Wall clock time and date at job start Tue Mar 31 2020 06:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00154 * 2 1 4 4 H 1.48494 * 109.47393 * 270.00472 * 3 2 1 5 5 H 1.48500 * 109.46812 * 30.00303 * 3 2 1 6 6 H 1.48503 * 109.47068 * 149.99977 * 3 2 1 7 7 C 1.37880 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99770 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46743 * 179.97438 * 9 7 2 11 11 C 1.36036 * 126.35074 * 269.98144 * 10 9 7 12 12 C 1.50700 * 124.94888 * 0.02562 * 11 10 9 13 13 C 1.53006 * 109.46785 * 90.00017 * 12 11 10 14 14 S 1.81405 * 109.46733 * 180.02562 * 13 12 11 15 15 C 1.76208 * 102.99706 * 180.02562 * 14 13 12 16 16 C 1.38954 * 120.06576 * 359.71718 * 15 14 13 17 17 C 1.38092 * 119.93160 * 179.79183 * 16 15 14 18 18 C 1.38396 * 120.06484 * 0.49307 * 17 16 15 19 19 Cl 1.73599 * 119.93176 * 179.71969 * 18 17 16 20 20 C 1.38400 * 120.13618 * 359.73997 * 18 17 16 21 21 C 1.38092 * 120.06525 * 0.02755 * 20 18 17 22 22 N 1.30106 * 110.10195 * 180.02562 * 11 10 9 23 23 C 1.35787 * 109.64359 * 359.97438 * 22 11 10 24 24 C 1.39734 * 133.60143 * 179.97438 * 23 22 11 25 25 C 1.36605 * 119.88806 * 180.02562 * 24 23 22 26 26 C 1.38776 * 120.66622 * 359.97438 * 25 24 23 27 27 C 1.37851 * 120.45485 * 0.03810 * 26 25 24 28 28 C 1.38058 * 126.34607 * 90.02321 * 10 9 7 29 29 H 0.96996 * 119.99828 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47213 * 60.00416 * 9 7 2 31 31 H 1.08994 * 109.47048 * 299.99942 * 9 7 2 32 32 H 1.08993 * 109.47363 * 209.99975 * 12 11 10 33 33 H 1.09003 * 109.47256 * 330.00646 * 12 11 10 34 34 H 1.08993 * 109.47136 * 300.00097 * 13 12 11 35 35 H 1.09003 * 109.46709 * 60.00294 * 13 12 11 36 36 H 1.07998 * 120.03529 * 0.03491 * 16 15 14 37 37 H 1.07994 * 119.96633 * 180.20938 * 17 16 15 38 38 H 1.07997 * 119.97165 * 179.97438 * 20 18 17 39 39 H 1.08003 * 120.03385 * 179.97438 * 21 20 18 40 40 H 1.08009 * 120.05649 * 0.29744 * 24 23 22 41 41 H 1.08001 * 119.66343 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.77372 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.15788 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 2.7260 -4.2253 -1.0981 12 6 2.4109 -3.8573 -2.5251 13 6 3.4011 -2.7958 -3.0085 14 16 3.0214 -2.3523 -4.7261 15 6 4.2445 -1.1409 -5.1022 16 6 5.1750 -0.7689 -4.1397 17 6 6.1350 0.1777 -4.4388 18 6 6.1645 0.7630 -5.6926 19 17 7.3683 1.9579 -6.0626 20 6 5.2360 0.3981 -6.6518 21 6 4.2766 -0.5514 -6.3601 22 7 3.5376 -5.1751 -0.7351 23 6 3.5914 -5.2364 0.6203 24 6 4.2852 -6.0483 1.5215 25 6 4.1275 -5.8626 2.8656 26 6 3.2835 -4.8730 3.3493 27 6 2.5888 -4.0604 2.4790 28 6 2.7353 -4.2354 1.1095 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8896 32 1 2.4917 -4.7431 -3.1550 33 1 1.3970 -3.4615 -2.5829 34 1 3.3204 -1.9100 -2.3786 35 1 4.4151 -3.1916 -2.9507 36 1 5.1500 -1.2224 -3.1598 37 1 6.8605 0.4647 -3.6922 38 1 5.2612 0.8569 -7.6292 39 1 3.5520 -0.8355 -7.1090 40 1 4.9484 -6.8184 1.1559 41 1 4.6652 -6.4925 3.5589 42 1 3.1699 -4.7385 4.4149 43 1 1.9328 -3.2920 2.8606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075284437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:11 Heat of formation + Delta-G solvation = 75.084233 kcal Electronic energy + Delta-G solvation = -27541.901235 eV Core-core repulsion = 23703.935255 eV Total energy + Delta-G solvation = -3837.965980 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 372.076 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58305 -39.20375 -37.07264 -36.56585 -34.22993 -33.45759 -32.42427 -31.26848 -30.89292 -29.92241 -28.41385 -27.31213 -24.74051 -23.49519 -22.89764 -22.74817 -21.57505 -21.22992 -19.29442 -17.93033 -16.98729 -16.86167 -16.67242 -16.26209 -15.64669 -15.36530 -14.86307 -14.64625 -14.59358 -14.51396 -14.10123 -13.72744 -13.71121 -13.49264 -13.35478 -12.81922 -12.64908 -12.45207 -12.07120 -11.94240 -11.84267 -11.61376 -11.55978 -11.39951 -11.22229 -11.03045 -10.99000 -10.96371 -10.89636 -10.40530 -10.28665 -10.17982 -9.55064 -9.42487 -9.41625 -9.24194 -8.80461 -7.76233 -7.53632 -7.36731 -6.43516 -4.53393 0.87879 1.12358 1.31984 1.53927 2.00609 2.04820 2.40026 3.09375 3.17461 3.18094 3.30087 3.40305 3.49686 4.14093 4.34883 4.55629 4.59532 4.69345 4.90805 5.01082 5.02692 5.09344 5.11841 5.22418 5.35884 5.37614 5.47671 5.63697 5.72465 5.74119 5.87949 5.89478 5.92726 5.98716 6.05842 6.06900 6.09036 6.18074 6.39023 6.52601 6.73463 6.79088 6.91719 7.04530 7.24805 7.38363 7.47267 7.67671 7.85470 8.44768 8.53067 9.15468 10.63721 Molecular weight = 372.08amu Principal moments of inertia in cm(-1) A = 0.008556 B = 0.002857 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.636349 B = 9798.322945 C =11007.693181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.074 3.926 3 Si 0.895 3.105 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.236 3.764 10 N -0.451 5.451 11 C 0.283 3.717 12 C -0.017 4.017 13 C -0.104 4.104 14 S -0.097 6.097 15 C -0.071 4.071 16 C -0.118 4.118 17 C -0.088 4.088 18 C -0.046 4.046 19 Cl -0.076 7.076 20 C -0.093 4.093 21 C -0.092 4.092 22 N -0.511 5.511 23 C 0.039 3.961 24 C -0.074 4.074 25 C -0.137 4.137 26 C -0.122 4.122 27 C -0.092 4.092 28 C 0.055 3.945 29 H 0.270 0.730 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.778 -3.134 -7.408 11.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.131 4.131 3 Si 0.722 3.278 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.118 3.882 10 N -0.136 5.136 11 C 0.016 3.984 12 C -0.057 4.057 13 C -0.253 4.253 14 S 0.150 5.850 15 C -0.185 4.185 16 C -0.143 4.143 17 C -0.109 4.109 18 C -0.076 4.076 19 Cl -0.047 7.047 20 C -0.113 4.113 21 C -0.117 4.117 22 N -0.232 5.232 23 C -0.082 4.082 24 C -0.094 4.094 25 C -0.157 4.157 26 C -0.142 4.142 27 C -0.113 4.113 28 C -0.058 4.058 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.048 -3.827 -8.619 11.774 hybrid contribution 1.026 2.336 1.454 2.936 sum 8.074 -1.492 -7.166 10.898 Atomic orbital electron populations 1.69896 1.06024 1.27919 1.48205 1.24874 0.94883 0.99311 0.94032 0.86506 0.79973 0.82557 0.78772 1.19942 1.20639 1.19562 1.21194 0.93459 0.89505 1.54098 0.91876 1.19768 0.86954 0.81625 0.99875 1.45992 1.35961 1.27973 1.03652 1.22927 0.93769 0.91271 0.90436 1.19626 0.99813 0.98577 0.87677 1.23746 1.03003 1.03797 0.94728 1.85294 1.39036 1.45201 1.15495 1.21904 0.99013 1.00503 0.97068 1.21266 0.94954 0.98677 0.99379 1.20968 0.98849 0.95898 0.95144 1.20875 0.94580 0.96155 0.95941 1.98360 1.55633 1.56013 1.94716 1.20928 0.93937 0.97469 0.98999 1.20701 0.99025 0.96642 0.95309 1.70317 1.21184 1.20845 1.10854 1.19068 1.00480 0.98343 0.90307 1.19837 0.99305 0.98688 0.91588 1.20474 1.00887 0.99741 0.94642 1.20743 0.98189 0.96459 0.98787 1.20076 1.01359 1.00482 0.89359 1.18933 0.99786 0.97127 0.89905 0.92033 0.93058 0.93430 0.88196 0.88423 0.87049 0.88896 0.84563 0.84671 0.84590 0.84505 0.86275 0.86247 0.86054 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.22 13.29 55.43 0.74 -22.48 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 3 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -13.42 8.99 -34.44 -0.31 -13.73 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.24 5.39 5.69 -5.19 -0.03 5.36 16 10 N -0.45 -9.46 2.79 -112.43 -0.31 -9.77 16 11 C 0.28 5.43 7.11 -154.83 -1.10 4.33 16 12 C -0.02 -0.26 5.51 -27.88 -0.15 -0.42 16 13 C -0.10 -1.58 4.32 37.16 0.16 -1.41 16 14 S -0.10 -1.34 21.92 -107.50 -2.36 -3.70 16 15 C -0.07 -0.97 6.11 -39.05 -0.24 -1.21 16 16 C -0.12 -1.64 9.36 -39.37 -0.37 -2.00 16 17 C -0.09 -1.12 9.82 -39.58 -0.39 -1.51 16 18 C -0.05 -0.55 6.32 -39.46 -0.25 -0.80 16 19 Cl -0.08 -0.84 28.95 -51.86 -1.50 -2.34 16 20 C -0.09 -1.03 9.82 -39.58 -0.39 -1.42 16 21 C -0.09 -1.09 9.79 -39.37 -0.39 -1.48 16 22 N -0.51 -10.14 11.27 -8.24 -0.09 -10.23 16 23 C 0.04 0.76 7.23 -84.70 -0.61 0.15 16 24 C -0.07 -1.22 10.05 -39.61 -0.40 -1.62 16 25 C -0.14 -1.97 9.96 -39.97 -0.40 -2.36 16 26 C -0.12 -1.83 10.03 -39.52 -0.40 -2.23 16 27 C -0.09 -1.68 10.05 -39.50 -0.40 -2.08 16 28 C 0.06 1.12 6.88 -83.98 -0.58 0.55 16 29 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 30 H 0.05 1.19 6.99 -51.93 -0.36 0.82 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.10 1.55 7.01 -51.93 -0.36 1.19 16 34 H 0.11 1.97 7.34 -51.93 -0.38 1.58 16 35 H 0.09 1.35 7.76 -51.92 -0.40 0.95 16 36 H 0.14 1.89 5.88 -52.49 -0.31 1.58 16 37 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 40 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 395.37 15.07 5.96 5.96 Total: -1.00 -27.61 395.37 -14.09 -41.70 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.17 Total: 6.09 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -6.33 Total: -20.13 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.33 Total: -42.48 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.36 Total: -3.70 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -27.61 -14.09 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075284437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.787 kcal (2) G-P(sol) polarization free energy of solvation -27.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds