 1.68647 1.21091 1.01196 0.93219 0.94797 1.20956 0.91268 0.98674 0.93495 0.95622 0.91730 0.90585 0.91432 0.91599 0.95851 0.94552 0.90694 0.90550 0.90881 0.89736 0.91477 0.93578 0.92645 0.92387 0.81326 0.82188 0.82432 0.82242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.32 60.06 0.56 0.78 16 2 N -0.55 -6.47 5.02 -251.25 -1.26 -7.73 16 3 C 0.03 0.23 9.57 60.06 0.57 0.81 16 4 C 0.06 0.68 4.96 -3.82 -0.02 0.67 16 5 C -0.14 -1.90 5.46 -26.73 -0.15 -2.05 16 6 C 0.13 1.93 5.34 -4.04 -0.02 1.91 16 7 N -0.97 -17.09 2.77 -115.66 -0.32 -17.41 16 8 C 0.24 5.26 5.43 -5.19 -0.03 5.23 16 9 C -0.55 -12.93 9.38 -34.44 -0.32 -13.26 16 10 H 0.06 1.40 7.81 -52.49 -0.41 0.99 16 11 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.88 -23.41 13.29 55.43 0.74 -22.67 16 13 Si 0.89 19.65 29.54 -169.99 -5.02 14.63 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 S 2.68 45.51 5.65 -107.50 -0.61 44.91 16 18 O -0.96 -16.30 16.25 -57.17 -0.93 -17.23 16 19 O -0.94 -18.76 15.84 -57.17 -0.91 -19.66 16 20 C -0.62 -9.38 5.97 -39.58 -0.24 -9.62 16 21 C 0.00 0.06 9.52 -39.58 -0.38 -0.32 16 22 C -0.08 -1.08 9.56 -39.58 -0.38 -1.46 16 23 C 0.00 -0.04 6.85 -79.95 -0.55 -0.58 16 24 N 0.02 0.37 4.45 33.96 0.15 0.52 16 25 O -0.15 -2.41 18.45 -29.46 -0.54 -2.95 16 26 O -0.16 -2.37 18.45 -29.46 -0.54 -2.91 16 27 C -0.08 -1.03 9.56 -39.58 -0.38 -1.41 16 28 C -0.02 -0.31 9.52 -39.58 -0.38 -0.68 16 29 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 31 H 0.08 0.90 6.47 -51.93 -0.34 0.56 16 32 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 33 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 36 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.07 6.55 -51.93 -0.34 0.73 16 39 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 40 H 0.07 0.82 7.61 -51.93 -0.40 0.43 16 41 H 0.05 1.05 8.11 -51.93 -0.42 0.63 16 42 H 0.06 1.32 6.91 -51.93 -0.36 0.96 16 43 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 44 H 0.17 2.54 7.62 -52.49 -0.40 2.14 16 45 H 0.16 1.97 7.61 -52.48 -0.40 1.57 16 46 H 0.16 1.54 7.61 -52.48 -0.40 1.15 16 47 H 0.16 1.60 7.62 -52.49 -0.40 1.20 16 LS Contribution 412.25 15.07 6.21 6.21 Total: -1.00 -29.51 412.25 -11.61 -41.12 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.79 Total: 1.52 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.79 Total: -18.32 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.69 Total: -47.30 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -2.92 Total: -42.76 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: 45.51 SS G_CDS: -0.61 Total: 44.91 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -29.51 -11.61 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070014654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.783 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds