Wall clock time and date at job start Tue Mar 31 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47451 * 2 1 4 4 N 1.28444 * 125.19075 * 277.48056 * 3 2 1 5 5 C 1.30862 * 110.93206 * 180.02562 * 4 3 2 6 6 C 1.50701 * 126.06670 * 180.02562 * 5 4 3 7 7 C 1.39672 * 107.86430 * 359.73457 * 5 4 3 8 8 C 1.36599 * 125.18932 * 97.50138 * 3 2 1 9 9 C 1.47126 * 126.89082 * 359.97438 * 8 3 2 10 10 O 1.21645 * 120.00702 * 191.53164 * 9 8 3 11 11 N 1.34783 * 119.99664 * 11.52976 * 9 8 3 12 12 C 1.46504 * 119.99960 * 243.47039 * 11 9 8 13 13 C 1.50695 * 109.47002 * 216.20556 * 12 11 9 14 14 H 1.08001 * 120.00429 * 242.27487 * 13 12 11 15 15 C 1.37874 * 120.00056 * 62.27692 * 13 12 11 16 16 N 1.31516 * 120.00530 * 164.77185 * 15 13 12 17 17 Si 1.86805 * 120.00123 * 344.77044 * 15 13 12 18 18 H 1.48503 * 109.46878 * 85.13505 * 17 15 13 19 19 H 1.48499 * 109.47218 * 205.13423 * 17 15 13 20 20 H 1.48503 * 109.46747 * 325.13609 * 17 15 13 21 21 C 1.40003 * 119.99860 * 63.47237 * 11 9 8 22 22 C 1.38871 * 120.02066 * 187.26332 * 21 11 9 23 23 C 1.38130 * 120.03427 * 179.80697 * 22 21 11 24 24 C 1.38711 * 120.16538 * 0.51437 * 23 22 21 25 25 C 1.39002 * 119.93453 * 359.66212 * 24 23 22 26 26 C 1.38636 * 119.88645 * 0.11366 * 25 24 23 27 27 O 1.36117 * 120.77727 * 180.26798 * 25 24 23 28 28 C 1.43164 * 116.73349 * 342.79237 * 27 25 24 29 29 C 1.53466 * 108.24641 * 46.19453 * 28 27 25 30 30 O 1.36206 * 119.31300 * 179.55899 * 24 23 22 31 31 H 1.08998 * 109.46994 * 305.12515 * 1 2 3 32 32 H 1.09004 * 109.47107 * 65.12728 * 1 2 3 33 33 H 1.09002 * 109.46989 * 185.12336 * 1 2 3 34 34 H 1.09004 * 109.47364 * 239.99568 * 2 1 3 35 35 H 1.09006 * 109.47034 * 120.00111 * 2 1 3 36 36 H 1.09003 * 109.47248 * 89.97360 * 6 5 4 37 37 H 1.08999 * 109.46940 * 209.97288 * 6 5 4 38 38 H 1.09002 * 109.47462 * 329.97485 * 6 5 4 39 39 H 1.08001 * 127.32174 * 180.30080 * 7 5 4 40 40 H 1.08998 * 109.47010 * 96.20437 * 12 11 9 41 41 H 1.08998 * 109.46829 * 336.20932 * 12 11 9 42 42 H 0.96997 * 120.00872 * 180.02562 * 16 15 13 43 43 H 1.08003 * 119.98252 * 0.05172 * 22 21 11 44 44 H 1.08002 * 119.91381 * 180.24231 * 23 22 21 45 45 H 1.08007 * 119.98922 * 179.97438 * 26 25 24 46 46 H 1.08997 * 109.70682 * 165.88263 * 28 27 25 47 47 H 1.08994 * 109.71011 * 286.50504 * 28 27 25 48 48 H 1.09003 * 109.71354 * 59.91700 * 29 28 27 49 49 H 1.09003 * 109.71053 * 180.54883 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1363 2.1246 -1.0408 5 6 2.5993 3.3062 -0.7213 6 6 2.8675 4.4416 -1.6751 7 6 2.7942 3.3304 0.6616 8 6 2.4183 2.0747 1.1068 9 6 2.4391 1.5872 2.4948 10 8 2.6177 2.3672 3.4110 11 7 2.2604 0.2761 2.7512 12 6 1.0957 -0.1675 3.5214 13 6 1.4867 -1.3278 4.3998 14 1 1.0196 -2.2917 4.2610 15 6 2.4408 -1.1591 5.3807 16 7 2.5722 -2.0578 6.3319 17 14 3.5470 0.3460 5.3587 18 1 2.8600 1.4751 6.0360 19 1 4.8142 0.0395 6.0697 20 1 3.8460 0.7200 3.9530 21 6 3.1877 -0.6618 2.2816 22 6 2.9294 -2.0200 2.4129 23 6 3.8423 -2.9456 1.9461 24 6 5.0237 -2.5225 1.3549 25 6 5.2867 -1.1637 1.2254 26 6 4.3682 -0.2350 1.6898 27 8 6.4379 -0.7295 0.6432 28 6 7.4998 -1.6826 0.5264 29 6 6.9117 -2.9936 -0.0128 30 8 5.9157 -3.4502 0.9088 31 1 -0.3633 0.5913 0.8405 32 1 -0.3633 0.4323 -0.9324 33 1 -0.3633 -1.0236 0.0918 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.9716 5.0550 -1.7710 37 1 3.6862 5.0514 -1.2930 38 1 3.1388 4.0397 -2.6514 39 1 3.1620 4.1532 1.2567 40 1 0.3056 -0.4790 2.8382 41 1 0.7366 0.6534 4.1421 42 1 3.2431 -1.9389 7.0222 43 1 2.0125 -2.3527 2.8767 44 1 3.6377 -4.0013 2.0457 45 1 4.5710 0.8212 1.5903 46 1 8.2559 -1.3078 -0.1633 47 1 7.9476 -1.8557 1.5049 48 1 6.4577 -2.8191 -0.9883 49 1 7.7002 -3.7409 -0.1020 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071900180.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:42 Heat of formation + Delta-G solvation = 57.875534 kcal Electronic energy + Delta-G solvation = -36708.215454 eV Core-core repulsion = 32219.592970 eV Total energy + Delta-G solvation = -4488.622484 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 371.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.46544 -40.95105 -39.90359 -37.60728 -36.89736 -35.16056 -34.46287 -32.78050 -31.33212 -30.81564 -30.52625 -30.11487 -28.18402 -27.73497 -27.24409 -24.44473 -23.90249 -22.83027 -22.54838 -21.95061 -20.89500 -20.39017 -19.06189 -18.19812 -17.46000 -17.33321 -16.81039 -16.60633 -16.03205 -15.80782 -15.62523 -15.18522 -14.83414 -14.75193 -14.58853 -14.12367 -14.11056 -13.55993 -13.53504 -13.38946 -13.28272 -13.15956 -12.94293 -12.71289 -12.65522 -12.50942 -12.28780 -12.17615 -11.93836 -11.80026 -11.70844 -11.22075 -10.95523 -10.92377 -10.78007 -10.70964 -10.41451 -10.30094 -10.09542 -9.57904 -9.48680 -8.90156 -8.72714 -8.67583 -8.41765 -8.00071 -6.78966 -6.40251 -4.41878 1.26879 1.82078 1.93180 2.64447 2.70473 3.09255 3.20482 3.35070 3.45836 3.49597 3.61899 3.68382 4.23133 4.36328 4.39022 4.58163 4.79277 4.87593 4.94801 5.02987 5.03518 5.06780 5.08170 5.17129 5.29084 5.40028 5.49143 5.54451 5.64225 5.66649 5.71730 5.75955 5.79522 5.85269 5.90587 5.95995 6.07029 6.09576 6.20387 6.37818 6.48937 6.52511 6.62919 6.70307 6.93655 6.97381 7.08544 7.22131 7.35175 7.53177 7.75253 7.92920 8.07108 8.20625 8.32028 8.53679 9.21031 10.64578 Molecular weight = 371.17amu Principal moments of inertia in cm(-1) A = 0.007218 B = 0.006005 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3878.172101 B = 4661.658747 C = 6685.715667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.088 3.912 3 N -0.250 5.250 4 N -0.275 5.275 5 C 0.010 3.990 6 C -0.061 4.061 7 C -0.170 4.170 8 C -0.044 4.044 9 C 0.614 3.386 10 O -0.463 6.463 11 N -0.608 5.608 12 C 0.205 3.795 13 C -0.543 4.543 14 H 0.090 0.910 15 C 0.096 3.904 16 N -0.861 5.861 17 Si 0.879 3.121 18 H -0.280 1.280 19 H -0.307 1.307 20 H -0.233 1.233 21 C 0.212 3.788 22 C -0.125 4.125 23 C -0.092 4.092 24 C 0.003 3.997 25 C 0.069 3.931 26 C -0.181 4.181 27 O -0.312 6.312 28 C 0.022 3.978 29 C 0.023 3.977 30 O -0.311 6.311 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.133 0.867 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.157 0.843 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.270 0.730 43 H 0.185 0.815 44 H 0.132 0.868 45 H 0.120 0.880 46 H 0.114 0.886 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.387 2.094 -15.548 16.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.031 4.031 3 N -0.040 5.040 4 N -0.110 5.110 5 C -0.146 4.146 6 C -0.120 4.120 7 C -0.199 4.199 8 C -0.173 4.173 9 C 0.402 3.598 10 O -0.332 6.332 11 N -0.336 5.336 12 C 0.089 3.911 13 C -0.579 4.579 14 H 0.108 0.892 15 C -0.114 4.114 16 N -0.493 5.493 17 Si 0.708 3.292 18 H -0.206 1.206 19 H -0.235 1.235 20 H -0.157 1.157 21 C 0.116 3.884 22 C -0.146 4.146 23 C -0.112 4.112 24 C -0.042 4.042 25 C 0.024 3.976 26 C -0.204 4.204 27 O -0.226 6.226 28 C -0.054 4.054 29 C -0.053 4.053 30 O -0.226 6.226 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.151 0.849 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.175 0.825 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.201 0.799 44 H 0.150 0.850 45 H 0.138 0.862 46 H 0.132 0.868 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.088 1.764 -15.677 16.075 hybrid contribution 1.409 1.213 0.908 2.069 sum 4.497 2.977 -14.768 15.722 Atomic orbital electron populations 1.22117 0.93516 1.03659 1.02827 1.22745 0.96245 0.76894 1.07238 1.45774 1.43769 1.11895 1.02519 1.73000 1.19700 1.03978 1.14353 1.21918 1.04730 0.94120 0.93791 1.20014 1.01843 0.93283 0.96842 1.22023 1.06720 0.96532 0.94609 1.22230 1.10342 0.94306 0.90380 1.17200 0.73793 0.83317 0.85439 1.90733 1.38243 1.58327 1.45898 1.46938 1.27013 1.03155 1.56463 1.20056 0.83028 0.97087 0.90894 1.20838 1.24898 0.97288 1.14877 0.89233 1.25006 0.96611 0.96442 0.93362 1.69964 1.32457 1.35675 1.11223 0.87116 0.79592 0.81690 0.80812 1.20589 1.23516 1.15660 1.16905 0.88057 0.89686 0.93759 1.22017 1.04008 0.89669 0.98863 1.20400 0.90680 1.00496 0.99590 1.18789 0.93017 0.86456 1.05906 1.18291 0.87742 0.91090 1.00505 1.19892 0.94462 0.98612 1.07420 1.86256 1.21484 1.38297 1.76612 1.23532 0.89268 0.89885 1.02709 1.23469 0.91952 0.97349 0.92518 1.86300 1.41336 1.34706 1.60240 0.91741 0.92001 0.89807 0.88824 0.84940 0.91185 0.90844 0.91270 0.82490 0.93813 0.93637 0.92020 0.79852 0.85042 0.86246 0.86817 0.90895 0.91151 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 10.21 37.16 0.38 -1.63 16 2 C 0.09 1.29 6.55 -4.04 -0.03 1.26 16 3 N -0.25 -4.15 3.35 -57.14 -0.19 -4.34 16 4 N -0.28 -4.49 11.90 33.64 0.40 -4.09 16 5 C 0.01 0.16 7.22 -82.47 -0.60 -0.44 16 6 C -0.06 -0.65 10.45 36.01 0.38 -0.27 16 7 C -0.17 -2.79 10.80 -38.98 -0.42 -3.22 16 8 C -0.04 -0.80 5.49 -82.07 -0.45 -1.25 16 9 C 0.61 12.60 4.41 -12.65 -0.06 12.54 16 10 O -0.46 -10.69 14.48 5.24 0.08 -10.61 16 11 N -0.61 -12.24 0.35 -116.03 -0.04 -12.29 16 12 C 0.20 4.22 5.29 -5.19 -0.03 4.19 16 13 C -0.54 -12.90 6.27 -34.44 -0.22 -13.12 16 14 H 0.09 2.20 7.22 -52.49 -0.38 1.82 16 15 C 0.10 2.53 5.19 -17.82 -0.09 2.43 16 16 N -0.86 -24.14 13.96 55.43 0.77 -23.36 16 17 Si 0.88 22.59 23.72 -169.99 -4.03 18.55 16 18 H -0.28 -7.57 7.11 56.52 0.40 -7.17 16 19 H -0.31 -8.22 7.11 56.52 0.40 -7.82 16 20 H -0.23 -5.74 2.55 56.52 0.14 -5.60 16 21 C 0.21 4.18 1.47 -83.69 -0.12 4.05 16 22 C -0.13 -2.38 7.53 -39.39 -0.30 -2.68 16 23 C -0.09 -1.65 9.95 -39.45 -0.39 -2.04 16 24 C 0.00 0.06 6.49 -39.12 -0.25 -0.19 16 25 C 0.07 1.29 6.49 -39.15 -0.25 1.03 16 26 C -0.18 -3.60 7.98 -39.23 -0.31 -3.91 16 27 O -0.31 -5.32 10.42 -32.89 -0.34 -5.67 16 28 C 0.02 0.27 7.26 37.40 0.27 0.54 16 29 C 0.02 0.27 7.26 37.40 0.27 0.54 16 30 O -0.31 -4.97 10.42 -33.18 -0.35 -5.31 16 31 H 0.06 0.86 8.00 -51.93 -0.42 0.45 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.13 2.12 2.58 -51.93 -0.13 1.98 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.16 2.35 8.06 -52.49 -0.42 1.92 16 40 H 0.04 0.77 7.98 -51.93 -0.41 0.36 16 41 H 0.05 1.00 7.71 -51.93 -0.40 0.60 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.18 3.61 4.40 -52.48 -0.23 3.37 16 44 H 0.13 2.11 8.06 -52.49 -0.42 1.68 16 45 H 0.12 2.50 6.40 -52.48 -0.34 2.16 16 46 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 381.81 15.07 5.75 5.75 Total: -1.00 -31.63 381.81 -6.95 -38.57 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.78 Total: 4.95 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.22 Total: -2.15 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.94 Total: -44.08 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.61 Total: -21.59 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.03 Total: 18.55 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.63 -6.95 -38.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071900180.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.447 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds