Wall clock time and date at job start Tue Mar 31 2020 05:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86791 * 120.00360 * 2 1 4 4 H 1.48509 * 109.47192 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47163 * 299.99586 * 3 2 1 6 6 H 1.48499 * 109.47340 * 59.99835 * 3 2 1 7 7 C 1.38810 * 119.99505 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99564 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00350 * 0.02562 * 7 2 1 10 10 C 1.80990 * 100.00144 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47402 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47497 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47124 * 185.59867 * 12 11 10 14 14 C 1.46836 * 110.99829 * 306.60390 * 13 12 11 15 15 C 1.50170 * 110.30991 * 287.54285 * 14 13 12 16 16 C 1.31478 * 123.05896 * 343.40375 * 15 14 13 17 17 C 1.47813 * 118.65887 * 180.02562 * 16 15 14 18 18 C 1.39553 * 120.13817 * 104.76003 * 17 16 15 19 19 C 1.37957 * 119.85153 * 179.97438 * 18 17 16 20 20 C 1.38367 * 120.14525 * 0.02562 * 19 18 17 21 21 C 1.38324 * 120.28269 * 359.70626 * 20 19 18 22 22 C 1.37996 * 120.14165 * 0.54561 * 21 20 19 23 23 C 1.50701 * 120.07006 * 179.74985 * 22 21 20 24 24 F 1.39893 * 109.47292 * 359.72823 * 23 22 21 25 25 F 1.39897 * 109.47484 * 239.72355 * 23 22 21 26 26 F 1.39905 * 109.46672 * 119.72784 * 23 22 21 27 27 C 1.50335 * 122.67880 * 359.80097 * 16 15 14 28 28 C 1.47214 * 110.99860 * 183.59792 * 13 12 11 29 29 H 0.96998 * 119.99397 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47663 * 59.99991 * 10 9 7 31 31 H 1.08998 * 109.47191 * 299.99769 * 10 9 7 32 32 H 1.09001 * 109.46724 * 59.99409 * 11 10 9 33 33 H 1.08998 * 109.46754 * 300.00031 * 11 10 9 34 34 H 1.08998 * 109.47165 * 65.59422 * 12 11 10 35 35 H 1.08999 * 109.46528 * 305.59762 * 12 11 10 36 36 H 1.09001 * 109.34415 * 47.99187 * 14 13 12 37 37 H 1.09004 * 109.33880 * 167.66805 * 14 13 12 38 38 H 1.07999 * 118.46765 * 163.16556 * 15 14 13 39 39 H 1.07995 * 120.07596 * 359.97438 * 18 17 16 40 40 H 1.08003 * 119.92579 * 179.97438 * 19 18 17 41 41 H 1.07993 * 119.86002 * 179.97438 * 20 19 18 42 42 H 1.07999 * 119.93234 * 180.30170 * 21 20 19 43 43 H 1.08995 * 109.43191 * 103.81489 * 27 16 15 44 44 H 1.09000 * 109.42953 * 223.72444 * 27 16 15 45 45 H 1.08997 * 109.63096 * 294.42577 * 28 13 12 46 46 H 1.09003 * 109.78447 * 173.94297 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 16 1.1292 -2.7281 0.0005 10 6 2.5156 -3.8915 0.0021 11 6 1.9791 -5.3244 0.0017 12 6 3.1511 -6.3079 0.0037 13 7 2.6403 -7.6786 -0.1318 14 6 1.6221 -7.9638 0.8870 15 6 2.2628 -8.1115 2.2371 16 6 3.5520 -8.3103 2.4014 17 6 4.0795 -8.4426 3.7758 18 6 4.4410 -9.6966 4.2699 19 6 4.9331 -9.8132 5.5534 20 6 5.0681 -8.6903 6.3506 21 6 4.7167 -7.4437 5.8648 22 6 4.2183 -7.3142 4.5845 23 6 3.8307 -5.9561 4.0589 24 9 4.0590 -4.9914 5.0460 25 9 2.4749 -5.9589 3.7143 26 9 4.5986 -5.6571 2.9283 27 6 4.5108 -8.4134 1.2481 28 6 3.7344 -8.6600 -0.0480 29 1 -0.4849 0.8401 -0.0004 30 1 3.1236 -3.7312 0.8925 31 1 3.1249 -3.7319 -0.8874 32 1 1.3714 -5.4844 -0.8889 33 1 1.3696 -5.4843 0.8911 34 1 3.7010 -6.2160 0.9403 35 1 3.8151 -6.0834 -0.8310 36 1 0.9003 -7.1475 0.9145 37 1 1.1085 -8.8914 0.6342 38 1 1.6358 -8.0477 3.1142 39 1 4.3357 -10.5739 3.6489 40 1 5.2129 -10.7832 5.9372 41 1 5.4534 -8.7869 7.3548 42 1 4.8289 -6.5704 6.4902 43 1 5.0753 -7.4851 1.1617 44 1 5.1984 -9.2413 1.4211 45 1 4.4005 -8.5396 -0.9023 46 1 3.3245 -9.6700 -0.0428 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095418694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:20 Heat of formation + Delta-G solvation = -109.939062 kcal Electronic energy + Delta-G solvation = -32660.777499 eV Core-core repulsion = 28033.481407 eV Total energy + Delta-G solvation = -4627.296091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 371.123 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.11842 -47.66599 -47.53747 -40.37504 -39.12966 -34.74595 -32.76257 -32.35993 -32.17790 -31.04810 -29.99120 -26.70632 -26.00460 -25.45148 -24.22857 -23.19071 -22.46429 -21.93881 -20.67370 -18.67482 -18.44704 -18.39549 -17.68077 -17.42277 -16.77373 -15.68771 -15.48856 -15.37322 -15.27282 -14.86341 -14.74356 -14.62184 -14.38900 -14.25775 -14.01796 -13.94272 -13.86169 -13.70564 -13.69048 -13.25630 -13.22751 -12.86713 -12.82890 -12.57475 -12.48129 -11.87836 -11.85830 -11.60616 -11.57015 -11.36722 -11.26313 -11.02880 -10.88071 -10.61491 -10.52427 -10.18096 -9.63476 -9.45013 -9.42081 -9.00495 -8.90208 -8.28370 -8.21785 -6.44761 -6.16850 -3.85756 0.53055 0.78807 1.82045 2.61594 3.08139 3.25026 3.26903 3.34128 3.61588 3.68885 3.92156 3.95899 4.27241 4.29938 4.40382 4.48635 4.54547 4.66369 4.84811 4.90385 4.99673 5.03830 5.04946 5.19154 5.24434 5.35793 5.38396 5.43220 5.46068 5.55717 5.62949 5.70121 5.71893 5.79342 5.83084 5.86842 5.90216 5.93386 6.06141 6.18550 6.27211 6.36538 6.42298 6.56838 6.68956 6.82217 7.06612 7.12299 7.67228 8.43451 9.29698 10.91480 Molecular weight = 371.12amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.002921 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.649288 B = 9583.631195 C =11120.602644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.917 3.083 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.513 4.513 8 H 0.072 0.928 9 S -0.133 6.133 10 C -0.109 4.109 11 C -0.097 4.097 12 C 0.047 3.953 13 N -0.525 5.525 14 C 0.070 3.930 15 C -0.138 4.138 16 C -0.124 4.124 17 C 0.010 3.990 18 C -0.112 4.112 19 C -0.089 4.089 20 C -0.125 4.125 21 C -0.073 4.073 22 C -0.174 4.174 23 C 0.508 3.492 24 F -0.179 7.179 25 F -0.168 7.168 26 F -0.171 7.171 27 C -0.112 4.112 28 C 0.055 3.945 29 H 0.266 0.734 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.139 0.861 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.626 -24.414 10.660 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.743 3.257 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.661 4.661 8 H 0.090 0.910 9 S 0.096 5.904 10 C -0.258 4.258 11 C -0.135 4.135 12 C -0.082 4.082 13 N -0.247 5.247 14 C -0.057 4.057 15 C -0.157 4.157 16 C -0.124 4.124 17 C 0.010 3.990 18 C -0.130 4.130 19 C -0.107 4.107 20 C -0.143 4.143 21 C -0.091 4.091 22 C -0.175 4.175 23 C 0.454 3.546 24 F -0.161 7.161 25 F -0.149 7.149 26 F -0.152 7.152 27 C -0.150 4.150 28 C -0.074 4.074 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.157 0.843 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.102 -24.478 10.146 28.017 hybrid contribution 2.258 1.683 0.986 2.984 sum 11.359 -22.795 11.132 27.795 Atomic orbital electron populations 1.70039 1.05882 1.27087 1.47583 1.25010 0.95073 0.99030 0.94738 0.86135 0.79711 0.81983 0.77836 1.19610 1.20583 1.20615 1.22734 0.94533 0.90824 1.58020 0.90996 1.84577 1.09674 0.99387 1.96811 1.23192 1.02720 0.97316 1.02616 1.21355 0.97066 0.92309 1.02795 1.22368 0.97805 0.86864 1.01169 1.62748 1.12419 1.03063 1.46425 1.21323 0.95375 1.03095 0.85935 1.23445 0.95337 0.96212 1.00731 1.19627 0.94862 1.06081 0.91825 1.18760 0.95200 0.92028 0.93006 1.21256 0.99407 0.96332 0.96041 1.21329 0.96565 0.99067 0.93731 1.21200 1.00811 0.91848 1.00481 1.21020 0.95375 0.99076 0.93596 1.20221 1.08288 0.91855 0.97124 1.18209 0.75468 0.85290 0.75672 1.93162 1.94408 1.66504 1.62002 1.93256 1.32745 1.96706 1.92209 1.93203 1.75392 1.94170 1.52478 1.20999 0.97487 1.02978 0.93538 1.22239 0.92944 0.96451 0.95756 0.92448 0.92519 0.92198 0.90798 0.91639 0.93413 0.90893 0.88017 0.89274 0.86891 0.84850 0.85037 0.84883 0.84335 0.90081 0.90675 0.90082 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.62 13.22 55.49 0.73 -25.89 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -15.21 9.50 30.94 0.29 -14.92 16 8 H 0.07 2.09 7.80 -52.49 -0.41 1.68 16 9 S -0.13 -3.61 21.44 -107.50 -2.30 -5.91 16 10 C -0.11 -2.35 5.67 37.16 0.21 -2.14 16 11 C -0.10 -1.69 4.60 -26.73 -0.12 -1.81 16 12 C 0.05 0.68 4.50 -3.82 -0.02 0.66 16 13 N -0.52 -6.46 5.12 -236.13 -1.21 -7.67 16 14 C 0.07 0.81 5.68 -5.27 -0.03 0.78 16 15 C -0.14 -1.56 7.17 -36.40 -0.26 -1.82 16 16 C -0.12 -1.33 3.23 -102.72 -0.33 -1.66 16 17 C 0.01 0.11 5.09 -105.02 -0.53 -0.43 16 18 C -0.11 -0.89 9.79 -39.19 -0.38 -1.27 16 19 C -0.09 -0.58 10.03 -39.64 -0.40 -0.98 16 20 C -0.13 -0.88 10.04 -39.50 -0.40 -1.27 16 21 C -0.07 -0.67 9.42 -39.64 -0.37 -1.04 16 22 C -0.17 -1.96 5.40 -104.24 -0.56 -2.53 16 23 C 0.51 7.07 2.89 36.01 0.10 7.18 16 24 F -0.18 -2.55 15.98 2.25 0.04 -2.51 16 25 F -0.17 -2.57 14.32 2.25 0.03 -2.54 16 26 F -0.17 -2.59 14.48 2.25 0.03 -2.56 16 27 C -0.11 -1.11 5.24 -28.02 -0.15 -1.25 16 28 C 0.05 0.54 6.05 -3.61 -0.02 0.51 16 29 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 31 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.07 1.16 6.41 -51.93 -0.33 0.83 16 34 H 0.05 0.72 3.78 -51.93 -0.20 0.52 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.10 1.30 5.65 -51.93 -0.29 1.01 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.11 1.30 7.36 -52.49 -0.39 0.91 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.14 1.14 7.15 -52.49 -0.38 0.76 16 43 H 0.08 0.93 6.50 -51.93 -0.34 0.60 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -33.00 387.42 -11.05 -44.05 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.11 Total: 0.05 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -3.07 Total: -20.02 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: -0.48 Total: -33.56 kcal Atomic # 9 Polarization: -7.71 SS G_CDS: 0.10 Total: -7.61 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -2.30 Total: -5.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.00 -11.05 -44.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095418694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.890 kcal (2) G-P(sol) polarization free energy of solvation -33.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds