Wall clock time and date at job start Tue Mar 31 2020 05:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99698 * 2 1 4 4 H 1.48496 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47171 * 299.99861 * 3 2 1 6 6 H 1.48501 * 109.47401 * 59.99743 * 3 2 1 7 7 C 1.37876 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99332 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00125 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46713 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99964 * 90.00263 * 10 9 7 12 12 O 1.21293 * 120.00063 * 174.66382 * 11 10 9 13 13 C 1.50699 * 120.00197 * 354.94027 * 11 10 9 14 14 N 1.46495 * 109.47187 * 179.72521 * 13 11 10 15 15 C 1.34952 * 126.03754 * 124.71951 * 14 13 11 16 16 C 1.35308 * 107.74698 * 179.83765 * 15 14 13 17 17 C 1.39875 * 107.92064 * 0.42051 * 16 15 14 18 18 C 1.50699 * 125.89951 * 179.72092 * 17 16 15 19 19 F 1.39894 * 109.47112 * 184.99890 * 18 17 16 20 20 F 1.39905 * 109.47024 * 304.99446 * 18 17 16 21 21 F 1.39899 * 109.47367 * 64.99728 * 18 17 16 22 22 N 1.30836 * 108.19890 * 359.73827 * 17 16 15 23 23 C 1.40034 * 120.00283 * 269.99503 * 10 9 7 24 24 C 1.38854 * 120.04007 * 112.54672 * 23 10 9 25 25 C 1.38119 * 119.95004 * 179.77381 * 24 23 10 26 26 C 1.38470 * 120.04585 * 0.50763 * 25 24 23 27 27 F 1.35093 * 119.95842 * 179.72563 * 26 25 24 28 28 C 1.38484 * 120.08832 * 359.74806 * 26 25 24 29 29 C 1.38105 * 120.04616 * 359.97438 * 28 26 25 30 30 H 0.97006 * 120.00282 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.46943 * 60.00169 * 9 7 2 32 32 H 1.09000 * 109.47165 * 300.00211 * 9 7 2 33 33 H 1.09002 * 109.46880 * 299.72715 * 13 11 10 34 34 H 1.09000 * 109.47222 * 59.72098 * 13 11 10 35 35 H 1.08003 * 126.12329 * 359.97438 * 15 14 13 36 36 H 1.08000 * 126.04285 * 180.15836 * 16 15 14 37 37 H 1.07992 * 120.02247 * 0.02691 * 24 23 10 38 38 H 1.08001 * 119.97559 * 180.23574 * 25 24 23 39 39 H 1.08002 * 119.97423 * 179.97438 * 28 26 25 40 40 H 1.08001 * 120.02340 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2031 -3.6125 0.0015 11 6 2.6419 -4.1242 1.1686 12 8 3.3534 -5.1066 1.1707 13 6 2.2436 -3.4796 2.4712 14 7 2.8392 -4.2212 3.5853 15 6 3.6242 -3.7043 4.5537 16 6 3.9637 -4.7115 5.3909 17 6 3.3737 -5.8861 4.9127 18 6 3.4943 -7.2528 5.5361 19 9 2.8645 -8.1961 4.7171 20 9 4.8463 -7.5844 5.6749 21 9 2.8839 -7.2466 6.7949 22 7 2.6994 -5.5933 3.8304 23 6 2.6572 -4.1454 -1.2114 24 6 3.9859 -3.9916 -1.5840 25 6 4.4328 -4.5219 -2.7785 26 6 3.5545 -5.1974 -3.6090 27 9 3.9923 -5.7106 -4.7794 28 6 2.2277 -5.3472 -3.2415 29 6 1.7781 -4.8234 -2.0453 30 1 -0.4851 0.8401 0.0004 31 1 0.6241 -2.5575 -0.8880 32 1 0.6247 -2.5563 0.8919 33 1 2.5981 -2.4490 2.4898 34 1 1.1577 -3.4920 2.5656 35 1 3.9254 -2.6711 4.6453 36 1 4.5845 -4.6248 6.2704 37 1 4.6702 -3.4613 -0.9385 38 1 5.4671 -4.4058 -3.0670 39 1 1.5442 -5.8740 -3.8908 40 1 0.7432 -4.9401 -1.7593 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071893404.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:07 Heat of formation + Delta-G solvation = -110.815610 kcal Electronic energy + Delta-G solvation = -33125.167587 eV Core-core repulsion = 27828.079966 eV Total energy + Delta-G solvation = -5297.087621 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 371.100 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.13038 -48.71300 -47.67325 -47.60986 -41.45925 -40.04507 -38.04111 -35.27167 -33.66720 -32.86390 -30.97225 -30.53664 -29.76325 -28.35096 -27.26226 -25.59878 -23.52092 -22.71661 -22.50504 -21.42796 -21.02386 -19.31941 -18.53315 -18.23880 -17.95593 -17.55115 -17.12489 -16.98918 -16.50014 -16.08746 -15.99725 -15.39697 -15.09139 -14.62995 -14.54513 -14.48376 -14.37187 -14.19744 -14.06282 -13.79171 -13.76969 -13.73544 -13.55501 -13.38203 -13.23935 -13.08670 -12.66755 -12.48068 -12.30135 -12.05924 -12.03029 -11.73023 -11.27563 -11.03356 -10.95133 -10.89862 -10.46873 -10.08198 -10.02614 -9.41836 -8.91612 -8.86619 -8.77911 -8.72663 -7.89296 -6.44377 -4.54635 1.30797 1.44882 1.61503 1.96793 2.33456 2.77888 2.85412 3.05136 3.16085 3.17489 3.36516 3.72753 3.79709 3.99601 4.11706 4.39612 4.44683 4.66288 4.75743 4.89604 4.92743 4.99169 5.02913 5.29267 5.41188 5.44010 5.49140 5.58095 5.66580 5.72875 6.06250 6.15739 6.28866 6.34439 6.45449 6.59978 6.73839 6.84170 6.94553 7.30214 7.35813 7.48750 7.71082 7.80557 8.43037 8.58236 9.15360 10.62183 Molecular weight = 371.10amu Principal moments of inertia in cm(-1) A = 0.007246 B = 0.003265 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3863.019069 B = 8572.706999 C =11502.584085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.070 3.930 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.550 4.550 8 H 0.065 0.935 9 C 0.234 3.766 10 N -0.557 5.557 11 C 0.509 3.491 12 O -0.527 6.527 13 C 0.116 3.884 14 N -0.334 5.334 15 C 0.068 3.932 16 C -0.236 4.236 17 C -0.034 4.034 18 C 0.558 3.442 19 F -0.167 7.167 20 F -0.169 7.169 21 F -0.171 7.171 22 N -0.206 5.206 23 C 0.167 3.833 24 C -0.078 4.078 25 C -0.144 4.144 26 C 0.082 3.918 27 F -0.146 7.146 28 C -0.143 4.143 29 C -0.093 4.093 30 H 0.268 0.732 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.148 0.852 34 H 0.123 0.877 35 H 0.188 0.812 36 H 0.158 0.842 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.800 -6.478 5.983 10.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.134 4.134 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.588 4.588 8 H 0.083 0.917 9 C 0.115 3.885 10 N -0.286 5.286 11 C 0.296 3.704 12 O -0.403 6.403 13 C -0.008 4.008 14 N -0.117 5.117 15 C -0.077 4.077 16 C -0.266 4.266 17 C -0.201 4.201 18 C 0.502 3.498 19 F -0.149 7.149 20 F -0.151 7.151 21 F -0.153 7.153 22 N -0.030 5.030 23 C 0.075 3.925 24 C -0.098 4.098 25 C -0.163 4.163 26 C 0.063 3.937 27 F -0.124 7.124 28 C -0.163 4.163 29 C -0.113 4.113 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.165 0.835 34 H 0.141 0.859 35 H 0.205 0.795 36 H 0.176 0.824 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.196 -7.264 4.941 9.736 hybrid contribution 0.902 1.326 0.327 1.637 sum 5.097 -5.938 5.268 9.434 Atomic orbital electron populations 1.69912 1.06060 1.27725 1.48505 1.24931 0.94857 0.99408 0.94227 0.86443 0.80093 0.82970 0.78060 1.19544 1.20627 1.20622 1.21439 0.93712 0.90047 1.53605 0.91721 1.19707 0.87165 0.82067 0.99525 1.45875 1.45691 1.34933 1.02065 1.20297 0.80875 0.84021 0.85196 1.90765 1.37449 1.25042 1.87048 1.21864 1.01178 0.95812 0.81912 1.48373 1.37595 1.05117 1.20600 1.22684 0.94793 1.00679 0.89592 1.21089 1.10070 0.90085 1.05322 1.21950 1.05364 0.94414 0.98351 1.16878 0.73947 0.83209 0.75797 1.93236 1.82207 1.67064 1.72348 1.93221 1.32923 1.93225 1.95715 1.93218 1.83200 1.96735 1.42104 1.77480 1.19741 0.92339 1.13442 1.17523 0.92452 0.95151 0.87353 1.21070 0.95504 0.97861 0.95358 1.20928 0.99955 1.00472 0.94961 1.17635 0.93280 0.99563 0.83203 1.91459 1.90158 1.85241 1.45575 1.20903 0.94184 1.03130 0.98066 1.21064 1.00401 0.96112 0.93717 0.92181 0.93656 0.93916 0.83452 0.85882 0.79494 0.82438 0.85236 0.84846 0.84717 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.85 13.29 55.43 0.74 -21.11 16 2 C 0.07 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 18.41 29.54 -169.99 -5.02 13.39 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.55 -12.31 9.17 -34.44 -0.32 -12.62 16 8 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 9 C 0.23 4.75 4.88 -5.20 -0.03 4.72 16 10 N -0.56 -10.39 2.51 -114.72 -0.29 -10.68 16 11 C 0.51 9.39 7.55 -10.99 -0.08 9.31 16 12 O -0.53 -11.21 15.46 5.55 0.09 -11.13 16 13 C 0.12 1.76 5.67 -5.20 -0.03 1.73 16 14 N -0.33 -5.12 3.40 -62.55 -0.21 -5.33 16 15 C 0.07 0.82 11.45 -17.22 -0.20 0.62 16 16 C -0.24 -2.92 10.73 -40.01 -0.43 -3.35 16 17 C -0.03 -0.51 6.51 -82.40 -0.54 -1.05 16 18 C 0.56 7.70 3.51 36.01 0.13 7.83 16 19 F -0.17 -2.54 17.14 2.25 0.04 -2.50 16 20 F -0.17 -2.24 17.30 2.25 0.04 -2.20 16 21 F -0.17 -2.17 17.30 2.25 0.04 -2.13 16 22 N -0.21 -3.59 11.42 33.67 0.38 -3.21 16 23 C 0.17 3.02 4.77 -83.66 -0.40 2.62 16 24 C -0.08 -1.34 9.54 -39.40 -0.38 -1.71 16 25 C -0.14 -2.18 10.02 -39.54 -0.40 -2.58 16 26 C 0.08 1.25 7.30 -39.40 -0.29 0.97 16 27 F -0.15 -2.16 17.26 2.25 0.04 -2.12 16 28 C -0.14 -2.10 10.02 -39.54 -0.40 -2.50 16 29 C -0.09 -1.51 9.66 -39.40 -0.38 -1.89 16 30 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 31 H 0.05 1.00 7.84 -51.93 -0.41 0.59 16 32 H 0.04 0.85 6.47 -51.93 -0.34 0.52 16 33 H 0.15 2.01 7.85 -51.93 -0.41 1.60 16 34 H 0.12 1.74 7.24 -51.93 -0.38 1.37 16 35 H 0.19 1.50 8.06 -52.48 -0.42 1.08 16 36 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 376.01 15.07 5.67 5.67 Total: -1.00 -28.64 376.01 -5.92 -34.56 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -3.61 Total: 3.15 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -3.82 Total: 3.64 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.62 Total: -40.33 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 9 Polarization: -9.11 SS G_CDS: 0.16 Total: -8.95 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.64 -5.92 -34.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071893404.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.251 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds