Wall clock time and date at job start Tue Mar 31 2020 05:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31122 * 126.55283 * 2 1 4 4 C 1.34498 * 105.61357 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.28645 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.52236 * 0.08125 * 5 4 3 7 7 C 1.53042 * 109.49678 * 120.16335 * 5 4 3 8 8 C 1.53044 * 109.53959 * 181.31647 * 7 5 4 9 9 C 1.53629 * 109.23872 * 298.51409 * 8 7 5 10 10 N 1.46921 * 108.54535 * 54.85470 * 9 8 7 11 11 C 1.34777 * 120.63163 * 126.36686 * 10 9 8 12 12 O 1.21280 * 120.00073 * 179.97438 * 11 10 9 13 13 C 1.50697 * 119.99730 * 359.72145 * 11 10 9 14 14 C 1.50706 * 109.47036 * 179.97438 * 13 11 10 15 15 C 1.38294 * 119.93130 * 269.72914 * 14 13 11 16 16 C 1.38099 * 120.07055 * 179.72623 * 15 14 13 17 17 C 1.38883 * 119.92825 * 0.51951 * 16 15 14 18 18 O 1.35747 * 120.07110 * 179.72707 * 17 16 15 19 19 C 1.34836 * 117.00441 * 174.49173 * 18 17 16 20 20 H 1.08003 * 119.99161 * 5.05149 * 19 18 17 21 21 C 1.38650 * 120.00311 * 185.05729 * 19 18 17 22 22 N 1.31551 * 119.99951 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99884 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47197 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47262 * 120.00047 * 23 21 19 26 26 H 1.48504 * 109.47274 * 240.00171 * 23 21 19 27 27 C 1.38883 * 119.86254 * 359.75160 * 17 16 15 28 28 C 1.38103 * 119.92676 * 0.02562 * 27 17 16 29 29 C 1.46931 * 118.74058 * 306.09368 * 10 9 8 30 30 N 1.29939 * 107.42331 * 0.24713 * 4 3 2 31 31 O 1.21298 * 110.25226 * 359.57832 * 30 4 3 32 32 H 1.09000 * 109.47652 * 89.99159 * 1 2 3 33 33 H 1.09002 * 109.47743 * 209.99494 * 1 2 3 34 34 H 1.09003 * 109.47332 * 329.99635 * 1 2 3 35 35 H 1.09005 * 109.46151 * 301.33616 * 7 5 4 36 36 H 1.09003 * 109.45682 * 61.29550 * 7 5 4 37 37 H 1.09003 * 109.49516 * 58.58323 * 8 7 5 38 38 H 1.08995 * 109.50082 * 178.65078 * 8 7 5 39 39 H 1.08999 * 109.73857 * 295.11828 * 9 8 7 40 40 H 1.08998 * 109.65739 * 174.54875 * 9 8 7 41 41 H 1.08996 * 109.47419 * 299.99635 * 13 11 10 42 42 H 1.09002 * 109.47566 * 60.00041 * 13 11 10 43 43 H 1.08001 * 119.96614 * 359.97036 * 15 14 13 44 44 H 1.08000 * 120.04137 * 180.26759 * 16 15 14 45 45 H 0.97006 * 120.00137 * 180.02562 * 22 21 19 46 46 H 1.07992 * 120.03453 * 179.97438 * 27 17 16 47 47 H 1.07997 * 119.96091 * 180.02562 * 28 27 17 48 48 H 1.08992 * 109.59034 * 173.65002 * 29 10 9 49 49 H 1.09003 * 109.58454 * 294.07308 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0533 0.0000 4 6 3.5441 0.5726 0.0006 5 6 4.8112 1.3885 0.0003 6 1 4.5613 2.4494 0.0010 7 6 5.6328 1.0563 1.2480 8 6 6.9041 1.9082 1.2654 9 6 7.7514 1.5785 0.0270 10 7 6.9196 1.7608 -1.1703 11 6 7.3323 2.5540 -2.1788 12 8 6.6367 2.6960 -3.1621 13 6 8.6554 3.2688 -2.0822 14 6 8.8788 4.0830 -3.3305 15 6 9.5296 3.5210 -4.4136 16 6 9.7309 4.2626 -5.5610 17 6 9.2886 5.5777 -5.6226 18 8 9.4898 6.3111 -6.7470 19 6 8.9365 7.5401 -6.7836 20 1 8.4334 7.9318 -5.9118 21 6 9.0131 8.3009 -7.9402 22 7 9.6253 7.8234 -9.0021 23 14 8.2459 10.0032 -7.9909 24 1 7.6217 10.3042 -6.6775 25 1 9.2968 11.0114 -8.2816 26 1 7.2097 10.0478 -9.0537 27 6 8.6403 6.1410 -4.5312 28 6 8.4380 5.3926 -3.3883 29 6 5.6321 1.0573 -1.2500 30 7 3.4644 -0.7243 -0.0045 31 8 2.3028 -1.0736 0.0004 32 1 -0.3634 0.0002 -1.0276 33 1 -0.3635 -0.8900 0.5137 34 1 -0.3634 0.8900 0.5139 35 1 5.0417 1.2679 2.1391 36 1 5.9033 0.0005 1.2342 37 1 6.6346 2.9643 1.2542 38 1 7.4770 1.6885 2.1663 39 1 8.0941 0.5451 0.0799 40 1 8.6099 2.2485 -0.0189 41 1 8.6496 3.9281 -1.2142 42 1 9.4568 2.5375 -1.9776 43 1 9.8774 2.4997 -4.3635 44 1 10.2354 3.8218 -6.4081 45 1 9.6793 8.3558 -9.8113 46 1 8.2955 7.1634 -4.5759 47 1 7.9335 5.8300 -2.5394 48 1 5.0920 1.3833 -2.1387 49 1 5.8056 -0.0177 -1.2991 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075610195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:02 Heat of formation + Delta-G solvation = 29.111295 kcal Electronic energy + Delta-G solvation = -32440.746768 eV Core-core repulsion = 27950.876973 eV Total energy + Delta-G solvation = -4489.869795 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 371.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.97027 -40.42408 -38.96385 -37.92767 -36.43674 -36.14994 -34.40671 -32.87204 -32.43310 -31.77674 -30.90546 -30.09659 -29.23087 -27.05882 -25.60689 -25.31430 -24.54365 -23.70052 -22.36399 -21.92116 -21.07018 -20.24955 -19.05205 -18.50705 -17.92922 -17.85674 -17.21251 -16.91393 -16.02674 -15.74714 -15.24677 -15.05277 -14.74361 -14.55445 -14.45311 -14.37518 -14.13873 -13.94991 -13.71627 -13.59472 -13.57188 -13.33958 -13.21538 -12.92049 -12.65388 -12.60794 -12.44247 -12.09658 -11.87818 -11.76584 -11.51449 -11.46688 -11.39767 -11.31379 -11.22475 -11.05273 -10.80661 -10.68683 -10.55241 -10.38254 -10.22833 -9.67756 -9.27173 -8.83629 -8.77942 -8.09642 -7.11164 -6.40244 -3.98635 0.76485 1.82019 2.28288 2.30733 2.43290 2.71305 2.81895 3.15501 3.17344 3.22762 3.26495 3.64807 4.00978 4.23614 4.31720 4.40435 4.50076 4.57282 4.65721 4.75304 4.77937 4.84999 4.93079 5.02461 5.08336 5.12921 5.18175 5.26551 5.27931 5.35440 5.36569 5.37694 5.42068 5.50216 5.53447 5.64707 5.65824 5.71272 5.77597 5.86093 5.89925 6.26323 6.29458 6.47127 6.75387 6.96582 7.10547 7.27175 7.31214 7.42266 7.50203 7.80073 7.89246 8.05323 8.25940 9.05671 9.76606 10.78039 Molecular weight = 371.17amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.001740 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.533159 B =16084.444985 C =17380.718120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.177 3.823 3 N -0.480 5.480 4 C 0.182 3.818 5 C -0.011 4.011 6 H 0.106 0.894 7 C -0.110 4.110 8 C -0.133 4.133 9 C 0.105 3.895 10 N -0.621 5.621 11 C 0.513 3.487 12 O -0.516 6.516 13 C -0.077 4.077 14 C -0.171 4.171 15 C -0.059 4.059 16 C -0.191 4.191 17 C 0.157 3.843 18 O -0.179 6.179 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.232 4.232 28 C -0.056 4.056 29 C 0.123 3.877 30 N -0.379 5.379 31 O 0.076 5.924 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.269 0.731 46 H 0.126 0.874 47 H 0.103 0.897 48 H 0.096 0.904 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.491 -16.768 25.177 32.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.043 4.043 3 N -0.214 5.214 4 C -0.091 4.091 5 C -0.032 4.032 6 H 0.124 0.876 7 C -0.148 4.148 8 C -0.172 4.172 9 C -0.018 4.018 10 N -0.357 5.357 11 C 0.302 3.698 12 O -0.390 6.390 13 C -0.117 4.117 14 C -0.172 4.172 15 C -0.078 4.078 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.082 6.082 19 C -0.466 4.466 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.499 5.499 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.251 4.251 28 C -0.074 4.074 29 C -0.001 4.001 30 N -0.086 5.086 31 O 0.017 5.983 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.126 0.874 44 H 0.135 0.865 45 H 0.079 0.921 46 H 0.144 0.856 47 H 0.121 0.879 48 H 0.114 0.886 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.890 -16.720 24.143 31.683 hybrid contribution -0.725 0.757 0.091 1.052 sum -12.615 -15.963 24.235 31.643 Atomic orbital electron populations 1.20415 0.80125 1.05892 1.05635 1.28870 0.98989 0.80719 0.95741 1.71935 1.00248 1.28933 1.20271 1.25598 0.94897 0.88167 1.00452 1.19969 0.86775 0.98996 0.97463 0.87550 1.21565 0.96159 1.00968 0.96125 1.22003 0.96110 1.00805 0.98259 1.21886 0.93735 1.02304 0.83898 1.48162 1.19837 1.48470 1.19265 1.21138 0.88650 0.78141 0.81871 1.90747 1.56148 1.61499 1.30573 1.20435 0.93975 0.98709 0.98547 1.18643 1.08233 0.94867 0.95503 1.20394 0.97438 0.97740 0.92211 1.20154 1.08852 0.92793 0.99254 1.19382 0.92159 0.90911 0.87236 1.83976 1.64638 1.27343 1.32277 1.21378 1.35611 0.89555 1.00071 0.89035 1.25286 0.97107 0.99948 0.94270 1.70051 1.39898 1.37463 1.02446 0.85648 0.78669 0.80321 0.78786 1.19113 1.20186 1.20157 1.21106 1.08140 1.01545 0.94353 1.20500 0.96892 0.93257 0.96784 1.21428 0.84463 0.96859 0.97323 1.74603 0.97313 1.15602 1.21060 1.85298 1.11479 1.35790 1.65731 0.87874 0.88375 0.87657 0.91295 0.90878 0.90803 0.89922 0.91114 0.88863 0.88922 0.88937 0.87412 0.86547 0.92133 0.85583 0.87856 0.88582 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.16 10.51 36.00 0.38 0.22 16 2 C 0.18 1.38 8.51 -13.06 -0.11 1.27 16 3 N -0.48 -5.14 11.55 -9.88 -0.11 -5.25 16 4 C 0.18 1.98 6.73 -156.37 -1.05 0.93 16 5 C -0.01 -0.11 2.81 -91.65 -0.26 -0.36 16 6 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 7 C -0.11 -0.80 5.15 -26.69 -0.14 -0.94 16 8 C -0.13 -0.79 6.10 -26.38 -0.16 -0.95 16 9 C 0.10 0.73 6.37 -3.49 -0.02 0.71 16 10 N -0.62 -6.81 2.97 -172.51 -0.51 -7.32 16 11 C 0.51 7.46 7.69 -10.99 -0.08 7.37 16 12 O -0.52 -10.14 15.45 5.56 0.09 -10.05 16 13 C -0.08 -0.98 4.17 -29.03 -0.12 -1.11 16 14 C -0.17 -3.05 4.38 -104.58 -0.46 -3.51 16 15 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 16 C -0.19 -4.28 9.99 -39.39 -0.39 -4.67 16 17 C 0.16 3.98 6.65 -39.10 -0.26 3.72 16 18 O -0.18 -5.29 9.76 0.04 0.00 -5.29 16 19 C -0.39 -11.25 9.49 30.88 0.29 -10.95 16 20 H 0.09 2.46 5.20 -52.48 -0.27 2.18 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.93 13.67 55.48 0.76 -25.17 16 23 Si 0.94 21.11 29.55 -169.99 -5.02 16.08 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 C -0.23 -5.32 9.17 -39.39 -0.36 -5.68 16 28 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 29 C 0.12 1.40 5.70 -3.71 -0.02 1.37 16 30 N -0.38 -4.13 12.16 30.89 0.38 -3.75 16 31 O 0.08 0.70 11.31 18.11 0.20 0.90 16 32 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 34 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.53 5.93 -51.93 -0.31 0.22 16 41 H 0.09 0.95 7.65 -51.93 -0.40 0.55 16 42 H 0.09 0.94 7.87 -51.93 -0.41 0.54 16 43 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.12 2.51 8.06 -52.49 -0.42 2.08 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 47 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 48 H 0.10 1.35 7.00 -51.93 -0.36 0.98 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 409.22 15.07 6.17 6.17 Total: -1.00 -37.48 409.22 -8.37 -45.84 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.68 Total: 2.44 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -3.63 Total: -14.60 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.51 Total: -41.49 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.29 Total: -14.44 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.48 -8.37 -45.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075610195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.956 kcal (2) G-P(sol) polarization free energy of solvation -37.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds