Wall clock time and date at job start Tue Mar 31 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31139 * 126.55093 * 2 1 4 4 C 1.34485 * 105.61662 * 180.11859 * 3 2 1 5 5 C 1.50705 * 126.28908 * 179.90062 * 4 3 2 6 6 H 1.08999 * 109.49619 * 359.78252 * 5 4 3 7 7 C 1.53046 * 109.49905 * 239.71621 * 5 4 3 8 8 C 1.53036 * 109.53553 * 178.64971 * 7 5 4 9 9 C 1.53196 * 109.31266 * 61.36763 * 8 7 5 10 10 N 1.46924 * 108.77653 * 305.36248 * 9 8 7 11 11 C 1.34774 * 120.63444 * 233.58677 * 10 9 8 12 12 O 1.21279 * 120.00493 * 179.97438 * 11 10 9 13 13 C 1.50706 * 119.99637 * 359.97438 * 11 10 9 14 14 C 1.50702 * 109.47088 * 179.97438 * 13 11 10 15 15 C 1.38311 * 119.92915 * 89.99653 * 14 13 11 16 16 C 1.38096 * 120.06782 * 180.02562 * 15 14 13 17 17 C 1.38883 * 119.93001 * 359.97438 * 16 15 14 18 18 O 1.35752 * 120.06733 * 179.72546 * 17 16 15 19 19 C 1.34835 * 116.99867 * 174.45565 * 18 17 16 20 20 H 1.08001 * 119.99908 * 5.03572 * 19 18 17 21 21 C 1.38654 * 119.99862 * 185.04415 * 19 18 17 22 22 N 1.31554 * 119.99970 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99933 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46952 * 60.00228 * 23 21 19 25 25 H 1.48502 * 109.46943 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47529 * 300.00142 * 23 21 19 27 27 C 1.38878 * 119.86281 * 0.02562 * 17 16 15 28 28 C 1.38100 * 119.93217 * 359.97321 * 27 17 16 29 29 C 1.46932 * 118.73683 * 53.85768 * 10 9 8 30 30 N 1.29946 * 107.42715 * 359.64532 * 4 3 2 31 31 O 1.21307 * 110.24748 * 0.22091 * 30 4 3 32 32 H 1.09004 * 109.46655 * 180.25352 * 1 2 3 33 33 H 1.09000 * 109.47254 * 300.24873 * 1 2 3 34 34 H 1.08999 * 109.46958 * 60.25071 * 1 2 3 35 35 H 1.09001 * 109.45445 * 58.63204 * 7 5 4 36 36 H 1.08998 * 109.44823 * 298.66761 * 7 5 4 37 37 H 1.08996 * 109.50004 * 301.41647 * 8 7 5 38 38 H 1.08994 * 109.52498 * 181.33285 * 8 7 5 39 39 H 1.09000 * 109.58843 * 185.57563 * 9 8 7 40 40 H 1.09001 * 109.70499 * 65.21796 * 9 8 7 41 41 H 1.08992 * 109.47282 * 60.00082 * 13 11 10 42 42 H 1.08999 * 109.46898 * 299.99462 * 13 11 10 43 43 H 1.08001 * 119.96634 * 0.02562 * 15 14 13 44 44 H 1.07991 * 120.03444 * 180.02562 * 16 15 14 45 45 H 0.97002 * 120.00599 * 179.97438 * 22 21 19 46 46 H 1.08007 * 120.03391 * 179.97438 * 27 17 16 47 47 H 1.08002 * 119.96676 * 180.02562 * 28 27 17 48 48 H 1.08997 * 109.58368 * 65.93138 * 29 10 9 49 49 H 1.09003 * 109.58349 * 186.34980 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0535 0.0000 4 6 3.5441 0.5730 -0.0027 5 6 4.8112 1.3888 -0.0059 6 1 4.5608 2.4497 -0.0096 7 6 5.6317 1.0532 -1.2534 8 6 6.9024 1.9057 -1.2748 9 6 7.7487 1.5847 -0.0387 10 7 6.9206 1.7659 1.1613 11 6 7.3339 2.5624 2.1670 12 8 6.6410 2.7041 3.1522 13 6 8.6570 3.2768 2.0672 14 6 8.8807 4.0961 3.3121 15 6 9.5267 3.5366 4.3996 16 6 9.7327 4.2846 5.5420 17 6 9.2909 5.6001 5.5981 18 8 9.4869 6.3362 6.7217 19 6 9.1380 7.6376 6.6696 20 1 8.6488 8.0307 5.7906 21 6 9.4073 8.4711 7.7444 22 7 10.0029 7.9921 8.8152 23 14 8.9246 10.2741 7.6720 24 1 7.4549 10.3861 7.4906 25 1 9.3202 10.9436 8.9371 26 1 9.6153 10.9261 6.5305 27 6 8.6425 6.1590 4.5044 28 6 8.4395 5.4058 3.3648 29 6 5.6362 1.0576 1.2469 30 7 3.4646 -0.7240 0.0035 31 8 2.3029 -1.0735 0.0052 32 1 -0.3633 -1.0277 0.0045 33 1 -0.3634 0.5177 0.8877 34 1 -0.3633 0.5099 -0.8922 35 1 5.0394 1.2618 -2.1444 36 1 5.9027 -0.0024 -1.2364 37 1 6.6324 2.9616 -1.2665 38 1 7.4750 1.6836 -2.1752 39 1 8.6048 2.2581 0.0030 40 1 8.0973 0.5532 -0.0898 41 1 8.6508 3.9332 1.1971 42 1 9.4583 2.5450 1.9647 43 1 9.8704 2.5138 4.3553 44 1 10.2376 3.8474 6.3907 45 1 10.1917 8.5752 9.5670 46 1 8.2974 7.1816 4.5451 47 1 7.9358 5.8400 2.5138 48 1 5.8140 -0.0166 1.2973 49 1 5.0981 1.3830 2.1372 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075610193.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:58 Heat of formation + Delta-G solvation = 29.037995 kcal Electronic energy + Delta-G solvation = -32417.498470 eV Core-core repulsion = 27927.625496 eV Total energy + Delta-G solvation = -4489.872974 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 371.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.96895 -40.42467 -38.96127 -37.92598 -36.43510 -36.15354 -34.40656 -32.87592 -32.43487 -31.78020 -30.90566 -30.09487 -29.23165 -27.06043 -25.60715 -25.31418 -24.54218 -23.70145 -22.36402 -21.91929 -21.06805 -20.25378 -19.05323 -18.50609 -17.92606 -17.85266 -17.21392 -16.91147 -16.02754 -15.74773 -15.24697 -15.05580 -14.74390 -14.56502 -14.45561 -14.37624 -14.13355 -13.95931 -13.73840 -13.61333 -13.51205 -13.36578 -13.23774 -12.92223 -12.64574 -12.60794 -12.43287 -12.09762 -11.87054 -11.76764 -11.51590 -11.46874 -11.39033 -11.31403 -11.20858 -11.05832 -10.78806 -10.68771 -10.59057 -10.39788 -10.22854 -9.67985 -9.27959 -8.83930 -8.77182 -8.09460 -7.11080 -6.39950 -3.98521 0.76336 1.81752 2.28536 2.30963 2.43217 2.71222 2.81826 3.16467 3.17523 3.20187 3.26218 3.64316 4.01112 4.23549 4.31346 4.39802 4.50282 4.57179 4.65411 4.76346 4.77070 4.84951 4.92748 5.02712 5.07915 5.15524 5.17876 5.24716 5.28490 5.34632 5.36794 5.37087 5.41909 5.50110 5.53185 5.64419 5.65514 5.71324 5.77758 5.85984 5.90148 6.26290 6.29314 6.47213 6.75547 6.96774 7.10206 7.26875 7.31162 7.42263 7.50245 7.79941 7.89448 8.05266 8.25618 9.05578 9.76617 10.78124 Molecular weight = 371.17amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.001695 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.617925 B =16515.265222 C =17596.995083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.177 3.823 3 N -0.480 5.480 4 C 0.183 3.817 5 C -0.011 4.011 6 H 0.106 0.894 7 C -0.110 4.110 8 C -0.134 4.134 9 C 0.105 3.895 10 N -0.621 5.621 11 C 0.513 3.487 12 O -0.517 6.517 13 C -0.077 4.077 14 C -0.172 4.172 15 C -0.059 4.059 16 C -0.192 4.192 17 C 0.157 3.843 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.232 4.232 28 C -0.056 4.056 29 C 0.124 3.876 30 N -0.379 5.379 31 O 0.076 5.924 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.270 0.730 46 H 0.126 0.874 47 H 0.103 0.897 48 H 0.071 0.929 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.055 -17.034 -24.849 32.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.043 4.043 3 N -0.214 5.214 4 C -0.091 4.091 5 C -0.032 4.032 6 H 0.125 0.875 7 C -0.148 4.148 8 C -0.172 4.172 9 C -0.018 4.018 10 N -0.357 5.357 11 C 0.302 3.698 12 O -0.390 6.390 13 C -0.117 4.117 14 C -0.173 4.173 15 C -0.077 4.077 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.082 6.082 19 C -0.467 4.467 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.499 5.499 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.252 4.252 28 C -0.074 4.074 29 C 0.000 4.000 30 N -0.086 5.086 31 O 0.017 5.983 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.080 0.920 46 H 0.144 0.856 47 H 0.121 0.879 48 H 0.090 0.910 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.456 -16.988 -23.800 31.783 hybrid contribution -0.588 0.817 -0.177 1.022 sum -13.044 -16.170 -23.977 31.725 Atomic orbital electron populations 1.20409 0.80123 1.05657 1.05819 1.28879 0.98987 0.80722 0.95730 1.71920 1.00252 1.28936 1.20319 1.25606 0.94895 0.88161 1.00429 1.20056 0.86745 0.98967 0.97448 0.87536 1.21561 0.96166 1.00953 0.96129 1.21924 0.96145 1.00837 0.98273 1.21793 0.93786 1.02359 0.83884 1.48164 1.20165 1.48161 1.19247 1.21139 0.88607 0.78145 0.81892 1.90744 1.56263 1.61601 1.30401 1.20433 0.93960 0.98694 0.98579 1.18646 1.08381 0.94799 0.95456 1.20395 0.97417 0.97666 0.92269 1.20151 1.08318 0.93271 0.99351 1.19387 0.92145 0.91492 0.86655 1.83978 1.72933 1.22031 1.29223 1.21279 1.39590 0.81886 1.03966 0.89150 1.25282 0.96494 1.00082 0.94699 1.70031 1.38506 1.36341 1.04986 0.85786 0.79122 0.80517 0.78028 1.19520 1.20306 1.19531 1.21100 1.07810 1.01615 0.94640 1.20498 0.96888 0.93217 0.96819 1.21521 0.84459 0.96787 0.97283 1.74608 0.97309 1.15601 1.21101 1.85305 1.11484 1.35807 1.65688 0.88437 0.87700 0.87817 0.91297 0.90873 0.90819 0.89886 0.88884 0.91144 0.88936 0.88923 0.87416 0.86553 0.92027 0.85596 0.87857 0.91046 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.16 10.51 36.01 0.38 0.22 16 2 C 0.18 1.37 8.51 -13.05 -0.11 1.26 16 3 N -0.48 -5.12 11.55 -9.87 -0.11 -5.24 16 4 C 0.18 1.97 6.73 -156.38 -1.05 0.92 16 5 C -0.01 -0.11 2.82 -91.42 -0.26 -0.37 16 6 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 7 C -0.11 -0.80 5.15 -26.69 -0.14 -0.93 16 8 C -0.13 -0.78 6.08 -26.61 -0.16 -0.95 16 9 C 0.10 0.73 6.34 -3.71 -0.02 0.71 16 10 N -0.62 -6.79 2.97 -172.50 -0.51 -7.30 16 11 C 0.51 7.44 7.69 -10.98 -0.08 7.35 16 12 O -0.52 -10.10 15.45 5.56 0.09 -10.02 16 13 C -0.08 -0.99 4.17 -29.03 -0.12 -1.11 16 14 C -0.17 -3.06 4.38 -104.57 -0.46 -3.52 16 15 C -0.06 -1.12 9.69 -39.61 -0.38 -1.51 16 16 C -0.19 -4.29 9.99 -39.39 -0.39 -4.68 16 17 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 18 O -0.18 -5.27 9.76 0.03 0.00 -5.27 16 19 C -0.39 -11.25 9.49 30.89 0.29 -10.96 16 20 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.88 13.67 55.48 0.76 -25.12 16 23 Si 0.94 21.01 29.55 -169.99 -5.02 15.98 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 27 C -0.23 -5.32 9.17 -39.39 -0.36 -5.68 16 28 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 29 C 0.12 1.39 5.73 -3.48 -0.02 1.37 16 30 N -0.38 -4.11 12.16 30.90 0.38 -3.74 16 31 O 0.08 0.70 11.31 18.12 0.20 0.90 16 32 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 33 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.10 0.14 8.14 -51.93 -0.42 -0.29 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.53 5.93 -51.93 -0.31 0.22 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.95 7.63 -51.93 -0.40 0.56 16 42 H 0.09 0.95 7.89 -51.93 -0.41 0.54 16 43 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.12 2.51 8.06 -52.49 -0.42 2.08 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.13 2.87 5.64 -52.48 -0.30 2.57 16 47 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.10 1.34 7.00 -51.93 -0.36 0.98 16 LS Contribution 409.22 15.07 6.17 6.17 Total: -1.00 -37.37 409.22 -8.37 -45.74 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.68 Total: 2.52 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -3.63 Total: -14.63 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.51 Total: -41.39 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.29 Total: -14.39 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.37 -8.37 -45.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075610193.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.780 kcal (2) G-P(sol) polarization free energy of solvation -37.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds