Wall clock time and date at job start Tue Mar 31 2020 05:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47145 * 2 1 4 4 C 1.46493 * 120.00115 * 270.00502 * 3 2 1 5 5 C 1.50701 * 109.47004 * 269.99626 * 4 3 2 6 6 H 1.08000 * 119.99888 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00452 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99945 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00416 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46912 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.46927 * 119.99477 * 9 7 5 12 12 H 1.48492 * 109.47110 * 239.99615 * 9 7 5 13 13 C 1.34778 * 119.99717 * 89.99840 * 3 2 1 14 14 O 1.21280 * 120.00001 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99844 * 0.02562 * 13 3 2 16 16 C 1.52996 * 109.46695 * 179.97438 * 15 13 3 17 17 S 1.81399 * 109.47095 * 179.97438 * 16 15 13 18 18 C 1.76203 * 103.00367 * 180.02562 * 17 16 15 19 19 C 1.38952 * 120.08029 * 359.97438 * 18 17 16 20 20 C 1.38089 * 119.92978 * 180.02562 * 19 18 17 21 21 C 1.38315 * 120.09232 * 359.97438 * 20 19 18 22 22 C 1.38280 * 120.16694 * 0.02562 * 21 20 19 23 23 C 1.38175 * 120.07067 * 359.97438 * 22 21 20 24 24 Br 1.89104 * 120.04543 * 180.02562 * 23 22 21 25 25 H 1.09002 * 109.47246 * 299.99687 * 1 2 3 26 26 H 1.09005 * 109.47072 * 59.99917 * 1 2 3 27 27 H 1.09009 * 109.47080 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47246 * 240.00313 * 2 1 3 29 29 H 1.08997 * 109.47271 * 120.00258 * 2 1 3 30 30 H 1.08998 * 109.47769 * 29.99567 * 4 3 2 31 31 H 1.08999 * 109.47475 * 149.99901 * 4 3 2 32 32 H 0.96994 * 120.00589 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.46941 * 59.99931 * 15 13 3 34 34 H 1.09001 * 109.47056 * 299.99247 * 15 13 3 35 35 H 1.09008 * 109.47454 * 60.00388 * 16 15 13 36 36 H 1.08998 * 109.47463 * 300.00133 * 16 15 13 37 37 H 1.08003 * 120.03715 * 0.04407 * 19 18 17 38 38 H 1.08005 * 119.95140 * 180.27643 * 20 19 18 39 39 H 1.08003 * 119.91246 * 179.97438 * 21 20 19 40 40 H 1.07997 * 119.96662 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0718 -1.2686 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1494 2.3906 -2.8774 8 7 3.3494 3.1267 -3.6175 9 14 5.9134 2.0965 -3.4170 10 1 6.6008 1.2405 -2.4170 11 1 5.9203 1.4184 -4.7381 12 1 6.6215 3.3973 -3.5247 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1673 15 6 1.9923 1.3058 2.4723 16 6 2.3241 2.2430 3.6352 17 16 2.0217 1.3879 5.2062 18 6 2.4511 2.6028 6.4080 19 6 2.8947 3.8560 6.0037 20 6 3.2308 4.8057 6.9482 21 6 3.1260 4.5112 8.2955 22 6 2.6850 3.2653 8.7022 23 6 2.3468 2.3100 7.7630 24 35 1.7431 0.6066 8.3200 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.5817 1.6878 -2.0284 31 1 2.0955 3.1411 -1.1383 32 1 3.6753 3.5172 -4.4434 33 1 2.6228 0.4186 2.5298 34 1 0.9444 1.0114 2.5303 35 1 1.6938 3.1305 3.5779 36 1 3.3720 2.5372 3.5772 37 1 2.9762 4.0873 4.9518 38 1 3.5715 5.7814 6.6343 39 1 3.3901 5.2559 9.0317 40 1 2.6040 3.0389 9.7551 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084774713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:07 Heat of formation + Delta-G solvation = -18.980076 kcal Electronic energy + Delta-G solvation = -22150.813544 eV Core-core repulsion = 18716.624841 eV Total energy + Delta-G solvation = -3434.188703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 371.030 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.32546 -39.20062 -35.41636 -33.25323 -32.74177 -32.36204 -31.45321 -30.11458 -29.44517 -27.42705 -24.86529 -23.23641 -23.05520 -22.70052 -21.78503 -18.46688 -17.91877 -16.91700 -16.45568 -16.13299 -15.72018 -15.60047 -15.35284 -14.75500 -14.40825 -14.07542 -13.83183 -13.76780 -13.50866 -13.36422 -12.81656 -12.34670 -12.30986 -12.03180 -11.79262 -11.67406 -11.51874 -11.38846 -11.19279 -11.15560 -10.91505 -10.79898 -10.72968 -10.55191 -10.16700 -10.03187 -10.02742 -9.65204 -9.09781 -9.00164 -8.46727 -7.72458 -7.63842 -6.07443 -4.12228 0.72293 0.88433 1.18506 1.39643 2.24600 3.23905 3.27593 3.31354 3.35854 3.40331 3.90097 4.42232 4.42977 4.63532 4.75385 4.91063 4.91752 5.00507 5.06355 5.16626 5.27510 5.27839 5.46102 5.51816 5.59889 5.68728 5.71024 5.81161 5.85783 5.86998 6.03729 6.08793 6.20983 6.41439 6.46629 7.01927 7.40322 7.49798 7.88898 8.19993 8.35636 8.85541 9.01817 9.53088 11.00710 Molecular weight = 371.03amu Principal moments of inertia in cm(-1) A = 0.015539 B = 0.002198 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.526429 B =12733.792106 C =13726.058900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.594 5.594 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.511 3.489 14 O -0.543 6.543 15 C -0.126 4.126 16 C -0.098 4.098 17 S -0.086 6.086 18 C -0.057 4.057 19 C -0.128 4.128 20 C -0.083 4.083 21 C -0.126 4.126 22 C -0.075 4.075 23 C -0.082 4.082 24 Br -0.037 7.037 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.245 -4.176 25.856 26.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.326 5.326 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.296 3.704 14 O -0.421 6.421 15 C -0.168 4.168 16 C -0.246 4.246 17 S 0.161 5.839 18 C -0.173 4.173 19 C -0.153 4.153 20 C -0.103 4.103 21 C -0.147 4.147 22 C -0.096 4.096 23 C -0.169 4.169 24 Br 0.049 6.951 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.696 -5.327 25.893 27.042 hybrid contribution 1.558 1.504 -0.733 2.286 sum -4.138 -3.822 25.160 25.783 Atomic orbital electron populations 1.22224 0.96694 1.01529 1.02341 1.21450 0.93586 0.84089 1.02828 1.48243 1.63377 1.13310 1.07646 1.19292 0.96344 0.93642 0.78072 1.21466 0.96889 1.31825 1.06295 0.92412 1.24939 0.97877 0.94913 0.96394 1.69939 1.35608 1.33484 1.14342 0.86448 0.84602 0.78068 0.78346 1.19786 1.20940 1.20878 1.20037 0.78677 0.86861 0.84846 1.90672 1.46131 1.18092 1.87221 1.21423 1.04165 0.99201 0.91965 1.23556 1.06689 1.01588 0.92808 1.85679 1.81711 1.18897 0.97628 1.21731 1.02005 0.98112 0.95425 1.21387 1.00733 0.92095 1.01058 1.21251 0.96960 0.99248 0.92835 1.21183 1.00845 0.96491 0.96222 1.21048 0.97230 0.92492 0.98880 1.21325 1.08425 0.93660 0.93457 1.96714 1.87863 1.20617 1.89877 0.93021 0.92026 0.92073 0.89855 0.91606 0.94933 0.93873 0.92753 0.88415 0.88508 0.88481 0.88357 0.84370 0.84916 0.84963 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.10 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.59 -12.11 2.46 -175.06 -0.43 -12.54 16 4 C 0.25 6.29 5.16 -5.20 -0.03 6.27 16 5 C -0.53 -14.71 9.39 -34.44 -0.32 -15.03 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 9 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.51 10.08 7.67 -10.98 -0.08 10.00 16 14 O -0.54 -12.98 15.56 5.56 0.09 -12.90 16 15 C -0.13 -1.76 4.26 -27.88 -0.12 -1.88 16 16 C -0.10 -1.30 3.62 37.16 0.13 -1.17 16 17 S -0.09 -1.05 20.59 -107.50 -2.21 -3.26 16 18 C -0.06 -0.68 6.11 -39.03 -0.24 -0.92 16 19 C -0.13 -1.43 9.36 -39.37 -0.37 -1.80 16 20 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 21 C -0.13 -1.01 10.04 -39.54 -0.40 -1.41 16 22 C -0.08 -0.67 9.78 -39.59 -0.39 -1.06 16 23 C -0.08 -0.90 6.24 -39.31 -0.25 -1.15 16 24 Br -0.04 -0.38 32.39 -68.01 -2.20 -2.58 16 25 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 28 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 29 H 0.07 0.84 6.44 -51.93 -0.33 0.51 16 30 H 0.03 0.84 8.07 -51.93 -0.42 0.43 16 31 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.10 1.24 7.40 -51.93 -0.38 0.86 16 34 H 0.10 1.17 7.19 -51.93 -0.37 0.80 16 35 H 0.10 1.33 7.71 -51.92 -0.40 0.93 16 36 H 0.10 1.40 7.71 -51.93 -0.40 1.00 16 37 H 0.14 1.56 5.88 -52.48 -0.31 1.25 16 38 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -32.35 368.15 -11.15 -43.50 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.46 Total: -0.89 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.19 Total: -7.91 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.31 Total: -38.18 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -2.21 Total: -3.26 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -2.20 Total: -2.58 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.35 -11.15 -43.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084774713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.516 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds