Wall clock time and date at job start Tue Mar 31 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47476 * 2 1 4 4 O 1.33941 * 125.61794 * 270.27284 * 3 2 1 5 5 C 1.34916 * 109.38275 * 180.14829 * 4 3 2 6 6 C 1.46623 * 125.98742 * 179.88193 * 5 4 3 7 7 O 1.21711 * 120.00547 * 173.55627 * 6 5 4 8 8 N 1.34785 * 119.99962 * 353.82986 * 6 5 4 9 9 C 1.46494 * 119.99724 * 353.35058 * 8 6 5 10 10 C 1.50703 * 109.47404 * 87.38201 * 9 8 6 11 11 H 1.08001 * 119.99646 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99738 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99532 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00249 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47094 * 90.00567 * 14 12 10 16 16 H 1.48507 * 109.46862 * 210.00028 * 14 12 10 17 17 H 1.48494 * 109.47271 * 330.00060 * 14 12 10 18 18 C 1.40010 * 119.99835 * 173.34571 * 8 6 5 19 19 C 1.38865 * 120.01915 * 171.91770 * 18 8 6 20 20 C 1.38125 * 120.03575 * 179.82313 * 19 18 8 21 21 C 1.38714 * 120.16404 * 0.51698 * 20 19 18 22 22 C 1.38992 * 119.93421 * 359.65038 * 21 20 19 23 23 C 1.38650 * 119.89060 * 0.11981 * 22 21 20 24 24 O 1.36119 * 120.78488 * 180.26606 * 22 21 20 25 25 C 1.43172 * 116.72685 * 342.79993 * 24 22 21 26 26 C 1.53466 * 108.24595 * 46.19313 * 25 24 22 27 27 O 1.36208 * 119.31801 * 179.56213 * 21 20 19 28 28 C 1.36563 * 108.02513 * 359.62116 * 5 4 3 29 29 C 1.35137 * 125.61326 * 90.00035 * 3 2 1 30 30 C 1.50699 * 126.44040 * 0.02562 * 29 3 2 31 31 H 1.08989 * 109.47064 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46799 * 299.99675 * 1 2 3 33 33 H 1.08996 * 109.46598 * 59.99228 * 1 2 3 34 34 H 1.08997 * 109.47070 * 240.00179 * 2 1 3 35 35 H 1.09000 * 109.47290 * 120.00200 * 2 1 3 36 36 H 1.09003 * 109.46878 * 207.38078 * 9 8 6 37 37 H 1.09003 * 109.47328 * 327.37934 * 9 8 6 38 38 H 0.97002 * 119.99342 * 179.97438 * 13 12 10 39 39 H 1.08001 * 119.98327 * 0.07113 * 19 18 8 40 40 H 1.07996 * 119.91841 * 180.26504 * 20 19 18 41 41 H 1.08000 * 119.99341 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.70988 * 165.88157 * 25 24 22 43 43 H 1.08998 * 109.71130 * 286.50523 * 25 24 22 44 44 H 1.09001 * 109.71245 * 59.92153 * 26 25 24 45 45 H 1.09004 * 109.71083 * 180.55108 * 26 25 24 46 46 H 1.08001 * 126.64859 * 180.19778 * 28 5 4 47 47 H 1.09000 * 109.47397 * 269.99981 * 30 29 3 48 48 H 1.09002 * 109.47547 * 30.00126 * 30 29 3 49 49 H 1.08999 * 109.47063 * 150.00091 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2876 2.1579 -1.0888 5 6 2.7243 3.3775 -0.7116 6 6 3.1099 4.4703 -1.6099 7 8 3.3775 5.5668 -1.1544 8 7 3.1628 4.2622 -2.9405 9 6 2.9783 2.9122 -3.4785 10 6 1.5093 2.6537 -3.6940 11 1 0.7855 3.4185 -3.4537 12 6 1.0894 1.4409 -4.1979 13 7 -0.1926 1.2152 -4.3854 14 14 2.3414 0.1185 -4.6141 15 1 2.5716 -0.7377 -3.4228 16 1 1.8281 -0.7150 -5.7309 17 1 3.6194 0.7568 -5.0195 18 6 3.3941 5.3362 -3.8084 19 6 3.6158 5.1026 -5.1592 20 6 3.8403 6.1622 -6.0163 21 6 3.8558 7.4611 -5.5298 22 6 3.6377 7.6979 -4.1777 23 6 3.4076 6.6345 -3.3183 24 8 3.6438 8.9659 -3.6826 25 6 4.2446 9.9743 -4.5023 26 6 3.7247 9.8011 -5.9357 27 8 4.0878 8.4924 -6.3888 28 6 2.7386 3.4177 0.6533 29 6 2.2948 2.1627 1.0986 30 6 2.1405 1.7247 2.5323 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3632 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.5058 2.8244 -4.4284 37 1 3.3760 2.1824 -2.7733 38 1 -0.4880 0.3621 -4.7403 39 1 3.6087 4.0922 -5.5404 40 1 4.0083 5.9786 -7.0672 41 1 3.2383 6.8166 -2.2673 42 1 3.9723 10.9616 -4.1293 43 1 5.3287 9.8616 -4.4883 44 1 2.6399 9.9069 -5.9487 45 1 4.1757 10.5527 -6.5837 46 1 3.0345 4.2531 1.2706 47 1 1.1343 1.9614 2.8783 48 1 2.3058 0.6497 2.6037 49 1 2.8698 2.2463 3.1520 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095415196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:58 Heat of formation + Delta-G solvation = -43.645485 kcal Electronic energy + Delta-G solvation = -34780.398316 eV Core-core repulsion = 30255.080799 eV Total energy + Delta-G solvation = -4525.317517 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 371.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.28775 -41.02940 -39.80807 -37.20403 -36.96476 -35.29656 -34.37576 -32.95489 -32.59532 -30.79806 -30.42768 -29.37583 -28.25012 -27.76403 -26.71626 -24.72619 -24.00705 -23.05199 -22.22776 -21.56613 -20.68698 -19.96468 -19.03030 -18.20841 -17.41589 -17.20389 -17.06711 -16.38044 -16.09834 -15.81093 -15.27486 -15.18477 -14.78011 -14.72791 -14.37195 -14.21942 -14.04887 -13.90827 -13.66591 -13.24806 -13.11977 -13.02370 -12.96456 -12.70157 -12.60383 -12.39053 -12.29510 -12.17020 -11.90342 -11.76432 -11.55822 -11.44824 -11.04646 -10.99669 -10.97537 -10.73933 -10.65957 -10.52927 -10.32988 -9.72409 -9.29730 -9.22061 -8.95495 -8.72277 -8.13615 -7.97920 -7.08603 -6.22154 -4.22293 1.30128 1.71402 1.87901 2.65820 3.01081 3.12773 3.20976 3.21947 3.24256 3.34355 3.58738 3.64592 4.22107 4.23738 4.31941 4.78560 4.82735 4.89497 4.96290 5.05420 5.07344 5.11094 5.22722 5.30953 5.44011 5.47541 5.48990 5.58673 5.63652 5.65565 5.77413 5.79785 5.91264 5.97317 6.01092 6.07442 6.11350 6.22973 6.25953 6.33658 6.47311 6.56376 6.57528 6.60122 6.68657 6.80833 6.84870 7.13708 7.32097 7.34045 7.51303 7.75199 7.78657 8.29790 8.47906 8.81998 9.35025 10.90406 Molecular weight = 371.16amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.003344 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.279377 B = 8370.881920 C =10361.642260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.046 4.046 3 C 0.024 3.976 4 O -0.103 6.103 5 C -0.065 4.065 6 C 0.603 3.397 7 O -0.521 6.521 8 N -0.519 5.519 9 C 0.197 3.803 10 C -0.525 4.525 11 H 0.079 0.921 12 C 0.086 3.914 13 N -0.886 5.886 14 Si 0.861 3.139 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.265 1.265 18 C 0.181 3.819 19 C -0.139 4.139 20 C -0.090 4.090 21 C 0.011 3.989 22 C 0.068 3.932 23 C -0.163 4.163 24 O -0.306 6.306 25 C 0.021 3.979 26 C 0.022 3.978 27 O -0.312 6.312 28 C -0.127 4.127 29 C -0.207 4.207 30 C -0.075 4.075 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.266 0.734 39 H 0.144 0.856 40 H 0.134 0.866 41 H 0.184 0.816 42 H 0.116 0.884 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.115 0.885 46 H 0.153 0.847 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.091 5.582 4.749 10.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.083 4.083 3 C -0.030 4.030 4 O 0.004 5.996 5 C -0.117 4.117 6 C 0.395 3.605 7 O -0.403 6.403 8 N -0.237 5.237 9 C 0.078 3.922 10 C -0.563 4.563 11 H 0.097 0.903 12 C -0.117 4.117 13 N -0.524 5.524 14 Si 0.687 3.313 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.189 1.189 18 C 0.085 3.915 19 C -0.160 4.160 20 C -0.109 4.109 21 C -0.034 4.034 22 C 0.023 3.977 23 C -0.183 4.183 24 O -0.220 6.220 25 C -0.055 4.055 26 C -0.054 4.054 27 O -0.227 6.227 28 C -0.148 4.148 29 C -0.208 4.208 30 C -0.132 4.132 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.161 0.839 40 H 0.152 0.848 41 H 0.200 0.800 42 H 0.134 0.866 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.133 0.867 46 H 0.171 0.829 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.046 5.880 4.616 10.273 hybrid contribution 0.406 -0.542 -0.387 0.780 sum 7.452 5.338 4.229 10.095 Atomic orbital electron populations 1.21750 0.93438 1.02073 1.03400 1.20125 0.96988 0.87595 1.03617 1.22711 1.00690 0.95107 0.84533 1.84660 1.61995 1.20784 1.32171 1.21568 1.10052 0.86619 0.93510 1.16761 0.77071 0.85603 0.81070 1.90533 1.50847 1.22740 1.76150 1.45536 1.63873 1.09730 1.04590 1.20282 0.99742 0.76710 0.95495 1.21078 0.89488 1.01679 1.44051 0.90339 1.24687 0.94878 0.97483 0.94681 1.69882 1.13762 1.24260 1.44497 0.87097 0.82354 0.82893 0.78937 1.19641 1.20790 1.18947 1.17461 0.97751 0.86410 0.89852 1.20785 1.03947 0.99885 0.91345 1.20102 1.02197 0.88571 1.00033 1.18811 1.08214 0.88736 0.87635 1.18664 1.03736 0.84881 0.90407 1.21540 1.05295 0.88184 1.03308 1.86308 1.76470 1.14551 1.44677 1.23554 0.98359 0.92249 0.91290 1.23525 1.01234 0.84384 0.96284 1.86271 1.81008 1.14192 1.41206 1.21625 1.02304 0.98174 0.92675 1.20039 1.09874 0.94632 0.96278 1.20100 1.01715 1.00771 0.90585 0.92058 0.92624 0.90700 0.89896 0.89374 0.93577 0.93615 0.92401 0.83892 0.84792 0.79963 0.86578 0.90859 0.90840 0.86667 0.82940 0.91796 0.91932 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.90 37.16 0.37 -1.79 16 2 C -0.05 -0.68 6.26 -27.88 -0.17 -0.85 16 3 C 0.02 0.42 6.57 -35.41 -0.23 0.19 16 4 O -0.10 -2.18 6.46 4.96 0.03 -2.14 16 5 C -0.06 -1.32 6.66 -36.81 -0.25 -1.57 16 6 C 0.60 13.07 7.52 -12.87 -0.10 12.97 16 7 O -0.52 -11.42 13.39 5.18 0.07 -11.35 16 8 N -0.52 -11.37 2.69 -116.20 -0.31 -11.68 16 9 C 0.20 4.46 3.48 -5.20 -0.02 4.44 16 10 C -0.52 -13.69 8.50 -34.44 -0.29 -13.98 16 11 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 12 C 0.09 2.27 5.47 -17.82 -0.10 2.17 16 13 N -0.89 -24.93 13.96 55.43 0.77 -24.16 16 14 Si 0.86 19.31 27.47 -169.99 -4.67 14.64 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 18 C 0.18 3.77 6.48 -83.69 -0.54 3.23 16 19 C -0.14 -2.63 9.28 -39.39 -0.37 -3.00 16 20 C -0.09 -1.53 9.95 -39.45 -0.39 -1.92 16 21 C 0.01 0.19 6.49 -39.13 -0.25 -0.07 16 22 C 0.07 1.26 6.49 -39.15 -0.25 1.00 16 23 C -0.16 -3.32 8.88 -39.23 -0.35 -3.67 16 24 O -0.31 -5.01 10.42 -32.90 -0.34 -5.36 16 25 C 0.02 0.24 7.26 37.40 0.27 0.51 16 26 C 0.02 0.24 7.26 37.40 0.27 0.51 16 27 O -0.31 -4.69 10.42 -33.19 -0.35 -5.04 16 28 C -0.13 -2.23 10.58 -39.39 -0.42 -2.65 16 29 C -0.21 -3.28 6.14 -104.93 -0.64 -3.92 16 30 C -0.07 -0.87 10.17 36.01 0.37 -0.50 16 31 H 0.06 0.75 8.14 -51.94 -0.42 0.32 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.09 0.99 7.13 -51.93 -0.37 0.62 16 36 H 0.05 1.00 4.87 -51.93 -0.25 0.75 16 37 H 0.05 1.03 5.29 -51.93 -0.27 0.76 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.14 2.64 5.95 -52.49 -0.31 2.33 16 40 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 41 H 0.18 3.94 4.72 -55.15 -0.26 3.68 16 42 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.15 2.39 8.06 -52.49 -0.42 1.97 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.62 7.13 -51.93 -0.37 0.25 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 397.88 15.07 6.00 6.00 Total: -1.00 -31.27 397.88 -8.40 -39.68 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.50 Total: 8.31 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -3.10 Total: -8.89 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.46 Total: -35.84 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.59 Total: -23.89 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.67 Total: 14.64 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.27 -8.40 -39.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095415196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.969 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds