Wall clock time and date at job start Tue Mar 31 2020 05:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47100 * 48.52192 * 3 2 1 5 5 C 1.36003 * 117.00046 * 179.97438 * 4 3 2 6 6 C 1.38701 * 119.98157 * 179.97438 * 5 4 3 7 7 C 1.38113 * 120.02114 * 180.02562 * 6 5 4 8 8 C 1.38867 * 119.97744 * 359.97438 * 7 6 5 9 9 N 1.39940 * 120.01803 * 179.97438 * 8 7 6 10 10 C 1.46500 * 119.99626 * 243.92990 * 9 8 7 11 11 S 1.65598 * 120.00152 * 63.92380 * 9 8 7 12 12 O 1.42099 * 106.40392 * 200.55537 * 11 9 8 13 13 O 1.42104 * 106.40252 * 333.48141 * 11 9 8 14 14 C 1.76198 * 107.21517 * 87.01662 * 11 9 8 15 15 C 1.38637 * 119.75416 * 269.72965 * 14 11 9 16 16 C 1.37618 * 120.25094 * 179.72530 * 15 14 11 17 17 C 1.40710 * 119.74269 * 0.56194 * 16 15 14 18 18 C 1.41396 * 120.24362 * 179.68315 * 17 16 15 19 19 H 1.07998 * 120.00434 * 205.64192 * 18 17 16 20 20 C 1.39947 * 119.99945 * 25.64156 * 18 17 16 21 21 N 1.30821 * 119.99746 * 15.77321 * 20 18 17 22 22 Si 1.86795 * 120.00073 * 195.76891 * 20 18 17 23 23 H 1.48498 * 109.47295 * 60.00225 * 22 20 18 24 24 H 1.48502 * 109.47412 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47367 * 299.99987 * 22 20 18 26 26 C 1.40714 * 119.51695 * 359.71295 * 17 16 15 27 27 C 1.37618 * 119.73979 * 359.97438 * 26 17 16 28 28 C 1.38863 * 119.96352 * 0.25703 * 8 7 6 29 29 C 1.38117 * 119.97586 * 359.50974 * 28 8 7 30 30 H 4.38440 * 5.44416 * 180.02562 * 4 1 2 31 31 H 1.08993 * 109.47559 * 288.51711 * 3 2 1 32 32 H 1.09006 * 109.46644 * 168.51577 * 3 2 1 33 33 H 1.08004 * 119.99199 * 359.97438 * 6 5 4 34 34 H 1.07996 * 120.00923 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47614 * 90.00173 * 10 9 8 36 36 H 1.09008 * 109.46715 * 209.99863 * 10 9 8 37 37 H 1.08998 * 109.47548 * 329.99300 * 10 9 8 38 38 H 1.08004 * 119.87323 * 359.97438 * 15 14 11 39 39 H 1.07996 * 120.12622 * 180.27770 * 16 15 14 40 40 H 0.97008 * 120.00069 * 180.02562 * 21 20 18 41 41 H 1.07998 * 120.13282 * 179.97438 * 26 17 16 42 42 H 1.08002 * 119.87674 * 179.97438 * 27 26 17 43 43 H 1.07989 * 120.00941 * 179.74009 * 28 8 7 44 44 H 1.07996 * 119.98586 * 180.20710 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1227 -0.8915 -1.0094 5 6 4.4711 -1.0085 -1.1433 6 6 5.0012 -1.8577 -2.1033 7 6 6.3703 -1.9775 -2.2396 8 6 7.2162 -1.2471 -1.4154 9 7 8.6036 -1.3683 -1.5524 10 6 9.4028 -1.9181 -0.4546 11 16 9.3420 -0.8904 -2.9555 12 8 10.5974 -1.5551 -2.9949 13 8 8.3671 -1.0091 -3.9826 14 6 9.6941 0.8290 -2.8001 15 6 8.7599 1.7633 -3.2202 16 6 9.0219 3.1088 -3.0983 17 6 10.2483 3.5349 -2.5558 18 6 10.5313 4.9147 -2.4319 19 1 11.5555 5.2571 -2.4215 20 6 9.4842 5.8367 -2.3229 21 7 8.2783 5.4249 -2.0266 22 14 9.8083 7.6553 -2.6002 23 1 10.3259 7.8615 -3.9767 24 1 8.5444 8.4154 -2.4272 25 1 10.8124 8.1348 -1.6168 26 6 11.1914 2.5777 -2.1380 27 6 10.9054 1.2375 -2.2634 28 6 6.6847 -0.4008 -0.4513 29 6 5.3153 -0.2786 -0.3197 30 1 -1.0498 0.0000 -0.0003 31 1 3.0095 -0.3255 0.9744 32 1 3.0088 1.0080 -0.2046 33 1 4.3431 -2.4260 -2.7440 34 1 6.7828 -2.6391 -2.9869 35 1 9.4804 -2.9995 -0.5677 36 1 10.3999 -1.4782 -0.4753 37 1 8.9229 -1.6858 0.4961 38 1 7.8214 1.4339 -3.6410 39 1 8.2910 3.8349 -3.4221 40 1 7.5524 6.0639 -1.9514 41 1 12.1361 2.8937 -1.7206 42 1 11.6278 0.5010 -1.9438 43 1 7.3418 0.1643 0.1928 44 1 4.9017 0.3821 0.4279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080752024.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:16 Heat of formation + Delta-G solvation = -3.311883 kcal Electronic energy + Delta-G solvation = -30500.137064 eV Core-core repulsion = 26283.488319 eV Total energy + Delta-G solvation = -4216.648744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.102 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.25158 -38.23292 -37.59676 -36.58551 -35.22237 -35.10339 -34.05456 -33.55123 -31.04516 -30.27095 -29.50431 -29.33817 -27.59820 -25.87252 -25.68816 -22.75609 -21.99446 -21.46751 -21.14457 -18.99123 -18.55861 -18.31763 -17.65006 -17.37580 -16.66946 -16.35770 -16.15874 -15.95598 -15.51152 -14.73254 -14.54098 -14.35216 -14.11722 -13.66360 -13.45081 -13.25451 -13.14247 -13.10808 -13.02777 -12.55829 -12.46742 -12.37108 -12.19226 -11.82288 -11.72717 -11.47370 -11.31751 -11.30867 -11.25248 -11.23070 -11.13903 -10.92078 -10.74470 -10.43967 -10.40961 -9.80203 -9.66367 -9.54302 -9.15037 -8.94051 -8.01357 -7.85369 -7.72111 -7.14740 -4.82711 1.00022 1.41035 1.48764 2.04866 2.23000 2.46118 2.86525 2.87667 2.90091 2.93185 3.41202 3.50108 3.64768 3.79314 4.11812 4.23081 4.47173 4.74940 4.91995 4.92502 4.96637 5.01839 5.18177 5.36791 5.38324 5.46914 5.54266 5.59606 5.67001 5.83778 5.86102 6.02891 6.04191 6.10121 6.18546 6.32927 6.58283 6.65418 6.66359 6.69931 6.89244 7.01770 7.08270 7.20246 7.31979 7.37198 7.39816 7.61943 7.74864 7.94635 8.30175 8.49067 8.62651 9.76180 Molecular weight = 371.10amu Principal moments of inertia in cm(-1) A = 0.007080 B = 0.003356 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3954.076695 B = 8341.111275 C =11541.982523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.195 4.195 3 C 0.170 3.830 4 O -0.311 6.311 5 C 0.123 3.877 6 C -0.138 4.138 7 C -0.067 4.067 8 C 0.115 3.885 9 N -0.958 5.958 10 C 0.097 3.903 11 S 2.683 3.317 12 O -0.978 6.978 13 O -0.971 6.971 14 C -0.783 4.783 15 C -0.012 4.012 16 C -0.180 4.180 17 C 0.140 3.860 18 C -0.435 4.435 19 H 0.087 0.913 20 C 0.072 3.928 21 N -0.767 5.767 22 Si 0.918 3.082 23 H -0.259 1.259 24 H -0.274 1.274 25 H -0.261 1.261 26 C -0.237 4.237 27 C -0.001 4.001 28 C -0.071 4.071 29 C -0.198 4.198 30 H 0.224 0.776 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.289 0.711 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.244 -7.916 6.852 13.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.195 4.195 3 C 0.096 3.904 4 O -0.226 6.226 5 C 0.078 3.922 6 C -0.158 4.158 7 C -0.088 4.088 8 C 0.021 3.979 9 N -0.786 5.786 10 C -0.048 4.048 11 S 2.785 3.215 12 O -0.969 6.969 13 O -0.962 6.962 14 C -0.880 4.880 15 C -0.032 4.032 16 C -0.201 4.201 17 C 0.136 3.864 18 C -0.462 4.462 19 H 0.105 0.895 20 C -0.150 4.150 21 N -0.390 5.390 22 Si 0.741 3.259 23 H -0.184 1.184 24 H -0.199 1.199 25 H -0.186 1.186 26 C -0.258 4.258 27 C -0.021 4.021 28 C -0.092 4.092 29 C -0.218 4.218 30 H 0.241 0.759 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.121 0.879 39 H 0.141 0.859 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.151 0.849 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.399 -8.568 6.117 14.113 hybrid contribution -0.022 1.808 0.549 1.889 sum -9.421 -6.760 6.666 13.375 Atomic orbital electron populations 1.24987 0.95845 0.98952 0.98405 1.22333 0.93598 1.01673 1.01937 1.19287 0.84802 0.94549 0.91763 1.86101 1.19664 1.62127 1.54691 1.18920 0.81360 0.96218 0.95686 1.20228 0.94531 1.01459 0.99545 1.21205 0.92077 0.97128 0.98348 1.17237 0.82480 0.98698 0.99496 1.55561 1.11501 1.76902 1.34638 1.21511 0.95141 0.98556 0.89557 1.01754 0.72452 0.75142 0.72148 1.93484 1.42441 1.75132 1.85800 1.93496 1.61502 1.87625 1.53552 1.29136 1.06278 1.20386 1.32153 1.20253 0.95426 0.93480 0.94070 1.21340 0.99676 0.93938 1.05126 1.17858 0.90945 0.92836 0.84733 1.19915 0.94620 0.91175 1.40519 0.89484 1.26126 0.94336 1.02719 0.91850 1.69801 1.01611 1.38199 1.29374 0.86184 0.79094 0.80074 0.80528 1.18358 1.19892 1.18578 1.21059 1.01418 0.92475 1.10814 1.20166 0.92982 0.95984 0.92952 1.21123 0.94497 0.95630 0.97992 1.21084 0.93796 1.03887 1.03007 0.75941 0.89474 0.89185 0.84791 0.84548 0.92475 0.90504 0.91125 0.87937 0.85907 0.89967 0.88149 0.87847 0.84904 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 19.25 29.55 0.57 -0.84 16 2 C -0.20 -2.04 13.73 -37.12 -0.51 -2.55 16 3 C 0.17 1.71 5.21 34.37 0.18 1.89 16 4 O -0.31 -3.99 10.10 -19.75 -0.20 -4.19 16 5 C 0.12 1.65 6.69 -39.24 -0.26 1.39 16 6 C -0.14 -1.90 9.98 -39.46 -0.39 -2.29 16 7 C -0.07 -1.00 8.73 -39.39 -0.34 -1.35 16 8 C 0.11 1.79 5.22 -83.69 -0.44 1.35 16 9 N -0.96 -15.40 3.23 -65.34 -0.21 -15.61 16 10 C 0.10 1.24 10.23 59.85 0.61 1.85 16 11 S 2.68 52.70 5.61 -107.50 -0.60 52.09 16 12 O -0.98 -20.44 16.23 -57.17 -0.93 -21.37 16 13 O -0.97 -20.68 15.08 -57.17 -0.86 -21.55 16 14 C -0.78 -17.30 6.00 -39.29 -0.24 -17.54 16 15 C -0.01 -0.28 9.49 -39.66 -0.38 -0.66 16 16 C -0.18 -4.50 8.69 -38.87 -0.34 -4.84 16 17 C 0.14 3.51 5.57 -106.83 -0.59 2.92 16 18 C -0.43 -10.54 9.06 -37.74 -0.34 -10.89 16 19 H 0.09 1.99 7.89 -52.49 -0.41 1.58 16 20 C 0.07 1.63 5.18 -17.34 -0.09 1.54 16 21 N -0.77 -17.98 10.91 55.55 0.61 -17.38 16 22 Si 0.92 16.88 29.59 -169.99 -5.03 11.85 16 23 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 24 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 25 H -0.26 -4.74 7.11 56.52 0.40 -4.33 16 26 C -0.24 -5.53 9.80 -38.87 -0.38 -5.91 16 27 C 0.00 -0.01 9.49 -39.66 -0.38 -0.39 16 28 C -0.07 -1.02 9.51 -39.39 -0.37 -1.39 16 29 C -0.20 -2.53 9.03 -39.46 -0.36 -2.89 16 30 H 0.22 1.01 7.80 -54.10 -0.42 0.59 16 31 H 0.09 0.70 7.66 -51.93 -0.40 0.30 16 32 H 0.09 0.82 7.66 -51.93 -0.40 0.43 16 33 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.14 1.99 7.54 -52.49 -0.40 1.60 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.98 7.71 -51.92 -0.40 0.58 16 37 H 0.07 0.75 7.73 -51.93 -0.40 0.35 16 38 H 0.10 2.29 7.59 -52.48 -0.40 1.89 16 39 H 0.12 3.11 6.17 -52.49 -0.32 2.79 16 40 H 0.29 6.10 8.30 -40.82 -0.34 5.77 16 41 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 42 H 0.10 2.03 7.60 -52.49 -0.40 1.63 16 43 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.13 1.33 6.29 -52.49 -0.33 1.00 16 LS Contribution 395.16 15.07 5.96 5.96 Total: -1.00 -30.61 395.16 -10.43 -41.04 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.11 Total: 9.75 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: -4.05 Total: -40.59 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.40 Total: -32.99 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -1.99 Total: -47.11 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Atomic # 16 Polarization: 52.70 SS G_CDS: -0.60 Total: 52.09 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.61 -10.43 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080752024.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.727 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds