Wall clock time and date at job start Tue Mar 31 2020 05:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47351 * 2 1 4 4 C 1.39491 * 120.00339 * 179.97438 * 3 2 1 5 5 C 1.38938 * 119.94358 * 0.02562 * 4 3 2 6 6 C 1.37806 * 120.15449 * 179.97438 * 5 4 3 7 7 C 1.39760 * 120.04255 * 359.97438 * 6 5 4 8 8 C 1.43202 * 120.05252 * 180.02562 * 7 6 5 9 9 N 7.57635 * 159.91267 * 359.91740 * 2 1 3 10 10 C 1.39814 * 119.89343 * 359.78110 * 7 6 5 11 11 C 1.38236 * 119.84389 * 0.49091 * 10 7 6 12 12 N 1.40027 * 120.02085 * 179.75598 * 11 10 7 13 13 S 1.65595 * 120.00473 * 35.60898 * 12 11 10 14 14 O 1.42104 * 106.40085 * 309.15540 * 13 12 11 15 15 O 1.42099 * 106.40277 * 176.23478 * 13 12 11 16 16 C 1.76201 * 107.21580 * 62.69236 * 13 12 11 17 17 C 1.38638 * 119.74730 * 90.00276 * 16 13 12 18 18 C 1.37619 * 120.24587 * 180.27276 * 17 16 13 19 19 C 1.40714 * 119.74570 * 359.52300 * 18 17 16 20 20 C 1.41397 * 120.24291 * 180.22878 * 19 18 17 21 21 H 1.08004 * 119.99743 * 203.90408 * 20 19 18 22 22 C 1.39944 * 120.00307 * 23.90855 * 20 19 18 23 23 N 1.30827 * 119.99820 * 16.43752 * 22 20 19 24 24 Si 1.86792 * 120.00064 * 196.44189 * 22 20 19 25 25 H 1.48497 * 109.47182 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47177 * 119.99750 * 24 22 20 27 27 H 1.48506 * 109.47201 * 239.99791 * 24 22 20 28 28 C 1.40718 * 119.51138 * 0.47314 * 19 18 17 29 29 C 1.37619 * 119.74548 * 359.75434 * 28 19 18 30 30 H 1.08992 * 109.47234 * 300.00197 * 1 2 3 31 31 H 1.09002 * 109.47131 * 60.00525 * 1 2 3 32 32 H 1.08999 * 109.46935 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47510 * 239.99736 * 2 1 3 34 34 H 1.09002 * 109.47131 * 119.99475 * 2 1 3 35 35 H 0.96999 * 119.99461 * 359.97438 * 3 2 1 36 36 H 1.07996 * 119.92547 * 0.02562 * 5 4 3 37 37 H 1.07997 * 119.97522 * 180.02562 * 6 5 4 38 38 H 1.08001 * 120.08026 * 180.27780 * 10 7 6 39 39 H 0.97002 * 119.99385 * 215.60858 * 12 11 10 40 40 H 1.07995 * 119.87667 * 0.02562 * 17 16 13 41 41 H 1.07996 * 120.12515 * 179.71697 * 18 17 16 42 42 H 0.96993 * 119.99968 * 180.02562 * 23 22 20 43 43 H 1.08004 * 120.12814 * 179.73099 * 28 19 18 44 44 H 1.07997 * 119.87748 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3898 1.6361 0.0005 5 6 4.2916 0.5792 0.0005 6 6 5.6474 0.8261 0.0005 7 6 6.1190 2.1417 0.0000 8 6 7.5279 2.3985 -0.0006 9 7 8.6454 2.6021 -0.0038 10 6 5.2132 3.2067 -0.0052 11 6 3.8542 2.9539 0.0005 12 7 2.9437 4.0177 0.0006 13 16 3.2880 5.4024 -0.8400 14 8 4.5918 5.8012 -0.4394 15 8 2.1469 6.2403 -0.7175 16 6 3.4029 4.9639 -2.5427 17 6 2.2704 5.0042 -3.3413 18 6 2.3473 4.6585 -4.6712 19 6 3.5834 4.2727 -5.2219 20 6 3.6754 3.9200 -6.5880 21 1 4.4742 3.2771 -6.9271 22 6 2.7315 4.4041 -7.5008 23 7 1.9694 5.4173 -7.1782 24 14 2.5596 3.6034 -9.1797 25 1 3.5305 2.4860 -9.2969 26 1 1.1793 3.0793 -9.3392 27 1 2.8327 4.6089 -10.2379 28 6 4.7262 4.2355 -4.4017 29 6 4.6250 4.5808 -3.0734 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.3880 2.1185 -0.0004 36 1 3.9293 -0.4381 -0.0003 37 1 6.3458 0.0024 0.0001 38 1 5.5744 4.2245 -0.0101 39 1 2.1112 3.9436 0.4930 40 1 1.3235 5.3042 -2.9174 41 1 1.4630 4.6862 -5.2904 42 1 1.3149 5.7526 -7.8107 43 1 5.6791 3.9366 -4.8130 44 1 5.5008 4.5534 -2.4421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089977550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:24 Heat of formation + Delta-G solvation = -2.112236 kcal Electronic energy + Delta-G solvation = -31032.875654 eV Core-core repulsion = 26848.571682 eV Total energy + Delta-G solvation = -4184.303972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.109 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.03867 -37.61978 -36.98271 -36.72724 -35.76985 -35.34603 -34.78216 -34.09451 -31.62910 -30.31239 -29.65963 -29.46187 -28.20478 -25.88320 -24.15447 -22.86680 -21.83880 -21.56785 -21.20914 -19.31996 -19.00353 -17.78110 -17.62528 -17.09859 -16.65876 -16.36681 -15.74534 -15.45767 -15.29581 -14.82323 -14.49481 -14.17203 -13.93971 -13.85305 -13.70661 -13.48050 -13.27223 -12.94355 -12.70617 -12.58803 -12.48393 -12.24803 -12.23193 -12.10590 -11.95305 -11.80752 -11.76438 -11.62247 -11.54297 -11.41329 -11.25816 -10.96728 -10.92339 -10.58249 -10.43399 -10.09572 -9.80412 -9.60077 -9.53091 -8.57163 -8.01455 -7.74020 -7.36939 -7.17364 -4.85142 0.89991 1.04040 1.41679 2.18906 2.83507 2.86226 2.89141 2.90216 2.92324 3.07634 3.17063 3.49572 3.62923 3.99431 4.12531 4.15681 4.34868 4.67542 4.80996 4.82151 4.91548 4.99145 5.08004 5.23816 5.31866 5.36837 5.48308 5.62971 5.64773 5.76872 5.89411 6.02519 6.06028 6.08853 6.24491 6.39133 6.60577 6.64368 6.67202 6.85355 6.96753 7.00951 7.18073 7.29638 7.39297 7.48307 7.58977 7.72978 7.73735 7.92702 8.27832 8.47445 8.60856 9.72486 Molecular weight = 371.11amu Principal moments of inertia in cm(-1) A = 0.007826 B = 0.003386 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3576.792911 B = 8267.641980 C = 8673.428122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.118 3.882 3 N -0.738 5.738 4 C 0.231 3.769 5 C -0.185 4.185 6 C -0.035 4.035 7 C -0.068 4.068 8 C 0.269 3.731 9 N -0.437 5.437 10 C -0.076 4.076 11 C 0.099 3.901 12 N -1.060 6.060 13 S 2.684 3.316 14 O -0.974 6.974 15 O -0.975 6.975 16 C -0.783 4.783 17 C -0.015 4.015 18 C -0.182 4.182 19 C 0.140 3.860 20 C -0.430 4.430 21 H 0.088 0.912 22 C 0.071 3.929 23 N -0.764 5.764 24 Si 0.917 3.083 25 H -0.256 1.256 26 H -0.267 1.267 27 H -0.270 1.270 28 C -0.236 4.236 29 C 0.007 3.993 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.401 0.599 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.172 0.828 39 H 0.413 0.587 40 H 0.102 0.898 41 H 0.125 0.875 42 H 0.289 0.711 43 H 0.100 0.900 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.133 -11.711 10.738 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.006 4.006 3 N -0.368 5.368 4 C 0.122 3.878 5 C -0.208 4.208 6 C -0.058 4.058 7 C -0.075 4.075 8 C -0.046 4.046 9 N -0.113 5.113 10 C -0.101 4.101 11 C -0.002 4.002 12 N -0.806 5.806 13 S 2.785 3.215 14 O -0.965 6.965 15 O -0.965 6.965 16 C -0.881 4.881 17 C -0.036 4.036 18 C -0.203 4.203 19 C 0.137 3.863 20 C -0.458 4.458 21 H 0.106 0.894 22 C -0.151 4.151 23 N -0.386 5.386 24 Si 0.740 3.260 25 H -0.179 1.179 26 H -0.192 1.192 27 H -0.195 1.195 28 C -0.256 4.256 29 C -0.013 4.013 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.236 0.764 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.189 0.811 39 H 0.248 0.752 40 H 0.120 0.880 41 H 0.142 0.858 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.460 -10.511 10.999 15.602 hybrid contribution -1.357 -0.489 -1.287 1.933 sum -4.817 -10.999 9.712 15.444 Atomic orbital electron populations 1.21990 0.94518 1.03129 1.02857 1.21355 0.94679 0.83068 1.01488 1.44664 1.03223 1.07766 1.81097 1.17847 0.84570 0.91972 0.93403 1.20337 0.91933 0.97746 1.10809 1.20833 0.95092 0.94695 0.95135 1.15500 0.84469 0.93768 1.13739 1.25592 0.92543 0.93399 0.93033 1.81202 1.12197 1.07542 1.10319 1.21831 0.90347 1.01720 0.96173 1.16552 0.88555 0.85593 1.09456 1.53650 1.29168 1.32674 1.65118 1.01676 0.73023 0.71988 0.74793 1.93409 1.39839 1.80133 1.83089 1.93514 1.51823 1.63501 1.87704 1.28873 1.01636 1.37445 1.20128 1.20212 0.94640 0.94264 0.94438 1.21375 0.98366 1.06936 0.93583 1.17867 0.90863 0.85016 0.92603 1.20019 1.09289 1.24201 0.92245 0.89355 1.26162 0.93696 0.93386 1.01887 1.69823 1.15267 1.16616 1.36905 0.86094 0.79631 0.80305 0.79946 1.17932 1.19230 1.19452 1.21018 0.97597 1.12671 0.94354 1.20154 0.93750 0.92054 0.95345 0.92016 0.91637 0.90838 0.91712 0.91951 0.76387 0.84895 0.85095 0.81066 0.75186 0.88007 0.85762 0.89958 0.88162 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.03 37.16 0.37 -0.58 16 2 C 0.12 0.81 5.62 -4.04 -0.02 0.79 16 3 N -0.74 -6.79 5.70 -58.46 -0.33 -7.12 16 4 C 0.23 2.61 6.67 -83.56 -0.56 2.05 16 5 C -0.18 -1.82 9.28 -39.48 -0.37 -2.19 16 6 C -0.04 -0.37 9.74 -39.17 -0.38 -0.75 16 7 C -0.07 -0.90 5.74 -106.81 -0.61 -1.51 16 8 C 0.27 4.00 15.32 -22.47 -0.34 3.66 16 9 N -0.44 -7.33 18.54 41.84 0.78 -6.55 16 10 C -0.08 -1.11 8.51 -38.99 -0.33 -1.44 16 11 C 0.10 1.32 6.31 -83.56 -0.53 0.79 16 12 N -1.06 -14.27 5.45 32.51 0.18 -14.09 16 13 S 2.68 48.31 5.55 -107.50 -0.60 47.71 16 14 O -0.97 -19.10 14.08 -57.17 -0.81 -19.90 16 15 O -0.97 -19.52 17.26 -57.17 -0.99 -20.51 16 16 C -0.78 -16.44 5.88 -39.29 -0.23 -16.67 16 17 C -0.02 -0.33 9.49 -39.66 -0.38 -0.71 16 18 C -0.18 -4.39 8.70 -38.87 -0.34 -4.73 16 19 C 0.14 3.46 5.59 -106.82 -0.60 2.86 16 20 C -0.43 -10.32 9.06 -37.74 -0.34 -10.66 16 21 H 0.09 2.01 7.90 -52.48 -0.41 1.60 16 22 C 0.07 1.60 5.18 -17.34 -0.09 1.51 16 23 N -0.76 -17.86 10.84 55.55 0.60 -17.26 16 24 Si 0.92 16.62 29.59 -169.99 -5.03 11.59 16 25 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 26 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 27 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 28 C -0.24 -5.46 9.80 -38.87 -0.38 -5.85 16 29 C 0.01 0.16 9.49 -39.66 -0.38 -0.22 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.46 7.94 -51.93 -0.41 0.05 16 34 H 0.06 0.36 7.94 -51.93 -0.41 -0.05 16 35 H 0.40 3.47 7.08 -40.82 -0.29 3.18 16 36 H 0.13 0.97 6.70 -52.49 -0.35 0.62 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.17 2.80 5.09 -52.49 -0.27 2.53 16 39 H 0.41 4.27 7.87 -34.47 -0.27 4.00 16 40 H 0.10 2.07 7.60 -52.49 -0.40 1.67 16 41 H 0.12 3.04 6.06 -52.49 -0.32 2.72 16 42 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 43 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 44 H 0.10 2.05 7.15 -52.49 -0.38 1.68 16 LS Contribution 388.90 15.07 5.86 5.86 Total: -1.00 -30.43 388.90 -10.60 -41.03 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -4.76 Total: 12.90 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: -5.50 Total: -33.65 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 1.22 Total: -45.03 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -1.79 Total: -40.41 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.03 Total: 11.59 kcal Atomic # 16 Polarization: 48.31 SS G_CDS: -0.60 Total: 47.71 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.43 -10.60 -41.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089977550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.915 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds