Wall clock time and date at job start Tue Mar 31 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46503 * 120.00014 * 2 1 4 4 C 1.34773 * 120.00036 * 179.97438 * 2 1 3 5 5 O 1.21599 * 120.00281 * 354.28509 * 4 2 1 6 6 C 1.47502 * 120.00155 * 174.28738 * 4 2 1 7 7 C 1.39702 * 120.19951 * 317.66652 * 6 4 2 8 8 C 1.37787 * 119.91984 * 179.97438 * 7 6 4 9 9 C 1.38563 * 120.33515 * 359.97438 * 8 7 6 10 10 C 1.38012 * 120.40861 * 0.02562 * 9 8 7 11 11 C 1.38865 * 120.06922 * 359.97438 * 10 9 8 12 12 N 1.39273 * 120.16588 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99913 * 25.70038 * 12 11 10 14 14 O 1.21576 * 120.00064 * 6.20895 * 13 12 11 15 15 N 1.34779 * 119.99862 * 186.21313 * 13 12 11 16 16 C 1.46499 * 119.99740 * 359.97438 * 15 13 12 17 17 C 1.50703 * 109.47084 * 90.00495 * 16 15 13 18 18 H 1.08004 * 119.99794 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00342 * 179.97438 * 17 16 15 20 20 N 1.31522 * 119.99802 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00053 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47438 * 60.00190 * 21 19 17 23 23 H 1.48508 * 109.47062 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47259 * 299.99965 * 21 19 17 25 25 C 1.46499 * 120.00304 * 180.02562 * 15 13 12 26 26 C 1.50697 * 109.47046 * 89.99294 * 25 15 13 27 27 C 1.34510 * 125.78823 * 89.72374 * 26 25 15 28 28 C 1.41386 * 106.84093 * 179.88669 * 27 26 25 29 29 C 1.34514 * 106.84090 * 0.36972 * 28 27 26 30 30 O 1.34301 * 108.41739 * 359.76871 * 29 28 27 31 31 H 1.08999 * 109.46849 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47154 * 300.00011 * 1 2 3 33 33 H 1.08996 * 109.46762 * 60.00210 * 1 2 3 34 34 H 1.08997 * 109.46750 * 273.35871 * 3 2 1 35 35 H 1.08996 * 109.46864 * 33.36161 * 3 2 1 36 36 H 1.09004 * 109.46751 * 153.36439 * 3 2 1 37 37 H 1.07993 * 120.03805 * 359.96220 * 7 6 4 38 38 H 1.08004 * 119.83093 * 180.02562 * 8 7 6 39 39 H 1.08001 * 119.80275 * 180.02562 * 9 8 7 40 40 H 1.08001 * 119.97107 * 179.72318 * 10 9 8 41 41 H 0.96999 * 119.99787 * 205.70542 * 12 11 10 42 42 H 1.09006 * 109.47306 * 209.99983 * 16 15 13 43 43 H 1.09001 * 109.47911 * 330.00706 * 16 15 13 44 44 H 0.96993 * 119.99820 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.46954 * 209.99987 * 25 15 13 46 46 H 1.09002 * 109.46390 * 329.99376 * 25 15 13 47 47 H 1.08003 * 126.57938 * 0.02562 * 27 26 25 48 48 H 1.08004 * 126.58101 * 180.16531 * 28 27 26 49 49 H 1.07996 * 125.78604 * 179.75464 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5355 -2.2176 0.1059 6 6 3.6085 -1.1704 -0.1266 7 6 4.2366 -0.3214 -1.0411 8 6 5.6097 -0.3288 -1.1547 9 6 6.3727 -1.1744 -0.3656 10 6 5.7665 -2.0189 0.5422 11 6 4.3838 -2.0253 0.6707 12 7 3.7699 -2.8770 1.5858 13 6 4.4460 -3.2981 2.6730 14 8 5.5490 -2.8477 2.9151 15 7 3.8994 -4.2186 3.4918 16 6 2.5701 -4.7610 3.2002 17 6 2.7063 -5.9838 2.3299 18 1 3.6852 -6.3232 2.0249 19 6 1.5814 -6.6699 1.9239 20 7 0.3893 -6.2568 2.2957 21 14 1.7503 -8.1859 0.8458 22 1 2.5586 -9.2101 1.5549 23 1 0.4028 -8.7357 0.5500 24 1 2.4236 -7.8169 -0.4253 25 6 4.6340 -4.6760 4.6738 26 6 4.2930 -3.7961 5.8488 27 6 3.2848 -3.9977 6.7161 28 6 3.3332 -2.9403 7.6533 29 6 4.3629 -2.1512 7.2979 30 8 4.9407 -2.6746 6.2042 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.3271 1.6134 -1.0259 35 1 1.6359 2.0125 0.5651 36 1 3.1748 1.1240 0.4607 37 1 3.6465 0.3398 -1.6583 38 1 6.0938 0.3285 -1.8619 39 1 7.4484 -1.1729 -0.4615 40 1 6.3677 -2.6783 1.1505 41 1 2.8558 -3.1671 1.4406 42 1 2.0757 -5.0323 4.1330 43 1 1.9769 -4.0091 2.6798 44 1 -0.4020 -6.7397 2.0104 45 1 4.3561 -5.7058 4.8983 46 1 5.7051 -4.6230 4.4789 47 1 2.5760 -4.8124 6.7009 48 1 2.6685 -2.7924 8.4917 49 1 4.6724 -1.2497 7.8057 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089312150.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:04 Heat of formation + Delta-G solvation = 6.002366 kcal Electronic energy + Delta-G solvation = -34855.253466 eV Core-core repulsion = 30364.381593 eV Total energy + Delta-G solvation = -4490.871873 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 371.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.17573 -40.74017 -39.47572 -37.96614 -35.68050 -35.32572 -34.26071 -32.76255 -32.50236 -31.29253 -30.55503 -29.03015 -27.93629 -27.34892 -26.27765 -25.35281 -23.21807 -23.06462 -22.24706 -21.34162 -20.37295 -19.66747 -19.27254 -17.73221 -17.21786 -17.11666 -16.86326 -16.35689 -16.17009 -15.87295 -15.62190 -15.08245 -14.99642 -14.57736 -14.48978 -14.24682 -14.05367 -13.76425 -13.37708 -13.18914 -12.96847 -12.74427 -12.60594 -12.51232 -12.46571 -12.42277 -12.23754 -12.17687 -11.92701 -11.87080 -11.51828 -11.38805 -11.24571 -10.93032 -10.72825 -10.22097 -10.16080 -9.86511 -9.75493 -9.57293 -9.40644 -8.74770 -8.67337 -8.53996 -8.21646 -8.03315 -7.58483 -6.15352 -4.23830 1.13423 1.58018 2.01099 2.85379 2.88318 3.07474 3.28367 3.31540 3.32848 3.33085 3.38349 3.69571 4.12553 4.34145 4.57757 4.61021 4.90478 5.05408 5.06676 5.15529 5.18732 5.23568 5.31254 5.34237 5.36804 5.46724 5.53252 5.58453 5.62696 5.68621 5.76333 5.90184 6.02941 6.05990 6.11443 6.27389 6.35585 6.40354 6.42135 6.53477 6.59539 6.67535 6.81910 6.84212 7.10516 7.21992 7.28759 7.36570 7.52595 7.68726 7.77835 8.02506 8.26244 8.45287 8.82143 9.09388 9.44629 10.91593 Molecular weight = 371.17amu Principal moments of inertia in cm(-1) A = 0.006052 B = 0.004322 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4625.240008 B = 6477.117445 C = 8430.423840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.620 5.620 3 C 0.078 3.922 4 C 0.561 3.439 5 O -0.520 6.520 6 C -0.186 4.186 7 C -0.066 4.066 8 C -0.164 4.164 9 C -0.074 4.074 10 C -0.143 4.143 11 C 0.245 3.755 12 N -0.672 5.672 13 C 0.708 3.292 14 O -0.593 6.593 15 N -0.602 5.602 16 C 0.239 3.761 17 C -0.544 4.544 18 H 0.062 0.938 19 C 0.070 3.930 20 N -0.885 5.885 21 Si 0.899 3.101 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.213 3.787 26 C -0.017 4.017 27 C -0.201 4.201 28 C -0.217 4.217 29 C -0.053 4.053 30 O -0.166 6.166 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.153 0.847 41 H 0.431 0.569 42 H 0.042 0.958 43 H 0.033 0.967 44 H 0.266 0.734 45 H 0.116 0.884 46 H 0.092 0.908 47 H 0.149 0.851 48 H 0.143 0.857 49 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.170 14.646 -0.778 15.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.354 5.354 3 C -0.065 4.065 4 C 0.350 3.650 5 O -0.396 6.396 6 C -0.193 4.193 7 C -0.085 4.085 8 C -0.184 4.184 9 C -0.093 4.093 10 C -0.164 4.164 11 C 0.144 3.856 12 N -0.321 5.321 13 C 0.410 3.590 14 O -0.474 6.474 15 N -0.335 5.335 16 C 0.119 3.881 17 C -0.583 4.583 18 H 0.080 0.920 19 C -0.135 4.135 20 N -0.522 5.522 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C 0.089 3.911 26 C -0.069 4.069 27 C -0.221 4.221 28 C -0.236 4.236 29 C -0.121 4.121 30 O -0.061 6.061 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.171 0.829 41 H 0.277 0.723 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.133 0.867 46 H 0.111 0.889 47 H 0.167 0.833 48 H 0.161 0.839 49 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 5.544 14.338 -0.629 15.385 hybrid contribution -0.954 -0.792 -0.465 1.324 sum 4.589 13.546 -1.094 14.344 Atomic orbital electron populations 1.21688 0.78919 1.04683 1.00909 1.47554 1.07064 1.06167 1.74638 1.21938 0.97924 0.85088 1.01546 1.18395 0.87106 0.83564 0.75921 1.90864 1.69527 1.30651 1.48570 1.19430 0.92444 1.02181 1.05252 1.21033 0.94812 0.96235 0.96390 1.20886 0.93396 1.02077 1.02017 1.21172 0.99892 0.94357 0.93904 1.21477 0.92967 1.01888 1.00023 1.17551 0.91887 0.88033 0.88138 1.43164 1.19574 1.47474 1.21889 1.15838 0.83664 0.79756 0.79705 1.90802 1.20010 1.61077 1.75498 1.47508 1.21491 1.40903 1.23566 1.19453 0.76837 0.94215 0.97585 1.21383 0.93386 1.11209 1.32309 0.91951 1.24922 0.94984 0.97703 0.95846 1.69912 0.97722 1.39964 1.44628 0.86543 0.77255 0.82587 0.81014 1.20097 1.21140 1.20054 1.19628 0.98081 0.94333 0.79105 1.23288 0.95447 0.88774 0.99418 1.21688 1.00903 1.02326 0.97223 1.21788 1.01387 0.97481 1.02950 1.23953 0.97201 1.00946 0.90008 1.84108 1.49991 1.33859 1.38101 0.89080 0.92307 0.92408 0.92570 0.91364 0.90206 0.85515 0.85910 0.85704 0.82919 0.72339 0.93989 0.94941 0.92415 0.86651 0.88943 0.83321 0.83900 0.78756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 10.70 59.85 0.64 1.60 16 2 N -0.62 -8.40 3.27 -190.77 -0.62 -9.03 16 3 C 0.08 0.74 9.02 59.85 0.54 1.28 16 4 C 0.56 9.91 7.03 -12.49 -0.09 9.82 16 5 O -0.52 -11.44 14.25 5.28 0.08 -11.37 16 6 C -0.19 -3.09 4.92 -104.81 -0.52 -3.61 16 7 C -0.07 -0.83 7.76 -39.20 -0.30 -1.14 16 8 C -0.16 -1.91 10.02 -39.63 -0.40 -2.31 16 9 C -0.07 -0.98 10.03 -39.54 -0.40 -1.38 16 10 C -0.14 -2.46 8.68 -39.43 -0.34 -2.80 16 11 C 0.25 4.68 6.40 -83.48 -0.53 4.14 16 12 N -0.67 -14.63 5.02 -14.05 -0.07 -14.70 16 13 C 0.71 15.81 8.06 -86.91 -0.70 15.11 16 14 O -0.59 -13.44 13.15 5.30 0.07 -13.37 16 15 N -0.60 -13.16 2.44 -182.18 -0.44 -13.61 16 16 C 0.24 5.87 4.98 -5.19 -0.03 5.85 16 17 C -0.54 -14.46 9.39 -34.44 -0.32 -14.79 16 18 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 19 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 20 N -0.88 -25.07 13.29 55.43 0.74 -24.34 16 21 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.21 4.01 5.94 -5.20 -0.03 3.97 16 26 C -0.02 -0.32 6.90 -35.63 -0.25 -0.56 16 27 C -0.20 -3.43 10.81 -39.70 -0.43 -3.86 16 28 C -0.22 -3.22 10.91 -39.70 -0.43 -3.65 16 29 C -0.05 -0.77 12.09 29.42 0.36 -0.41 16 30 O -0.17 -3.02 10.65 5.71 0.06 -2.96 16 31 H 0.09 1.32 6.91 -51.93 -0.36 0.96 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.41 7.15 -51.93 -0.37 0.04 16 35 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 36 H 0.08 0.82 6.14 -51.93 -0.32 0.51 16 37 H 0.13 1.25 6.23 -52.49 -0.33 0.93 16 38 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.15 2.87 5.88 -52.49 -0.31 2.56 16 41 H 0.43 10.23 4.08 -40.82 -0.17 10.06 16 42 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 43 H 0.03 0.88 6.28 -51.93 -0.33 0.55 16 44 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 45 H 0.12 2.00 8.07 -51.93 -0.42 1.58 16 46 H 0.09 1.69 7.42 -51.93 -0.39 1.30 16 47 H 0.15 2.43 8.06 -52.48 -0.42 2.01 16 48 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 49 H 0.20 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 409.04 15.07 6.16 6.16 Total: -1.00 -33.59 409.04 -8.71 -42.29 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -6.33 Total: 15.61 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -3.33 Total: 9.06 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.40 Total: -61.67 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: 0.21 Total: -27.70 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.59 -8.71 -42.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089312150.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.295 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds