Wall clock time and date at job start Tue Mar 31 2020 05:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99640 * 2 1 4 4 H 1.48502 * 109.47302 * 269.99862 * 3 2 1 5 5 H 1.48497 * 109.47573 * 29.99938 * 3 2 1 6 6 H 1.48502 * 109.47040 * 150.00021 * 3 2 1 7 7 C 1.37870 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00055 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00204 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47180 * 180.02562 * 9 7 2 11 11 C 1.46894 * 111.00032 * 173.95246 * 10 9 7 12 12 C 1.50705 * 109.47284 * 192.07020 * 11 10 9 13 13 C 1.38267 * 119.97777 * 270.68464 * 12 11 10 14 14 C 1.38214 * 120.05912 * 179.76667 * 13 12 11 15 15 C 1.38307 * 120.01512 * 0.50405 * 14 13 12 16 16 Br 1.89096 * 120.02286 * 179.77059 * 15 14 13 17 17 C 1.38528 * 119.95291 * 359.74874 * 15 14 13 18 18 F 1.35095 * 120.02752 * 180.02562 * 17 15 14 19 19 C 1.38188 * 119.97518 * 90.95666 * 12 11 10 20 20 C 1.46905 * 110.99929 * 297.90889 * 10 9 7 21 21 C 1.53001 * 109.46839 * 291.43772 * 20 10 9 22 22 H 1.08997 * 110.75174 * 309.02008 * 21 20 10 23 23 C 1.55566 * 110.83670 * 185.34069 * 21 20 10 24 24 C 1.54949 * 100.82357 * 207.68801 * 23 21 20 25 25 O 1.43641 * 105.22381 * 36.44512 * 24 23 21 26 26 C 1.43240 * 109.97321 * 335.52070 * 25 24 23 27 27 H 0.97002 * 120.00137 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47056 * 60.00420 * 9 7 2 29 29 H 1.09000 * 109.47376 * 300.00321 * 9 7 2 30 30 H 1.09000 * 109.46894 * 312.06742 * 11 10 9 31 31 H 1.08998 * 109.47182 * 72.06721 * 11 10 9 32 32 H 1.08002 * 119.96681 * 0.02562 * 13 12 11 33 33 H 1.07992 * 119.99619 * 180.27910 * 14 13 12 34 34 H 1.07998 * 120.01083 * 0.02562 * 19 12 11 35 35 H 1.08997 * 109.47025 * 171.44260 * 20 10 9 36 36 H 1.09000 * 109.47147 * 51.43903 * 20 10 9 37 37 H 1.08996 * 111.22021 * 89.79178 * 23 21 20 38 38 H 1.08993 * 111.13366 * 325.54754 * 23 21 20 39 39 H 1.08997 * 110.30805 * 277.47475 * 24 23 21 40 40 H 1.09005 * 110.30424 * 155.41232 * 24 23 21 41 41 H 1.08999 * 109.83111 * 121.22634 * 26 25 24 42 42 H 1.09000 * 109.83227 * 242.19989 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5112 -4.9020 0.1439 12 6 2.5167 -5.9858 0.4364 13 6 3.1143 -6.6728 -0.6042 14 6 4.0403 -7.6638 -0.3380 15 6 4.3625 -7.9763 0.9702 16 35 5.6246 -9.3365 1.3346 17 6 3.7603 -7.2919 2.0132 18 9 4.0743 -7.5956 3.2916 19 6 2.8368 -6.2960 1.7444 20 6 3.0356 -3.5987 -1.2125 21 6 2.1692 -3.9323 -2.4287 22 1 1.5963 -4.8434 -2.2565 23 6 3.0403 -4.0551 -3.7117 24 6 2.0109 -3.6618 -4.8010 25 8 1.2051 -2.6330 -4.2046 26 6 1.2352 -2.7536 -2.7776 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 0.7963 -4.8388 0.9643 31 1 0.9834 -5.1359 -0.7806 32 1 2.8602 -6.4321 -1.6259 33 1 4.5097 -8.1967 -1.1516 34 1 2.3661 -5.7623 2.5568 35 1 3.8306 -4.3385 -1.1189 36 1 3.4737 -2.6086 -1.3390 37 1 3.3915 -5.0771 -3.8538 38 1 3.8749 -3.3544 -3.6886 39 1 1.3936 -4.5202 -5.0657 40 1 2.5224 -3.2778 -5.6837 41 1 1.6198 -1.8339 -2.3369 42 1 0.2316 -2.9534 -2.4022 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095407293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:42 Heat of formation + Delta-G solvation = -47.981082 kcal Electronic energy + Delta-G solvation = -26120.194160 eV Core-core repulsion = 22254.367798 eV Total energy + Delta-G solvation = -3865.826363 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 371.064 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.01553 -39.94405 -38.92670 -36.70363 -33.17974 -32.61669 -31.65397 -30.76966 -30.03863 -28.73966 -27.30061 -26.08191 -24.10717 -22.98743 -22.04036 -21.59681 -21.03982 -19.47488 -17.26482 -16.80909 -16.51255 -16.37586 -15.96406 -15.80625 -15.53248 -15.00799 -14.64375 -14.38884 -14.24057 -13.92715 -13.51529 -13.29740 -12.97858 -12.72155 -12.68312 -12.35349 -12.03594 -11.61712 -11.51945 -11.41324 -11.24579 -11.12080 -10.94779 -10.88460 -10.73081 -10.63399 -10.47765 -10.32515 -10.06885 -9.91903 -9.32876 -9.02474 -8.97511 -8.68925 -8.48195 -7.36502 -6.11586 -4.12917 0.82717 1.04207 1.37516 3.28209 3.32906 3.35641 3.38913 3.99146 4.31317 4.36541 4.52420 4.66348 4.71601 4.93005 5.02777 5.08898 5.16074 5.22852 5.25716 5.45209 5.47544 5.49297 5.61957 5.74262 5.80109 5.82287 5.89369 5.92005 6.02943 6.04392 6.15801 6.26593 6.33885 6.45223 6.64629 6.67736 6.88802 7.13732 7.20261 7.50850 7.67157 7.92219 8.03984 8.38575 8.93549 9.51469 10.98537 Molecular weight = 371.06amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.002828 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.694458 B = 9899.712954 C =11312.271553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.173 3.827 10 N -0.525 5.525 11 C 0.076 3.924 12 C -0.013 4.013 13 C -0.122 4.122 14 C -0.065 4.065 15 C -0.139 4.139 16 Br -0.043 7.043 17 C 0.125 3.875 18 F -0.128 7.128 19 C -0.129 4.129 20 C 0.069 3.931 21 C -0.158 4.158 22 H 0.077 0.923 23 C -0.148 4.148 24 C 0.051 3.949 25 O -0.393 6.393 26 C 0.052 3.948 27 H 0.263 0.737 28 H 0.018 0.982 29 H 0.029 0.971 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.877 -18.598 -2.422 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.549 4.549 8 H 0.081 0.919 9 C 0.048 3.952 10 N -0.247 5.247 11 C -0.052 4.052 12 C -0.014 4.014 13 C -0.141 4.141 14 C -0.085 4.085 15 C -0.220 4.220 16 Br 0.042 6.958 17 C 0.104 3.896 18 F -0.106 7.106 19 C -0.149 4.149 20 C -0.060 4.060 21 C -0.179 4.179 22 H 0.095 0.905 23 C -0.186 4.186 24 C -0.026 4.026 25 O -0.313 6.313 26 C -0.023 4.023 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.047 0.953 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.164 0.836 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.126 0.874 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.380 -18.751 -1.892 20.625 hybrid contribution -0.232 0.844 -0.337 0.938 sum 8.148 -17.906 -2.229 19.799 Atomic orbital electron populations 1.69932 1.05977 1.26985 1.50199 1.24928 0.94808 0.99172 0.95185 0.86576 0.79889 0.83325 0.78180 1.20589 1.21245 1.19800 1.21056 0.93383 0.89689 1.50802 0.91900 1.20230 0.90568 0.86970 0.97395 1.62398 1.25214 1.01117 1.35997 1.21220 0.93470 0.89127 1.01351 1.19990 0.95359 0.94256 0.91767 1.21208 0.97095 0.95961 0.99885 1.20927 0.96725 0.96892 0.93921 1.21820 1.03068 1.01327 0.95744 1.96703 1.55198 1.47997 1.95884 1.17377 0.97329 0.96664 0.78218 1.91537 1.91557 1.92091 1.35445 1.21086 0.98310 0.96912 0.98552 1.22184 0.95122 1.02736 0.85931 1.23540 0.98114 0.99273 0.96936 0.90468 1.23282 0.98786 1.01902 0.94622 1.23234 0.91847 0.91242 0.96243 1.88426 1.70267 1.52036 1.20527 1.23857 0.99049 1.00202 0.79207 0.92774 0.96498 0.95282 0.89840 0.93399 0.84716 0.84405 0.83600 0.92150 0.89014 0.90735 0.90236 0.93203 0.90631 0.87352 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.80 13.29 55.43 0.74 -24.06 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.51 -12.94 7.01 -34.44 -0.24 -13.18 16 8 H 0.06 1.60 6.88 -52.48 -0.36 1.24 16 9 C 0.17 3.91 4.17 -4.97 -0.02 3.89 16 10 N -0.52 -9.62 4.71 -237.51 -1.12 -10.74 16 11 C 0.08 1.14 4.86 -4.98 -0.02 1.12 16 12 C -0.01 -0.16 4.96 -104.63 -0.52 -0.68 16 13 C -0.12 -1.38 8.08 -39.58 -0.32 -1.70 16 14 C -0.06 -0.69 9.79 -39.56 -0.39 -1.08 16 15 C -0.14 -1.68 6.23 -39.45 -0.25 -1.93 16 16 Br -0.04 -0.47 33.28 -68.01 -2.26 -2.74 16 17 C 0.13 1.66 7.27 -39.39 -0.29 1.37 16 18 F -0.13 -1.76 16.73 2.25 0.04 -1.73 16 19 C -0.13 -1.71 9.68 -39.52 -0.38 -2.09 16 20 C 0.07 1.13 4.32 -3.82 -0.02 1.12 16 21 C -0.16 -2.36 2.19 -88.53 -0.19 -2.56 16 22 H 0.08 1.07 4.93 -51.93 -0.26 0.81 16 23 C -0.15 -1.84 6.64 -24.34 -0.16 -2.00 16 24 C 0.05 0.70 7.77 38.19 0.30 0.99 16 25 O -0.39 -7.28 11.36 -35.23 -0.40 -7.68 16 26 C 0.05 0.98 5.42 37.89 0.21 1.18 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.02 0.41 3.93 -51.93 -0.20 0.20 16 29 H 0.03 0.73 7.99 -51.93 -0.41 0.31 16 30 H 0.08 1.26 7.88 -51.93 -0.41 0.85 16 31 H 0.05 0.69 5.56 -51.93 -0.29 0.40 16 32 H 0.14 1.35 6.61 -52.49 -0.35 1.00 16 33 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.15 1.87 8.06 -52.49 -0.42 1.44 16 35 H 0.06 0.90 6.48 -51.93 -0.34 0.56 16 36 H 0.09 1.74 6.15 -51.93 -0.32 1.42 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.11 2.42 5.56 -51.93 -0.29 2.13 16 42 H 0.07 1.32 6.78 -51.93 -0.35 0.97 16 LS Contribution 349.73 15.07 5.27 5.27 Total: -1.00 -27.50 349.73 -10.40 -37.90 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.25 Total: 2.06 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -2.39 Total: -14.02 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.38 Total: -34.80 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.40 Total: -7.68 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.26 Total: -2.74 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.50 -10.40 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095407293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.079 kcal (2) G-P(sol) polarization free energy of solvation -27.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds