Wall clock time and date at job start Tue Mar 31 2020 05:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46496 * 120.00272 * 2 1 4 4 C 1.39198 * 120.00200 * 179.97438 * 2 1 3 5 5 C 1.39379 * 119.86663 * 5.67090 * 4 2 1 6 6 C 1.36519 * 120.39792 * 180.02562 * 5 4 2 7 7 C 1.39880 * 120.11786 * 359.97438 * 6 5 4 8 8 C 1.43204 * 120.13413 * 179.97438 * 7 6 5 9 9 N 6.73235 * 119.65032 * 179.97438 * 2 1 3 10 10 C 1.40558 * 119.73724 * 359.97438 * 7 6 5 11 11 N 1.39041 * 120.19841 * 180.02562 * 10 7 6 12 12 S 1.65598 * 120.00218 * 215.72173 * 11 10 7 13 13 O 1.42101 * 106.40321 * 308.41074 * 12 11 10 14 14 O 1.42095 * 106.40330 * 175.48759 * 12 11 10 15 15 C 1.76197 * 107.21895 * 61.94788 * 12 11 10 16 16 C 1.38640 * 119.75137 * 90.00099 * 15 12 11 17 17 C 1.37613 * 120.25059 * 180.28011 * 16 15 12 18 18 C 1.40715 * 119.74252 * 359.51687 * 17 16 15 19 19 C 1.41396 * 120.24325 * 180.23414 * 18 17 16 20 20 H 1.08001 * 120.00147 * 162.26857 * 19 18 17 21 21 C 1.39948 * 119.99900 * 342.26885 * 19 18 17 22 22 N 1.30819 * 119.99923 * 326.48501 * 21 19 18 23 23 Si 1.86804 * 120.00021 * 146.48804 * 21 19 18 24 24 H 1.48503 * 109.46863 * 94.98735 * 23 21 19 25 25 H 1.48494 * 109.47219 * 214.98959 * 23 21 19 26 26 H 1.48503 * 109.47048 * 334.99456 * 23 21 19 27 27 C 1.40719 * 119.51540 * 0.47564 * 18 17 16 28 28 C 1.37618 * 119.74014 * 359.75884 * 27 18 17 29 29 C 1.38619 * 119.60957 * 0.27872 * 10 7 6 30 30 H 1.09003 * 109.47481 * 175.43829 * 1 2 3 31 31 H 1.08992 * 109.47557 * 295.43982 * 1 2 3 32 32 H 1.09007 * 109.47211 * 55.43984 * 1 2 3 33 33 H 1.09010 * 109.47120 * 269.99914 * 3 2 1 34 34 H 1.08996 * 109.47076 * 29.99653 * 3 2 1 35 35 H 1.09001 * 109.47563 * 150.00105 * 3 2 1 36 36 H 1.07998 * 119.79457 * 0.02562 * 5 4 2 37 37 H 1.07990 * 119.93891 * 179.97438 * 6 5 4 38 38 H 0.97000 * 119.99860 * 35.72155 * 11 10 7 39 39 H 1.08000 * 119.86950 * 359.97438 * 16 15 12 40 40 H 1.08000 * 120.12868 * 179.71735 * 17 16 15 41 41 H 0.97004 * 119.99753 * 179.97438 * 22 21 19 42 42 H 1.07994 * 120.12651 * 179.73011 * 27 18 17 43 43 H 1.08003 * 119.87137 * 179.97438 * 28 27 18 44 44 H 1.08001 * 120.06048 * 179.70188 * 29 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1609 -1.2055 0.0005 5 6 1.4664 -2.4080 -0.1184 6 6 2.1381 -3.5966 -0.1186 7 6 3.5317 -3.6153 0.0004 8 6 4.2365 -4.8618 0.0008 9 7 4.7954 -5.8508 0.0026 10 6 4.2375 -2.4056 0.1195 11 7 5.6229 -2.4130 0.2377 12 16 6.3780 -1.2949 1.1980 13 8 5.8841 -0.0238 0.7983 14 8 7.7591 -1.6288 1.1927 15 6 5.8098 -1.5538 2.8456 16 6 6.4909 -2.4277 3.6789 17 6 6.0529 -2.6419 4.9657 18 6 4.9149 -1.9622 5.4380 19 6 4.4585 -2.1706 6.7600 20 1 3.7831 -1.4619 7.2161 21 6 4.8819 -3.2952 7.4773 22 7 5.1088 -4.4221 6.8528 23 14 5.1230 -3.1871 9.3266 24 1 3.8913 -3.6514 10.0142 25 1 6.2670 -4.0448 9.7276 26 1 5.4020 -1.7793 9.7080 27 6 4.2315 -1.0774 4.5835 28 6 4.6848 -0.8823 3.2988 29 6 3.5439 -1.2055 0.1237 30 1 -0.3634 -1.0244 -0.0817 31 1 -0.3634 0.4414 0.9279 32 1 -0.3634 0.5830 -0.8464 33 1 2.3792 1.5833 -1.0278 34 1 1.6084 2.0283 0.5138 35 1 3.1499 1.1384 0.5138 36 1 0.3904 -2.3994 -0.2109 37 1 1.5925 -4.5239 -0.2107 38 1 6.1471 -3.0731 -0.2423 39 1 7.3658 -2.9461 3.3150 40 1 6.5823 -3.3266 5.6117 41 1 5.4026 -5.2015 7.3500 42 1 3.3545 -0.5539 4.9343 43 1 4.1616 -0.2040 2.6410 44 1 4.0785 -0.2720 0.2197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089323060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:31 Heat of formation + Delta-G solvation = 13.727523 kcal Electronic energy + Delta-G solvation = -31383.577103 eV Core-core repulsion = 27199.959994 eV Total energy + Delta-G solvation = -4183.617109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.109 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.04843 -37.59362 -37.34763 -36.73981 -35.74378 -35.34903 -34.49903 -34.17498 -30.61663 -30.36313 -29.66335 -29.49120 -27.85106 -25.89561 -25.47905 -22.44381 -21.74242 -21.60742 -21.17594 -19.13853 -19.02257 -17.69649 -17.42923 -17.24243 -16.64866 -16.17354 -15.76555 -15.51232 -15.19215 -14.85404 -14.22564 -14.14693 -13.95466 -13.77855 -13.55095 -13.52801 -13.24972 -12.78072 -12.65246 -12.59336 -12.38501 -12.33917 -12.22075 -12.10795 -12.02942 -11.80550 -11.71989 -11.63726 -11.49617 -11.40093 -11.33188 -11.12546 -10.91986 -10.58324 -10.42816 -9.77589 -9.72378 -9.57332 -9.38296 -8.35088 -8.11969 -7.73931 -7.36928 -7.33846 -4.83401 0.88092 1.16332 1.53016 2.22357 2.78477 2.85675 2.92308 2.93679 2.96374 2.98311 3.19893 3.47423 3.58482 4.02673 4.06446 4.26138 4.31236 4.74459 4.84799 4.97612 5.10673 5.20556 5.21609 5.24660 5.35644 5.45691 5.53087 5.57771 5.69169 5.80292 5.96361 6.03929 6.08440 6.19656 6.33569 6.46977 6.56716 6.58300 6.66500 6.82597 7.01430 7.07380 7.15155 7.27704 7.36603 7.41008 7.57879 7.70919 7.82148 7.88225 8.23324 8.43805 8.61287 9.56123 Molecular weight = 371.11amu Principal moments of inertia in cm(-1) A = 0.008759 B = 0.003501 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.825020 B = 7996.170827 C = 8504.289953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.625 5.625 3 C 0.081 3.919 4 C 0.273 3.727 5 C -0.223 4.223 6 C 0.003 3.997 7 C -0.126 4.126 8 C 0.268 3.732 9 N -0.439 5.439 10 C 0.278 3.722 11 N -1.063 6.063 12 S 2.680 3.320 13 O -0.974 6.974 14 O -0.973 6.973 15 C -0.794 4.794 16 C -0.007 4.007 17 C -0.196 4.196 18 C 0.138 3.862 19 C -0.428 4.428 20 H 0.092 0.908 21 C 0.081 3.919 22 N -0.735 5.735 23 Si 0.908 3.092 24 H -0.264 1.264 25 H -0.269 1.269 26 H -0.253 1.253 27 C -0.240 4.240 28 C 0.014 3.986 29 C -0.261 4.261 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.421 0.579 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.293 0.707 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.566 5.680 -9.894 14.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.334 5.334 3 C -0.061 4.061 4 C 0.167 3.833 5 C -0.246 4.246 6 C -0.019 4.019 7 C -0.136 4.136 8 C -0.046 4.046 9 N -0.115 5.115 10 C 0.176 3.824 11 N -0.804 5.804 12 S 2.783 3.217 13 O -0.964 6.964 14 O -0.963 6.963 15 C -0.892 4.892 16 C -0.028 4.028 17 C -0.217 4.217 18 C 0.134 3.866 19 C -0.454 4.454 20 H 0.110 0.890 21 C -0.146 4.146 22 N -0.355 5.355 23 Si 0.730 3.270 24 H -0.189 1.189 25 H -0.193 1.193 26 H -0.176 1.176 27 C -0.261 4.261 28 C -0.006 4.006 29 C -0.287 4.287 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.256 0.744 39 H 0.119 0.881 40 H 0.130 0.870 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.125 4.857 -10.181 13.902 hybrid contribution -0.299 -0.501 1.225 1.356 sum -8.424 4.356 -8.957 13.044 Atomic orbital electron populations 1.21784 0.79276 1.03346 1.01317 1.46326 1.05269 1.03486 1.78296 1.21828 0.98224 0.84359 1.01731 1.17690 0.90520 0.85868 0.89241 1.20302 1.00067 0.90608 1.13603 1.20395 0.90989 0.98137 0.92368 1.15710 0.92428 0.85462 1.19969 1.25528 0.93467 0.92799 0.92845 1.81214 1.08143 1.11091 1.11092 1.16887 0.81860 0.91951 0.91743 1.53881 1.12440 1.52278 1.61832 1.01746 0.72705 0.72731 0.74494 1.93380 1.80754 1.39186 1.83111 1.93518 1.30868 1.84082 1.87870 1.28721 1.16772 1.23760 1.19948 1.20153 0.95511 0.92974 0.94143 1.21095 0.99215 1.05453 0.95894 1.17758 0.89268 0.88167 0.91408 1.19976 1.22855 1.05273 0.97269 0.88979 1.26221 0.91831 0.94046 1.02510 1.69911 1.24767 1.00486 1.40323 0.86290 0.79382 0.80596 0.80782 1.18900 1.19343 1.17578 1.20899 1.02677 1.07876 0.94661 1.20092 0.91612 0.93320 0.95598 1.21394 0.93586 0.98877 1.14847 0.90036 0.92505 0.92500 0.92953 0.91358 0.89641 0.84949 0.84997 0.74404 0.88097 0.86972 0.89538 0.88286 0.87922 0.80750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.62 59.84 0.64 1.25 16 2 N -0.63 -6.51 3.40 -187.58 -0.64 -7.15 16 3 C 0.08 0.79 10.35 59.84 0.62 1.40 16 4 C 0.27 3.41 6.53 -83.87 -0.55 2.86 16 5 C -0.22 -2.43 9.24 -39.78 -0.37 -2.79 16 6 C 0.00 0.04 9.69 -39.59 -0.38 -0.35 16 7 C -0.13 -1.84 5.77 -106.48 -0.61 -2.45 16 8 C 0.27 4.37 14.42 -22.47 -0.32 4.04 16 9 N -0.44 -7.95 18.54 41.84 0.78 -7.18 16 10 C 0.28 4.31 6.27 -83.58 -0.52 3.78 16 11 N -1.06 -17.20 5.45 32.56 0.18 -17.02 16 12 S 2.68 50.88 5.53 -107.50 -0.59 50.28 16 13 O -0.97 -18.42 14.11 -57.17 -0.81 -19.23 16 14 O -0.97 -20.72 17.26 -57.17 -0.99 -21.71 16 15 C -0.79 -17.27 5.86 -39.29 -0.23 -17.50 16 16 C -0.01 -0.17 9.49 -39.66 -0.38 -0.55 16 17 C -0.20 -4.89 8.82 -38.87 -0.34 -5.23 16 18 C 0.14 3.42 5.62 -106.82 -0.60 2.82 16 19 C -0.43 -10.22 8.96 -37.74 -0.34 -10.56 16 20 H 0.09 2.07 8.02 -52.49 -0.42 1.64 16 21 C 0.08 1.82 4.80 -17.34 -0.08 1.73 16 22 N -0.74 -17.17 11.58 55.55 0.64 -16.53 16 23 Si 0.91 16.44 29.67 -169.99 -5.04 11.40 16 24 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 25 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 26 H -0.25 -4.59 7.11 56.52 0.40 -4.18 16 27 C -0.24 -5.51 9.80 -38.87 -0.38 -5.89 16 28 C 0.01 0.30 9.44 -39.66 -0.37 -0.07 16 29 C -0.26 -3.83 7.86 -39.22 -0.31 -4.14 16 30 H 0.08 0.50 5.27 -51.93 -0.27 0.23 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 33 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 35 H 0.09 0.99 5.96 -51.93 -0.31 0.68 16 36 H 0.13 1.06 5.70 -52.49 -0.30 0.76 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.42 6.09 8.33 -34.47 -0.29 5.80 16 39 H 0.10 2.24 7.60 -52.49 -0.40 1.84 16 40 H 0.11 2.82 6.28 -52.49 -0.33 2.49 16 41 H 0.29 6.09 8.30 -40.82 -0.34 5.76 16 42 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 43 H 0.10 1.94 7.06 -52.48 -0.37 1.57 16 44 H 0.18 2.68 3.04 -52.49 -0.16 2.52 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -30.35 384.57 -9.73 -40.08 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -4.52 Total: 12.90 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: -4.54 Total: -31.64 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.96 Total: -47.87 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -1.79 Total: -40.94 kcal Atomic # 14 Polarization: 16.44 SS G_CDS: -5.04 Total: 11.40 kcal Atomic # 16 Polarization: 50.88 SS G_CDS: -0.59 Total: 50.28 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.35 -9.73 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089323060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.808 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds