Wall clock time and date at job start Tue Mar 31 2020 05:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38210 * 119.99910 * 2 1 4 4 C 1.38425 * 119.99982 * 179.76856 * 3 2 1 5 5 F 1.35102 * 119.99904 * 180.29506 * 4 3 2 6 6 C 1.38470 * 119.99992 * 0.52921 * 4 3 2 7 7 S 1.76205 * 119.99933 * 179.74416 * 6 4 3 8 8 O 1.42099 * 106.40101 * 181.43536 * 7 6 4 9 9 O 1.42092 * 106.40100 * 48.51517 * 7 6 4 10 10 N 1.65597 * 107.21765 * 294.97463 * 7 6 4 11 11 C 1.39997 * 120.00008 * 296.05129 * 10 7 6 12 12 C 1.40430 * 125.97818 * 174.51711 * 11 10 7 13 13 C 1.35245 * 107.86264 * 179.97438 * 12 11 10 14 14 N 1.34954 * 107.86217 * 0.26164 * 13 12 11 15 15 C 1.46501 * 125.97146 * 179.70259 * 14 13 12 16 16 C 1.53002 * 109.47103 * 124.99769 * 15 14 13 17 17 C 1.50706 * 109.46862 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00336 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00012 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99476 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00228 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47544 * 90.00032 * 21 19 17 23 23 H 1.48501 * 109.47097 * 210.00292 * 21 19 17 24 24 H 1.48500 * 109.47043 * 329.99874 * 21 19 17 25 25 N 1.31225 * 125.97619 * 354.47161 * 11 10 7 26 26 C 1.38159 * 119.99817 * 359.47163 * 6 4 3 27 27 C 1.38430 * 120.00160 * 180.02562 * 2 1 3 28 28 F 1.35098 * 119.99966 * 359.97438 * 27 2 1 29 29 H 1.09005 * 109.46644 * 269.97375 * 1 2 3 30 30 H 1.08995 * 109.47579 * 29.97793 * 1 2 3 31 31 H 1.09001 * 109.47010 * 149.98291 * 1 2 3 32 32 H 1.08003 * 119.99691 * 0.04639 * 3 2 1 33 33 H 0.96994 * 120.00645 * 116.05049 * 10 7 6 34 34 H 1.08006 * 126.06474 * 359.97438 * 12 11 10 35 35 H 1.08002 * 126.06653 * 180.02562 * 13 12 11 36 36 H 1.08999 * 109.47232 * 244.99984 * 15 14 13 37 37 H 1.09007 * 109.47261 * 4.99523 * 15 14 13 38 38 H 1.08997 * 109.47245 * 299.99425 * 16 15 14 39 39 H 1.08997 * 109.46950 * 60.00501 * 16 15 14 40 40 H 0.97006 * 119.99641 * 179.97438 * 20 19 17 41 41 H 1.08008 * 119.99930 * 180.27550 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1969 0.0000 4 6 3.5823 1.1970 0.0048 5 9 4.2577 2.3670 0.0109 6 6 4.2747 -0.0022 -0.0014 7 16 6.0367 -0.0021 -0.0020 8 8 6.4380 -1.3646 -0.0431 9 8 6.4383 0.8958 1.0234 10 7 6.5263 0.6729 -1.4327 11 6 6.2245 0.0404 -2.6447 12 6 6.4805 0.5506 -3.9277 13 6 6.0433 -0.3571 -4.8299 14 7 5.5245 -1.4005 -4.1493 15 6 4.9324 -2.6038 -4.7390 16 6 5.6353 -3.8435 -4.1822 17 6 5.0266 -5.0813 -4.7893 18 1 4.2195 -4.9926 -5.5015 19 6 5.5008 -6.3270 -4.4365 20 7 6.4839 -6.4349 -3.5697 21 14 4.7468 -7.8611 -5.1896 22 1 5.4756 -8.2106 -6.4353 23 1 4.8468 -8.9862 -4.2255 24 1 3.3186 -7.6063 -5.5066 25 7 5.6537 -1.1334 -2.7804 26 6 3.5839 -1.1987 -0.0014 27 6 2.1992 -1.1988 -0.0005 28 9 1.5237 -2.3688 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6580 2.1322 0.0008 33 1 7.0222 1.5065 -1.4312 34 1 6.9441 1.4995 -4.1538 35 1 6.0963 -0.2619 -5.9045 36 1 3.8717 -2.6456 -4.4915 37 1 5.0518 -2.5742 -5.8221 38 1 6.6959 -3.8018 -4.4298 39 1 5.5157 -3.8732 -3.0992 40 1 6.8173 -7.3113 -3.3211 41 1 4.1240 -2.1340 -0.0018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095417499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:14 Heat of formation + Delta-G solvation = -55.874746 kcal Electronic energy + Delta-G solvation = -31842.496796 eV Core-core repulsion = 27101.631976 eV Total energy + Delta-G solvation = -4740.864820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.090 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.50684 -49.08837 -40.91705 -39.27764 -37.27646 -35.94735 -35.63114 -33.74871 -33.48181 -31.82379 -30.56555 -29.83374 -28.51617 -27.87844 -24.82021 -23.56139 -22.59467 -22.02223 -21.24643 -20.44174 -19.49507 -18.31967 -17.86095 -17.65164 -17.56366 -17.10028 -16.37945 -16.26646 -15.91948 -15.66288 -15.37847 -15.02340 -14.82499 -14.67989 -14.46970 -14.33631 -13.73461 -13.61731 -13.57916 -13.27696 -13.13570 -13.02530 -12.55365 -12.36465 -12.29212 -12.17862 -12.15825 -12.03491 -11.93937 -11.81295 -11.30762 -11.02458 -10.94827 -10.66322 -10.40641 -10.06513 -9.75498 -9.70002 -9.30139 -8.94072 -8.72120 -8.42896 -8.01569 -6.06151 -4.12565 0.01306 0.31301 0.65149 2.23238 2.41184 2.78933 2.98540 3.15974 3.28084 3.35191 3.37326 3.53981 3.59681 3.84139 4.01256 4.26308 4.39208 4.52582 4.65923 4.74874 4.97151 5.02840 5.05651 5.14643 5.29482 5.33013 5.41637 5.55229 5.57351 5.64424 5.75365 5.80183 5.90605 6.00576 6.07058 6.37684 6.45285 6.64089 6.97764 7.33841 7.56827 7.68250 7.93168 8.01175 8.23809 8.93675 9.52082 11.04566 Molecular weight = 371.09amu Principal moments of inertia in cm(-1) A = 0.009116 B = 0.003502 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3070.803324 B = 7993.343152 C = 9373.605890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.038 4.038 3 C -0.152 4.152 4 C 0.188 3.812 5 F -0.119 7.119 6 C -0.686 4.686 7 S 2.694 3.306 8 O -0.910 6.910 9 O -0.945 6.945 10 N -1.010 6.010 11 C 0.284 3.716 12 C -0.294 4.294 13 C 0.072 3.928 14 N -0.333 5.333 15 C 0.131 3.869 16 C 0.014 3.986 17 C -0.531 4.531 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.884 5.884 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.273 1.273 25 N -0.299 5.299 26 C 0.000 4.000 27 C 0.071 3.929 28 F -0.124 7.124 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.153 0.847 33 H 0.434 0.566 34 H 0.146 0.854 35 H 0.176 0.824 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.022 0.978 39 H 0.038 0.962 40 H 0.263 0.737 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 19.693 4.629 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.040 4.040 3 C -0.171 4.171 4 C 0.167 3.833 5 F -0.097 7.097 6 C -0.772 4.772 7 S 2.780 3.220 8 O -0.899 6.899 9 O -0.935 6.935 10 N -0.765 5.765 11 C 0.028 3.972 12 C -0.327 4.327 13 C -0.077 4.077 14 N -0.115 5.115 15 C 0.012 3.988 16 C -0.024 4.024 17 C -0.570 4.570 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.198 1.198 25 N -0.129 5.129 26 C -0.020 4.020 27 C 0.051 3.949 28 F -0.102 7.102 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.171 0.829 33 H 0.272 0.728 34 H 0.164 0.836 35 H 0.193 0.807 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.040 0.960 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.520 17.971 5.978 20.767 hybrid contribution -0.338 0.359 -1.197 1.295 sum -8.858 18.330 4.781 20.912 Atomic orbital electron populations 1.20908 0.88768 1.04480 1.03763 1.20072 0.97705 0.91133 0.95064 1.20887 0.91715 0.99138 1.05393 1.16942 0.90302 0.79834 0.96180 1.91599 1.80009 1.45170 1.92958 1.30782 1.28515 0.97196 1.20701 1.02305 0.73324 0.74241 0.72113 1.93714 1.79002 1.32520 1.84685 1.93645 1.80944 1.66045 1.52835 1.52584 1.68187 1.37181 1.18520 1.18681 1.00303 0.92177 0.86068 1.20944 1.17919 1.04257 0.89598 1.22497 0.97900 0.88200 0.99141 1.48859 1.44619 1.16126 1.01904 1.22391 0.97855 0.81824 0.96701 1.19391 0.95856 0.88884 0.98280 1.20985 1.19208 0.90619 1.26206 0.92392 1.24991 0.94924 0.99188 0.94931 1.69992 1.25993 1.24190 1.32022 0.86546 0.79562 0.82647 0.78933 1.20605 1.21100 1.19807 1.77515 1.26278 1.12595 0.96549 1.20924 0.92709 0.98430 0.89965 1.17476 0.89865 0.81572 1.05983 1.91557 1.79702 1.45095 1.93849 0.89563 0.90087 0.89987 0.82908 0.72838 0.83604 0.80712 0.90587 0.89294 0.95960 0.94373 0.92713 0.81031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.83 36.01 0.35 -0.53 16 2 C -0.04 -0.40 5.88 -104.56 -0.62 -1.02 16 3 C -0.15 -1.52 9.68 -39.52 -0.38 -1.90 16 4 C 0.19 2.33 7.21 -39.43 -0.28 2.04 16 5 F -0.12 -1.42 16.28 2.25 0.04 -1.38 16 6 C -0.69 -9.81 5.83 -39.53 -0.23 -10.04 16 7 S 2.69 41.63 5.16 -107.50 -0.55 41.08 16 8 O -0.91 -17.58 16.14 -57.17 -0.92 -18.50 16 9 O -0.94 -15.09 17.43 -57.17 -1.00 -16.09 16 10 N -1.01 -13.68 5.91 31.39 0.19 -13.50 16 11 C 0.28 4.59 7.72 -154.54 -1.19 3.40 16 12 C -0.29 -4.01 10.83 -39.82 -0.43 -4.44 16 13 C 0.07 1.02 11.43 -17.24 -0.20 0.83 16 14 N -0.33 -6.05 3.68 -61.38 -0.23 -6.27 16 15 C 0.13 2.53 6.44 -4.04 -0.03 2.50 16 16 C 0.01 0.35 5.15 -27.88 -0.14 0.20 16 17 C -0.53 -14.41 9.11 -34.44 -0.31 -14.72 16 18 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.88 -26.62 13.29 55.43 0.74 -25.88 16 21 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 N -0.30 -5.80 11.42 31.41 0.36 -5.45 16 26 C 0.00 -0.01 9.53 -39.52 -0.38 -0.38 16 27 C 0.07 0.95 7.24 -39.42 -0.29 0.66 16 28 F -0.12 -1.73 16.47 2.25 0.04 -1.70 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.08 0.63 7.64 -51.93 -0.40 0.23 16 32 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.43 4.22 8.95 -34.47 -0.31 3.91 16 34 H 0.15 1.49 8.06 -52.48 -0.42 1.06 16 35 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.09 1.47 8.07 -51.93 -0.42 1.05 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.17 2.70 7.33 -52.48 -0.38 2.32 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -35.93 380.85 -9.28 -45.21 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.43 Total: 2.34 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -4.22 Total: -21.74 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 1.05 Total: -51.10 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -1.92 Total: -34.59 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.07 Total: -3.08 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 41.63 SS G_CDS: -0.55 Total: 41.08 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.93 -9.28 -45.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095417499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.665 kcal (2) G-P(sol) polarization free energy of solvation -35.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds