Wall clock time and date at job start Tue Mar 31 2020 05:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 S 1.65603 * 120.00000 * 2 1 4 4 O 1.42105 * 106.40251 * 178.81637 * 3 2 1 5 5 O 1.42100 * 106.39992 * 311.73171 * 3 2 1 6 6 C 1.76194 * 107.21846 * 65.27565 * 3 2 1 7 7 C 1.37854 * 119.94144 * 114.72816 * 6 3 2 8 8 C 1.39635 * 119.87912 * 179.76741 * 7 6 3 9 9 C 1.47724 * 120.11841 * 180.24844 * 8 7 6 10 10 O 1.21573 * 119.99896 * 36.39111 * 9 8 7 11 11 N 1.34777 * 120.00253 * 216.38933 * 9 8 7 12 12 C 1.46962 * 120.59252 * 5.48836 * 11 9 8 13 13 C 1.53809 * 108.39762 * 124.75834 * 12 11 9 14 14 N 1.46967 * 108.57926 * 49.64181 * 13 12 11 15 15 C 1.36936 * 120.59561 * 124.62343 * 14 13 12 16 16 H 1.07999 * 119.99596 * 205.05950 * 15 14 13 17 17 C 1.38801 * 120.00089 * 25.06241 * 15 14 13 18 18 N 1.31618 * 120.00193 * 16.44222 * 17 15 14 19 19 Si 1.86804 * 119.99878 * 196.44310 * 17 15 14 20 20 H 1.48496 * 109.46948 * 60.00030 * 19 17 15 21 21 H 1.48508 * 109.47135 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47037 * 299.99713 * 19 17 15 23 23 C 1.46965 * 118.80828 * 304.64352 * 14 13 12 24 24 C 1.46961 * 120.59529 * 185.77242 * 11 9 8 25 25 C 1.39674 * 119.76284 * 0.50665 * 8 7 6 26 26 C 1.37809 * 119.87999 * 359.74227 * 25 8 7 27 27 C 1.38637 * 119.93839 * 294.99766 * 6 3 2 28 28 F 1.35093 * 119.88316 * 359.95907 * 27 6 3 29 29 H 1.08996 * 109.46786 * 179.72573 * 1 2 3 30 30 H 1.09007 * 109.46966 * 299.72703 * 1 2 3 31 31 H 1.08998 * 109.47013 * 59.72768 * 1 2 3 32 32 H 0.96998 * 120.00528 * 180.27440 * 2 1 3 33 33 H 1.07997 * 120.05947 * 0.02562 * 7 6 3 34 34 H 1.09000 * 109.61187 * 244.54557 * 12 11 9 35 35 H 1.09004 * 109.61557 * 5.05280 * 12 11 9 36 36 H 1.09000 * 109.74487 * 289.84739 * 13 12 11 37 37 H 1.09007 * 109.53428 * 169.29997 * 13 12 11 38 38 H 0.96999 * 120.00211 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.61073 * 295.48768 * 23 14 13 40 40 H 1.08996 * 109.75351 * 175.05625 * 23 14 13 41 41 H 1.09002 * 109.61026 * 354.94266 * 24 11 9 42 42 H 1.08999 * 109.60948 * 115.28391 * 24 11 9 43 43 H 1.07998 * 120.05800 * 179.72432 * 25 8 7 44 44 H 1.08001 * 119.94111 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 3.6739 1.1002 0.0282 5 8 1.7078 2.2353 -1.0173 6 6 1.9442 2.2378 1.5287 7 6 2.9537 2.4413 2.4451 8 6 2.6768 3.0827 3.6541 9 6 3.7557 3.3083 4.6376 10 8 4.8783 3.5783 4.2571 11 7 3.4955 3.2150 5.9568 12 6 2.1761 2.7729 6.4294 13 6 2.3744 1.5704 7.3677 14 7 3.4030 1.9149 8.3593 15 6 3.1383 1.8210 9.6995 16 1 3.6928 2.4243 10.4030 17 6 2.1574 0.9504 10.1539 18 7 1.7106 -0.0058 9.3675 19 14 1.4713 1.1359 11.8815 20 1 0.8548 2.4788 12.0276 21 1 0.4434 0.0911 12.1207 22 1 2.5700 0.9854 12.8691 23 6 4.7207 2.3623 7.8866 24 6 4.5241 3.5595 6.9482 25 6 1.3749 3.5052 3.9326 26 6 0.3722 3.2922 3.0116 27 6 0.6538 2.6594 1.8101 28 9 -0.3328 2.4534 0.9105 29 1 -0.3633 -1.0276 -0.0049 30 1 -0.3633 0.5096 0.8925 31 1 -0.3633 0.5180 -0.8875 32 1 1.9500 -0.8400 -0.0040 33 1 3.9577 2.1090 2.2266 34 1 1.6897 3.5854 6.9693 35 1 1.5626 2.4774 5.5782 36 1 2.6973 0.7032 6.7917 37 1 1.4366 1.3464 7.8763 38 1 1.0248 -0.6140 9.6849 39 1 5.2107 1.5516 7.3475 40 1 5.3351 2.6605 8.7362 41 1 5.4619 3.7835 6.4398 42 1 4.2025 4.4285 7.5222 43 1 1.1546 3.9978 4.8681 44 1 -0.6349 3.6182 3.2261 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079054128.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:49 Heat of formation + Delta-G solvation = -68.790952 kcal Electronic energy + Delta-G solvation = -32406.787533 eV Core-core repulsion = 27788.822930 eV Total energy + Delta-G solvation = -4617.964603 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 371.115 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -49.76649 -40.54526 -38.50315 -37.48748 -36.92318 -36.14892 -35.34150 -34.14841 -32.31911 -31.64242 -30.84914 -30.08899 -27.17957 -26.36547 -24.61100 -24.24497 -23.33645 -22.73534 -21.08616 -19.96026 -19.37378 -18.39660 -18.02123 -17.92886 -17.12258 -16.90074 -16.67344 -16.10973 -15.87334 -15.61409 -15.04938 -14.96582 -14.84349 -14.55469 -14.33277 -13.96817 -13.96203 -13.79513 -13.41444 -13.39221 -13.24339 -12.99449 -12.79807 -12.47612 -12.38598 -12.34356 -12.27400 -11.87500 -11.70404 -11.42176 -11.21001 -10.94573 -10.85612 -10.62385 -10.34536 -10.23175 -10.06747 -9.97724 -9.87171 -9.62055 -9.20886 -8.72122 -8.42894 -6.86997 -5.94921 -3.38655 -0.04253 0.20086 0.57020 2.39600 2.70899 3.02738 3.27837 3.30654 3.34336 3.35376 3.38654 3.48187 3.96327 4.27590 4.34977 4.41974 4.54956 4.67034 4.80620 5.03184 5.11286 5.12618 5.21807 5.28644 5.38717 5.41087 5.44044 5.50232 5.60699 5.70129 5.74010 5.81474 5.90924 6.03931 6.17967 6.22244 6.28911 6.54971 6.66094 6.77816 7.06442 7.37635 7.58910 7.67358 8.23585 8.26937 9.01284 9.63792 10.18257 11.12032 Molecular weight = 371.11amu Principal moments of inertia in cm(-1) A = 0.014479 B = 0.002609 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.304693 B =10728.734588 C =11512.224448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -1.116 6.116 3 S 2.701 3.299 4 O -0.949 6.949 5 O -0.945 6.945 6 C -0.722 4.722 7 C 0.057 3.943 8 C -0.147 4.147 9 C 0.552 3.448 10 O -0.544 6.544 11 N -0.587 5.587 12 C 0.064 3.936 13 C 0.153 3.847 14 N -0.592 5.592 15 C -0.253 4.253 16 H 0.070 0.930 17 C 0.000 4.000 18 N -0.906 5.906 19 Si 0.907 3.093 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.131 3.869 24 C 0.096 3.904 25 C -0.006 4.006 26 C -0.174 4.174 27 C 0.205 3.795 28 F -0.117 7.117 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.422 0.578 33 H 0.163 0.837 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.112 0.888 38 H 0.256 0.744 39 H 0.026 0.974 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.157 0.843 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.139 2.760 -15.999 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.877 5.877 3 S 2.787 3.213 4 O -0.939 6.939 5 O -0.935 6.935 6 C -0.807 4.807 7 C 0.037 3.963 8 C -0.151 4.151 9 C 0.339 3.661 10 O -0.423 6.423 11 N -0.319 5.319 12 C -0.060 4.060 13 C 0.026 3.974 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.088 0.912 17 C -0.198 4.198 18 N -0.551 5.551 19 Si 0.737 3.263 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.208 1.208 23 C 0.004 3.996 24 C -0.028 4.028 25 C -0.025 4.025 26 C -0.193 4.193 27 C 0.184 3.816 28 F -0.095 7.095 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.256 0.744 33 H 0.180 0.820 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.041 0.959 37 H 0.130 0.870 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.174 0.826 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.311 3.238 -16.764 17.881 hybrid contribution -0.892 -0.355 1.593 1.860 sum -6.203 2.883 -15.171 16.641 Atomic orbital electron populations 1.21827 0.78117 1.04480 1.02773 1.55261 1.16429 1.24283 1.91756 1.01886 0.72999 0.72950 0.73490 1.93625 1.30340 1.83221 1.86694 1.93624 1.78512 1.68255 1.53083 1.30917 0.99447 1.23916 1.26439 1.20883 0.98485 0.88091 0.88795 1.20193 0.94635 1.03897 0.96351 1.18053 0.87428 0.78190 0.82380 1.90775 1.22316 1.49845 1.79370 1.48000 1.15318 1.64040 1.04498 1.23289 0.82953 1.00688 0.99033 1.21426 0.96565 0.90353 0.89045 1.44033 1.07030 1.77747 1.02647 1.19224 1.18802 1.17568 0.82612 0.91228 1.25006 1.01444 0.95301 0.98025 1.69950 1.31802 1.16860 1.36453 0.86291 0.78746 0.77269 0.84011 1.20978 1.21550 1.20827 1.21297 0.89119 0.93514 0.95691 1.22286 0.91212 0.99230 0.90069 1.21812 0.90727 0.91985 0.97980 1.21194 1.01880 1.03300 0.92958 1.17207 0.83250 0.94042 0.87088 1.91569 1.60334 1.91645 1.65993 0.89785 0.91495 0.91038 0.74369 0.81972 0.91224 0.90360 0.95863 0.87000 0.93359 0.95642 0.91306 0.89660 0.91513 0.82602 0.82812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 9.92 59.84 0.59 1.09 16 2 N -1.12 -8.90 6.19 -16.64 -0.10 -9.00 16 3 S 2.70 30.70 5.48 -107.50 -0.59 30.11 16 4 O -0.95 -13.04 16.96 -57.17 -0.97 -14.01 16 5 O -0.95 -12.97 17.13 -57.17 -0.98 -13.95 16 6 C -0.72 -8.51 5.89 -39.57 -0.23 -8.74 16 7 C 0.06 0.77 9.11 -39.20 -0.36 0.41 16 8 C -0.15 -2.04 5.29 -104.96 -0.55 -2.59 16 9 C 0.55 9.30 7.37 -12.38 -0.09 9.21 16 10 O -0.54 -10.64 16.27 5.30 0.09 -10.56 16 11 N -0.59 -9.90 2.94 -173.37 -0.51 -10.41 16 12 C 0.06 1.04 5.01 -3.37 -0.02 1.02 16 13 C 0.15 3.26 5.56 -3.37 -0.02 3.24 16 14 N -0.59 -13.66 2.98 -171.76 -0.51 -14.17 16 15 C -0.25 -6.41 9.62 -15.06 -0.14 -6.55 16 16 H 0.07 1.73 7.87 -52.49 -0.41 1.31 16 17 C 0.00 0.01 4.97 -17.44 -0.09 -0.08 16 18 N -0.91 -24.29 10.89 55.49 0.60 -23.69 16 19 Si 0.91 20.27 29.58 -169.99 -5.03 15.24 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 23 C 0.13 2.59 6.67 -3.59 -0.02 2.57 16 24 C 0.10 1.64 6.60 -3.60 -0.02 1.62 16 25 C -0.01 -0.07 7.34 -39.20 -0.29 -0.36 16 26 C -0.17 -1.65 10.01 -39.57 -0.40 -2.04 16 27 C 0.21 2.18 6.68 -39.27 -0.26 1.92 16 28 F -0.12 -1.15 12.92 2.25 0.03 -1.12 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.45 5.41 -51.93 -0.28 0.17 16 31 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.42 2.48 8.96 -34.47 -0.31 2.17 16 33 H 0.16 2.21 7.28 -52.49 -0.38 1.83 16 34 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 35 H 0.08 1.06 4.37 -51.93 -0.23 0.84 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.11 2.64 5.69 -51.92 -0.30 2.34 16 38 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 41 H 0.09 1.43 6.99 -51.93 -0.36 1.07 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.16 1.48 6.12 -52.49 -0.32 1.16 16 44 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -33.58 368.45 -9.42 -42.99 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.09 Total: 2.31 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.90 Total: 0.71 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.52 Total: -57.27 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -1.86 Total: -38.53 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.03 Total: -1.12 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Atomic # 16 Polarization: 30.70 SS G_CDS: -0.59 Total: 30.11 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.58 -9.42 -42.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079054128.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.798 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds