Wall clock time and date at job start Tue Mar 31 2020 06:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99888 * 2 1 4 4 H 1.48504 * 109.46599 * 269.99341 * 3 2 1 5 5 H 1.48493 * 109.47392 * 29.99490 * 3 2 1 6 6 H 1.48500 * 109.47270 * 149.99863 * 3 2 1 7 7 C 1.38730 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99594 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00285 * 359.97438 * 7 2 1 10 10 C 1.76193 * 100.00354 * 185.12047 * 9 7 2 11 11 C 1.39226 * 120.02336 * 265.53528 * 10 9 7 12 12 C 1.38134 * 120.20226 * 179.97438 * 11 10 9 13 13 C 1.38083 * 120.24607 * 359.67536 * 12 11 10 14 14 C 1.39639 * 120.03561 * 0.60151 * 13 12 11 15 15 C 1.47859 * 120.10036 * 179.69840 * 14 13 12 16 16 O 1.21556 * 120.00065 * 179.72542 * 15 14 13 17 17 N 1.34777 * 120.00002 * 359.72196 * 15 14 13 18 18 C 1.46499 * 119.99989 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.46908 * 180.02562 * 18 17 15 20 20 C 1.50700 * 109.46608 * 179.97438 * 19 18 17 21 21 C 1.38237 * 120.00193 * 90.00266 * 20 19 18 22 22 C 1.38236 * 120.00166 * 179.97438 * 21 20 19 23 23 C 1.38241 * 119.99690 * 0.02562 * 22 21 20 24 24 N 1.48019 * 119.99743 * 179.97438 * 23 22 21 25 25 O 1.21798 * 120.00072 * 0.02562 * 24 23 22 26 26 O 1.21801 * 120.00049 * 180.02562 * 24 23 22 27 27 C 1.38233 * 120.00214 * 0.25842 * 23 22 21 28 28 C 1.38233 * 119.99893 * 270.01507 * 20 19 18 29 29 C 1.38835 * 120.02013 * 85.50961 * 10 9 7 30 30 H 0.97002 * 120.00514 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.89268 * 359.97438 * 11 10 9 32 32 H 1.07999 * 119.87188 * 180.02562 * 12 11 10 33 33 H 1.07998 * 119.98440 * 180.29754 * 13 12 11 34 34 H 0.97001 * 119.99659 * 0.02562 * 17 15 14 35 35 H 1.08997 * 109.47326 * 60.00207 * 18 17 15 36 36 H 1.08997 * 109.46870 * 299.99916 * 18 17 15 37 37 H 1.08997 * 109.47117 * 59.99884 * 19 18 17 38 38 H 1.09005 * 109.46983 * 299.99275 * 19 18 17 39 39 H 1.07999 * 119.99943 * 359.97438 * 21 20 19 40 40 H 1.07995 * 120.00171 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.99884 * 179.72626 * 27 23 22 42 42 H 1.08004 * 120.00171 * 0.02562 * 28 20 19 43 43 H 1.07997 * 120.12329 * 0.04312 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0099 -1.2015 0.0005 8 1 3.0899 -1.2014 0.0010 9 16 1.1289 -2.7274 0.0019 10 6 2.4727 -3.8564 0.1570 11 6 3.0361 -4.4292 -0.9801 12 6 4.0900 -5.3144 -0.8628 13 6 4.5963 -5.6321 0.3820 14 6 4.0351 -5.0681 1.5295 15 6 4.5717 -5.4124 2.8636 16 8 4.0851 -4.9165 3.8610 17 7 5.6004 -6.2762 2.9737 18 6 6.1318 -6.6179 4.2955 19 6 7.2864 -7.6097 4.1402 20 6 7.8334 -7.9606 5.4999 21 6 7.3116 -9.0329 6.1991 22 6 7.8137 -9.3551 7.4461 23 6 8.8372 -8.6046 7.9941 24 7 9.3744 -8.9492 9.3296 25 8 8.9150 -9.8943 9.9455 26 8 10.2758 -8.2877 9.8127 27 6 9.3549 -7.5287 7.2975 28 6 8.8566 -7.2100 6.0480 29 6 2.9707 -4.1751 1.4132 30 1 -0.4851 0.8400 -0.0004 31 1 2.6479 -4.1805 -1.9568 32 1 4.5233 -5.7552 -1.7484 33 1 5.4235 -6.3210 0.4684 34 1 5.9889 -6.6717 2.1777 35 1 5.3436 -7.0688 4.8984 36 1 6.4930 -5.7143 4.7865 37 1 8.0744 -7.1584 3.5373 38 1 6.9256 -8.5134 3.6490 39 1 6.5118 -9.6189 5.7711 40 1 7.4058 -10.1926 7.9925 41 1 10.1515 -6.9397 7.7276 42 1 9.2638 -6.3718 5.5020 43 1 2.5355 -3.7326 2.2970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079437362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:44 Heat of formation + Delta-G solvation = 2.758761 kcal Electronic energy + Delta-G solvation = -28056.195950 eV Core-core repulsion = 23774.384538 eV Total energy + Delta-G solvation = -4281.811412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 372.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.58857 -40.42349 -39.93387 -37.98252 -36.96681 -35.98068 -33.66155 -32.55249 -32.04877 -31.27387 -30.64563 -29.67498 -26.66272 -25.61676 -24.36474 -23.84162 -23.11396 -22.26768 -21.86531 -20.54450 -19.85933 -19.06969 -18.44389 -17.92863 -17.45054 -16.78314 -16.47839 -15.95748 -15.81880 -15.46125 -15.36858 -15.19961 -14.89262 -14.52317 -14.36791 -14.08435 -13.99921 -13.67632 -13.47072 -13.01139 -12.69081 -12.58932 -12.48312 -12.25976 -12.00353 -11.78456 -11.72424 -11.59761 -11.53616 -11.22389 -11.19824 -11.12575 -10.76090 -10.10798 -10.03222 -10.00730 -9.87071 -9.38787 -9.21137 -9.08170 -8.68355 -8.10162 -6.76635 -6.33086 -4.07566 -0.68697 0.32503 0.82412 0.95660 1.05799 1.57804 2.59095 2.89105 2.92851 3.15714 3.18677 3.24565 3.40830 3.73463 3.85750 3.92796 4.01167 4.13242 4.19903 4.24944 4.34832 4.54852 4.63941 4.74237 4.88432 4.97828 5.01356 5.03477 5.12921 5.14021 5.18500 5.22172 5.42001 5.43289 5.59133 5.64956 5.66733 5.78626 5.89055 5.97478 6.11745 6.16448 6.48275 6.54477 6.84928 7.09582 7.20934 7.29701 7.52873 8.12575 8.27840 9.12722 10.73624 Molecular weight = 372.10amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.001432 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.243231 B =19543.504181 C =20501.713152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.521 4.521 8 H 0.076 0.924 9 S -0.034 6.034 10 C -0.106 4.106 11 C -0.054 4.054 12 C -0.141 4.141 13 C -0.090 4.090 14 C -0.156 4.156 15 C 0.565 3.435 16 O -0.531 6.531 17 N -0.735 5.735 18 C 0.125 3.875 19 C -0.102 4.102 20 C -0.025 4.025 21 C -0.112 4.112 22 C -0.051 4.051 23 C -0.049 4.049 24 N 0.028 4.972 25 O -0.161 6.161 26 O -0.161 6.161 27 C -0.051 4.051 28 C -0.112 4.112 29 C -0.018 4.018 30 H 0.270 0.730 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.400 0.600 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.602 -20.096 6.536 28.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.669 4.669 8 H 0.094 0.906 9 S 0.201 5.799 10 C -0.217 4.217 11 C -0.075 4.075 12 C -0.161 4.161 13 C -0.109 4.109 14 C -0.161 4.161 15 C 0.354 3.646 16 O -0.408 6.408 17 N -0.389 5.389 18 C 0.002 3.998 19 C -0.139 4.139 20 C -0.026 4.026 21 C -0.131 4.131 22 C -0.070 4.070 23 C -0.132 4.132 24 N 0.548 4.452 25 O -0.376 6.376 26 O -0.376 6.376 27 C -0.070 4.070 28 C -0.131 4.131 29 C -0.040 4.040 30 H 0.080 0.920 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.135 0.865 34 H 0.236 0.764 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.167 0.833 40 H 0.172 0.828 41 H 0.172 0.828 42 H 0.168 0.832 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 16.633 -19.600 6.562 26.531 hybrid contribution 2.292 0.882 0.131 2.459 sum 18.925 -18.718 6.693 27.447 Atomic orbital electron populations 1.69982 1.05899 1.27734 1.46824 1.25004 0.95132 0.99121 0.94285 0.86119 0.79520 0.81225 0.78451 1.20136 1.20611 1.19583 1.22834 0.94870 0.90169 1.58998 0.90611 1.83625 1.04175 0.97150 1.94996 1.22881 1.02952 1.02044 0.93827 1.21987 0.93274 0.93345 0.98905 1.21062 0.98172 0.99903 0.96941 1.21116 0.98720 0.98781 0.92310 1.19825 1.00849 1.03472 0.91954 1.18423 0.78945 0.77976 0.89292 1.90795 1.59067 1.52349 1.38578 1.45838 1.36182 1.47936 1.08939 1.21233 0.95013 0.98158 0.85442 1.20967 0.98746 1.00972 0.93260 1.20181 0.93431 0.93247 0.95762 1.21178 1.00624 0.97779 0.93485 1.21094 0.92335 0.98285 0.95310 1.21176 1.03194 1.02886 0.85938 1.43643 0.99539 0.99550 1.02516 1.94549 1.61942 1.20002 1.61153 1.94552 1.21697 1.50468 1.70930 1.21098 0.98504 0.93550 0.93849 1.21188 0.96858 1.00539 0.94475 1.21965 0.91892 0.91893 0.98230 0.92005 0.85005 0.85810 0.86548 0.76418 0.90936 0.90955 0.89016 0.89010 0.83252 0.82767 0.82762 0.83249 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.07 13.22 55.49 0.73 -24.34 16 2 C 0.07 2.04 5.49 -17.46 -0.10 1.94 16 3 Si 0.92 21.13 29.55 -169.99 -5.02 16.10 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.52 -14.46 9.46 30.91 0.29 -14.17 16 8 H 0.08 2.08 7.79 -52.49 -0.41 1.67 16 9 S -0.03 -0.86 21.41 -107.50 -2.30 -3.16 16 10 C -0.11 -2.19 5.45 -38.99 -0.21 -2.40 16 11 C -0.05 -0.91 9.79 -39.25 -0.38 -1.30 16 12 C -0.14 -1.84 10.02 -39.68 -0.40 -2.24 16 13 C -0.09 -1.10 9.54 -39.12 -0.37 -1.47 16 14 C -0.16 -2.42 5.87 -105.00 -0.62 -3.03 16 15 C 0.56 8.17 7.77 -12.32 -0.10 8.08 16 16 O -0.53 -9.86 16.34 5.32 0.09 -9.77 16 17 N -0.73 -6.59 5.51 -61.25 -0.34 -6.92 16 18 C 0.13 0.89 5.66 -4.04 -0.02 0.87 16 19 C -0.10 -0.33 5.46 -27.88 -0.15 -0.48 16 20 C -0.03 -0.10 5.13 -104.62 -0.54 -0.64 16 21 C -0.11 -0.47 9.70 -39.58 -0.38 -0.85 16 22 C -0.05 -0.29 9.56 -39.58 -0.38 -0.67 16 23 C -0.05 -0.37 6.85 -79.95 -0.55 -0.92 16 24 N 0.03 0.29 4.45 33.96 0.15 0.44 16 25 O -0.16 -1.77 18.45 -29.46 -0.54 -2.31 16 26 O -0.16 -1.78 18.45 -29.46 -0.54 -2.32 16 27 C -0.05 -0.30 9.56 -39.58 -0.38 -0.68 16 28 C -0.11 -0.48 9.70 -39.58 -0.38 -0.87 16 29 C -0.02 -0.35 9.34 -38.92 -0.36 -0.72 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.13 2.13 8.06 -52.48 -0.42 1.70 16 32 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.12 0.89 6.39 -52.49 -0.34 0.55 16 34 H 0.40 2.36 6.50 -40.82 -0.27 2.09 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.19 8.08 -51.93 -0.42 -0.23 16 38 H 0.09 0.18 8.09 -51.93 -0.42 -0.24 16 39 H 0.15 0.31 8.06 -52.49 -0.42 -0.11 16 40 H 0.15 0.72 7.61 -52.49 -0.40 0.32 16 41 H 0.15 0.75 7.61 -52.49 -0.40 0.35 16 42 H 0.15 0.35 8.06 -52.48 -0.42 -0.07 16 43 H 0.14 2.95 7.65 -52.49 -0.40 2.55 16 LS Contribution 399.62 15.07 6.02 6.02 Total: -1.00 -35.11 399.62 -11.51 -46.62 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.72 Total: -0.81 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -5.03 Total: -19.54 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.55 Total: -30.82 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -1.00 Total: -14.41 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.30 Total: -3.16 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.11 -11.51 -46.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079437362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.378 kcal (2) G-P(sol) polarization free energy of solvation -35.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds