Wall clock time and date at job start Tue Mar 31 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47314 * 2 1 4 4 N 1.46503 * 109.47044 * 119.99923 * 2 1 3 5 5 C 1.39666 * 120.00307 * 275.00105 * 4 2 1 6 6 C 1.38992 * 120.03415 * 0.02562 * 5 4 2 7 7 C 1.38136 * 120.06522 * 180.02562 * 6 5 4 8 8 C 1.38183 * 120.14684 * 0.23796 * 7 6 5 9 9 C 1.38925 * 120.07463 * 359.48336 * 8 7 6 10 10 N 1.39853 * 120.03604 * 180.25629 * 9 8 7 11 11 C 1.34781 * 120.00336 * 213.33978 * 10 9 8 12 12 O 1.21624 * 119.99798 * 5.37643 * 11 10 9 13 13 C 1.47351 * 120.00162 * 185.37324 * 11 10 9 14 14 C 1.47028 * 127.19347 * 180.02562 * 13 11 10 15 15 C 1.34169 * 105.95735 * 179.97438 * 14 13 11 16 16 O 1.34218 * 109.12810 * 0.02562 * 15 14 13 17 17 C 1.33660 * 110.90876 * 359.72202 * 16 15 14 18 18 C 1.38757 * 120.04259 * 180.02562 * 5 4 2 19 19 C 1.50702 * 109.47465 * 240.00012 * 2 1 3 20 20 O 1.21275 * 120.00301 * 246.81284 * 19 2 1 21 21 N 1.34777 * 119.99573 * 66.80588 * 19 2 1 22 22 C 1.46501 * 120.00495 * 4.50592 * 21 19 2 23 23 C 1.46508 * 119.99851 * 184.50435 * 21 19 2 24 24 C 1.50699 * 109.47247 * 90.00006 * 23 21 19 25 25 H 1.08006 * 119.99987 * 0.02562 * 24 23 21 26 26 C 1.37868 * 120.00133 * 180.02562 * 24 23 21 27 27 N 1.31517 * 119.99872 * 179.97438 * 26 24 23 28 28 Si 1.86801 * 120.00118 * 0.02562 * 26 24 23 29 29 H 1.48493 * 109.47130 * 90.00000 * 28 26 24 30 30 H 1.48503 * 109.47340 * 210.00338 * 28 26 24 31 31 H 1.48500 * 109.46861 * 329.99801 * 28 26 24 32 32 H 1.08999 * 109.47054 * 188.74637 * 1 2 3 33 33 H 1.08996 * 109.47162 * 308.74984 * 1 2 3 34 34 H 1.09004 * 109.46770 * 68.74864 * 1 2 3 35 35 H 0.96997 * 119.99434 * 95.00195 * 4 2 1 36 36 H 1.07998 * 119.97110 * 0.02562 * 6 5 4 37 37 H 1.08001 * 119.92638 * 179.97438 * 7 6 5 38 38 H 1.07998 * 119.96687 * 179.74672 * 8 7 6 39 39 H 0.97000 * 120.00086 * 33.34428 * 10 9 8 40 40 H 1.08001 * 127.02130 * 0.03111 * 14 13 11 41 41 H 1.07995 * 125.43946 * 179.97438 * 15 14 13 42 42 H 1.08000 * 125.80541 * 180.30870 * 17 16 15 43 43 H 1.08005 * 120.06929 * 359.97438 * 18 5 4 44 44 H 1.08997 * 109.47173 * 87.07217 * 22 21 19 45 45 H 1.09001 * 109.47181 * 207.07554 * 22 21 19 46 46 H 1.08998 * 109.46820 * 327.07566 * 22 21 19 47 47 H 1.08998 * 109.46971 * 209.99962 * 23 21 19 48 48 H 1.08999 * 109.46900 * 329.99783 * 23 21 19 49 49 H 0.97002 * 119.99491 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1517 0.0061 2.3993 6 6 1.8208 1.3546 2.4627 7 6 1.9530 2.0444 3.6522 8 6 2.4189 1.3980 4.7812 9 6 2.7459 0.0489 4.7260 10 7 3.2122 -0.6057 5.8705 11 6 4.1167 -1.5986 5.7576 12 8 4.6005 -1.8600 4.6727 13 6 4.5195 -2.3673 6.9484 14 6 5.4856 -3.4741 7.0070 15 6 5.5278 -3.8592 8.2915 16 8 4.6860 -3.0971 9.0071 17 6 4.0782 -2.1970 8.2281 18 6 2.6146 -0.6471 3.5327 19 6 2.0324 -0.7104 -1.2305 20 8 2.6245 -1.7634 -1.1235 21 7 1.8236 -0.1755 -2.4498 22 6 1.1966 1.1427 -2.5739 23 6 2.2238 -0.9123 -3.6512 24 6 1.0807 -1.7788 -4.1132 25 1 0.1490 -1.7802 -3.5668 26 6 1.2241 -2.5697 -5.2333 27 7 0.2266 -3.3262 -5.6362 28 14 2.8357 -2.5678 -6.1779 29 1 3.7330 -3.6154 -5.6280 30 1 2.5693 -2.8471 -7.6120 31 1 3.4858 -1.2394 -6.0449 32 1 -0.3633 -1.0157 0.1563 33 1 -0.3633 0.6432 0.8014 34 1 -0.3633 0.3725 -0.9578 35 1 2.2490 -1.6317 1.1526 36 1 1.4601 1.8636 1.5812 37 1 1.6957 3.0922 3.6988 38 1 2.5250 1.9412 5.7086 39 1 2.8847 -0.3453 6.7456 40 1 6.0472 -3.8912 6.1842 41 1 6.1406 -4.6559 8.6866 42 1 3.3584 -1.4614 8.5556 43 1 2.8720 -1.6950 3.4862 44 1 1.9623 1.9162 -2.5163 45 1 0.6820 1.2115 -3.5324 46 1 0.4788 1.2811 -1.7654 47 1 2.4866 -0.2067 -4.4394 48 1 3.0857 -1.5392 -3.4227 49 1 0.3277 -3.8830 -6.4241 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079030280.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:39 Heat of formation + Delta-G solvation = 0.275813 kcal Electronic energy + Delta-G solvation = -32427.544241 eV Core-core repulsion = 27936.424046 eV Total energy + Delta-G solvation = -4491.120195 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 371.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.01033 -40.61319 -39.70613 -38.53682 -36.07467 -35.07749 -34.47732 -33.30332 -32.66209 -31.54089 -30.71026 -29.28785 -28.55235 -27.91965 -26.21918 -24.69787 -24.04678 -22.74766 -22.37616 -21.93521 -21.07103 -20.33216 -19.04826 -18.66548 -17.91702 -16.98323 -16.77510 -16.62437 -16.50831 -16.24488 -16.03173 -15.42197 -15.27072 -14.93229 -14.78300 -14.58988 -14.12546 -14.07164 -13.86268 -13.54769 -13.40520 -13.34957 -13.06129 -12.93085 -12.79027 -12.45331 -12.31624 -12.14799 -11.85381 -11.77658 -11.59115 -11.38827 -11.24823 -10.84034 -10.77635 -10.54054 -10.29749 -10.17643 -10.16564 -9.89088 -9.57409 -9.31549 -9.08744 -8.61465 -8.31437 -7.77982 -7.34913 -6.11555 -4.10874 0.77611 1.36986 1.59190 1.71130 2.41950 2.68576 2.98327 3.18606 3.27354 3.31861 3.35431 3.37573 3.85502 3.95215 4.08921 4.17323 4.37626 4.55560 4.81368 4.87637 5.02955 5.05865 5.14044 5.20876 5.21903 5.23732 5.31429 5.37119 5.41538 5.45426 5.57624 5.66643 5.76830 5.80145 5.82101 5.86401 6.08261 6.17276 6.23762 6.35351 6.39034 6.45962 6.51164 6.62815 6.84503 6.91324 7.11189 7.24125 7.41460 7.57223 7.82209 7.87296 8.15394 8.42584 8.81239 8.91636 9.48444 11.01539 Molecular weight = 371.17amu Principal moments of inertia in cm(-1) A = 0.012583 B = 0.001836 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.664425 B =15247.758493 C =16888.153039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 H 0.098 0.902 4 N -0.722 5.722 5 C 0.247 3.753 6 C -0.217 4.217 7 C -0.052 4.052 8 C -0.212 4.212 9 C 0.190 3.810 10 N -0.670 5.670 11 C 0.583 3.417 12 O -0.504 6.504 13 C -0.234 4.234 14 C -0.163 4.163 15 C -0.039 4.039 16 O -0.173 6.173 17 C 0.021 3.979 18 C -0.198 4.198 19 C 0.505 3.495 20 O -0.536 6.536 21 N -0.592 5.592 22 C 0.066 3.934 23 C 0.215 3.785 24 C -0.531 4.531 25 H 0.075 0.925 26 C 0.073 3.927 27 N -0.896 5.896 28 Si 0.877 3.123 29 H -0.273 1.273 30 H -0.284 1.284 31 H -0.266 1.266 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.406 0.594 40 H 0.162 0.838 41 H 0.211 0.789 42 H 0.212 0.788 43 H 0.133 0.867 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.032 0.968 48 H 0.038 0.962 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.381 10.419 30.030 32.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.022 3.978 3 H 0.115 0.885 4 N -0.351 5.351 5 C 0.141 3.859 6 C -0.240 4.240 7 C -0.071 4.071 8 C -0.234 4.234 9 C 0.096 3.904 10 N -0.315 5.315 11 C 0.372 3.628 12 O -0.379 6.379 13 C -0.239 4.239 14 C -0.182 4.182 15 C -0.104 4.104 16 O -0.068 6.068 17 C -0.049 4.049 18 C -0.223 4.223 19 C 0.291 3.709 20 O -0.413 6.413 21 N -0.323 5.323 22 C -0.077 4.077 23 C 0.094 3.906 24 C -0.569 4.569 25 H 0.093 0.907 26 C -0.130 4.130 27 N -0.534 5.534 28 Si 0.703 3.297 29 H -0.199 1.199 30 H -0.210 1.210 31 H -0.191 1.191 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.249 0.751 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.242 0.758 40 H 0.180 0.820 41 H 0.228 0.772 42 H 0.228 0.772 43 H 0.150 0.850 44 H 0.066 0.934 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.050 0.950 48 H 0.056 0.944 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.923 9.525 29.269 31.171 hybrid contribution 0.659 -0.312 -0.471 0.869 sum 5.582 9.213 28.798 30.747 Atomic orbital electron populations 1.22411 0.93524 1.03799 1.03199 1.20748 0.95250 0.97044 0.84708 0.88456 1.44576 1.71552 1.13262 1.05691 1.17595 0.91559 0.91122 0.85599 1.20684 1.11003 0.93150 0.99178 1.20599 0.95967 0.98974 0.91553 1.20503 1.10823 0.92265 0.99805 1.17269 0.96009 0.90858 0.86257 1.43287 1.43116 1.36083 1.08998 1.17369 0.78363 0.79218 0.87878 1.90878 1.53067 1.66175 1.27736 1.21467 1.05640 1.03162 0.93606 1.22842 1.00380 0.97280 0.97700 1.24002 0.97015 0.98763 0.90662 1.83805 1.45694 1.38147 1.39182 1.24448 0.98026 0.93759 0.88675 1.20447 1.09168 1.01151 0.91494 1.20281 0.80305 0.85819 0.84521 1.90664 1.41803 1.22927 1.85921 1.47741 1.59438 1.18634 1.06525 1.22035 0.97610 0.84120 1.03983 1.19714 0.97182 0.92182 0.81512 1.21306 0.99827 1.24249 1.11530 0.90696 1.24855 0.96479 0.94702 0.96967 1.69896 1.31388 1.26916 1.25223 0.86844 0.84306 0.79227 0.79283 1.19891 1.21028 1.19059 0.91362 0.91443 0.89897 0.75051 0.85926 0.85872 0.86403 0.75813 0.82030 0.77249 0.77189 0.84960 0.93445 0.90184 0.90923 0.95044 0.94420 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 8.99 37.16 0.33 -1.94 16 2 C 0.13 2.00 1.86 -69.08 -0.13 1.87 16 3 H 0.10 1.26 6.14 -51.93 -0.32 0.94 16 4 N -0.72 -11.26 5.16 -53.31 -0.28 -11.53 16 5 C 0.25 3.48 6.63 -83.82 -0.56 2.92 16 6 C -0.22 -2.55 8.92 -39.34 -0.35 -2.90 16 7 C -0.05 -0.51 10.03 -39.64 -0.40 -0.91 16 8 C -0.21 -2.06 9.96 -39.35 -0.39 -2.45 16 9 C 0.19 2.21 6.28 -83.75 -0.53 1.68 16 10 N -0.67 -6.06 5.33 -10.87 -0.06 -6.12 16 11 C 0.58 6.75 7.55 -12.55 -0.09 6.66 16 12 O -0.50 -8.15 14.65 5.26 0.08 -8.07 16 13 C -0.23 -2.08 6.31 -103.28 -0.65 -2.73 16 14 C -0.16 -1.37 11.01 -37.45 -0.41 -1.78 16 15 C -0.04 -0.23 12.03 29.30 0.35 0.13 16 16 O -0.17 -1.10 10.52 7.62 0.08 -1.02 16 17 C 0.02 0.12 11.61 30.08 0.35 0.47 16 18 C -0.20 -2.81 8.50 -39.19 -0.33 -3.15 16 19 C 0.51 10.28 7.04 -10.98 -0.08 10.20 16 20 O -0.54 -13.22 15.37 5.56 0.09 -13.13 16 21 N -0.59 -12.00 2.86 -182.95 -0.52 -12.52 16 22 C 0.07 0.97 9.80 59.85 0.59 1.55 16 23 C 0.21 5.25 4.25 -5.19 -0.02 5.23 16 24 C -0.53 -15.14 9.94 -34.44 -0.34 -15.48 16 25 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 26 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 27 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 28 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 29 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 30 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 31 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.74 7.64 -51.93 -0.40 0.34 16 34 H 0.08 1.08 5.30 -51.93 -0.28 0.80 16 35 H 0.41 7.14 7.74 -40.82 -0.32 6.82 16 36 H 0.12 1.27 5.98 -52.49 -0.31 0.96 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.41 1.93 7.80 -40.82 -0.32 1.61 16 40 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.21 0.44 8.06 -52.49 -0.42 0.02 16 42 H 0.21 0.21 7.48 -52.49 -0.39 -0.18 16 43 H 0.13 2.12 6.40 -52.48 -0.34 1.78 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 46 H 0.07 0.87 4.18 -51.93 -0.22 0.65 16 47 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 48 H 0.04 1.00 6.79 -51.93 -0.35 0.64 16 49 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 407.78 15.07 6.15 6.15 Total: -1.00 -38.84 407.78 -7.28 -46.11 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.15 Total: 8.48 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -2.76 Total: 1.39 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.08 Total: -56.94 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.24 Total: -22.22 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.84 -7.28 -46.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079030280.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.390 kcal (2) G-P(sol) polarization free energy of solvation -38.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds