Wall clock time and date at job start Tue Mar 31 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99836 * 2 1 4 4 H 1.48503 * 109.46982 * 270.00028 * 3 2 1 5 5 H 1.48500 * 109.47327 * 29.99839 * 3 2 1 6 6 H 1.48503 * 109.47164 * 149.99960 * 3 2 1 7 7 C 1.37873 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99903 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00377 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47110 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00671 * 275.45995 * 10 9 7 12 12 C 1.50697 * 109.47158 * 275.00470 * 11 10 9 13 13 C 1.34514 * 125.79167 * 89.70620 * 12 11 10 14 14 C 1.41380 * 106.84047 * 179.89090 * 13 12 11 15 15 C 1.34509 * 106.84059 * 0.37314 * 14 13 12 16 16 O 1.34299 * 108.42277 * 359.77204 * 15 14 13 17 17 S 1.65605 * 119.99783 * 95.45997 * 10 9 7 18 18 O 1.42107 * 106.40117 * 197.73486 * 17 10 9 19 19 O 1.42099 * 106.40454 * 330.65903 * 17 10 9 20 20 C 1.76202 * 107.21804 * 84.19839 * 17 10 9 21 21 C 1.38346 * 120.44445 * 345.55405 * 20 17 10 22 22 C 1.38925 * 118.49584 * 179.75699 * 21 20 17 23 23 Cl 1.73602 * 120.34836 * 180.24041 * 22 21 20 24 24 C 1.38165 * 119.30361 * 0.49336 * 22 21 20 25 25 N 1.31953 * 120.83448 * 359.76868 * 24 22 21 26 26 C 1.32412 * 121.63720 * 359.97438 * 25 24 22 27 27 N 1.39071 * 119.68843 * 179.97438 * 26 25 24 28 28 H 0.96996 * 120.00415 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47173 * 60.00485 * 9 7 2 30 30 H 1.08998 * 109.47194 * 300.00302 * 9 7 2 31 31 H 1.09005 * 109.46263 * 34.99852 * 11 10 9 32 32 H 1.08996 * 109.47384 * 154.99556 * 11 10 9 33 33 H 1.08003 * 126.57585 * 0.03417 * 13 12 11 34 34 H 1.08004 * 126.57995 * 180.17084 * 14 13 12 35 35 H 1.07997 * 125.78946 * 179.74863 * 15 14 13 36 36 H 1.08006 * 120.74820 * 0.02562 * 21 20 17 37 37 H 1.07995 * 119.58183 * 179.74774 * 24 22 21 38 38 H 0.97007 * 119.99535 * 175.43469 * 27 26 25 39 39 H 0.97000 * 120.00441 * 355.44044 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 2.7699 -4.0905 -1.2653 12 6 1.8280 -5.0844 -1.8945 13 6 0.8320 -4.7918 -2.7499 14 6 0.2100 -6.0155 -3.0883 15 6 0.8578 -6.9818 -2.4131 16 8 1.8368 -6.4120 -1.6916 17 16 2.6385 -4.3312 1.4253 18 8 3.8354 -5.0510 1.1632 19 8 2.5382 -3.3281 2.4267 20 6 1.4068 -5.5340 1.8007 21 6 0.1942 -5.5270 1.1347 22 6 -0.7458 -6.4972 1.4592 23 17 -2.2808 -6.5370 0.6492 24 6 -0.4483 -7.4268 2.4371 25 7 0.7152 -7.4051 3.0593 26 6 1.6384 -6.4997 2.7744 27 7 2.8507 -6.5141 3.4557 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5568 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.9129 -3.2473 -1.9412 32 1 3.7300 -4.5700 -1.0746 33 1 0.5611 -3.8106 -3.1109 34 1 -0.6270 -6.1486 -3.7578 35 1 0.6292 -8.0368 -2.4453 36 1 -0.0152 -4.7868 0.3766 37 1 -1.1773 -8.1804 2.6958 38 1 3.5550 -5.8957 3.2056 39 1 2.9920 -7.1425 4.1810 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095433729.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:29 Heat of formation + Delta-G solvation = -13.536150 kcal Electronic energy + Delta-G solvation = -30537.570591 eV Core-core repulsion = 26214.505296 eV Total energy + Delta-G solvation = -4323.065295 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 371.054 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.29958 -40.36760 -36.87748 -36.68432 -36.21757 -35.58996 -34.68786 -32.82572 -32.72362 -32.56008 -30.15035 -29.32642 -27.31356 -25.11794 -24.42015 -23.12708 -22.55610 -21.44391 -20.35511 -18.89963 -18.11819 -17.99705 -17.49649 -17.20443 -16.46130 -16.32023 -16.01140 -15.54806 -15.40020 -15.23593 -14.81508 -14.44714 -14.39411 -13.78754 -13.64327 -13.18781 -12.94978 -12.62481 -12.56724 -12.45004 -12.33828 -12.04540 -11.84079 -11.67692 -11.33786 -11.30252 -11.22542 -11.19841 -10.78352 -10.68067 -10.66514 -10.20628 -10.12993 -9.98403 -9.69685 -9.65757 -8.53799 -8.45525 -8.26986 -8.18999 -6.14780 -4.19699 0.62951 0.76563 1.12476 1.92121 2.07014 2.82592 3.13598 3.19839 3.27511 3.34271 3.35134 3.40567 3.45252 3.94592 4.37615 4.38811 4.62590 4.84635 4.91245 5.03101 5.06394 5.19009 5.22279 5.28221 5.41500 5.47889 5.72576 5.90670 6.03096 6.05707 6.08004 6.23776 6.34273 6.73599 6.77846 6.98933 7.05808 7.14992 7.33862 7.40143 7.78644 7.81543 8.06061 8.82179 9.46293 10.93875 Molecular weight = 371.05amu Principal moments of inertia in cm(-1) A = 0.009009 B = 0.004659 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.205134 B = 6008.386971 C = 6709.121754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.532 4.532 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.974 5.974 11 C 0.200 3.800 12 C -0.037 4.037 13 C -0.187 4.187 14 C -0.212 4.212 15 C -0.047 4.047 16 O -0.174 6.174 17 S 2.687 3.313 18 O -0.971 6.971 19 O -0.930 6.930 20 C -0.772 4.772 21 C 0.079 3.921 22 C -0.165 4.165 23 Cl -0.055 7.055 24 C 0.208 3.792 25 N -0.537 5.537 26 C 0.492 3.508 27 N -0.840 5.840 28 H 0.265 0.735 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.195 0.805 36 H 0.157 0.843 37 H 0.171 0.829 38 H 0.411 0.589 39 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.515 -15.487 -1.160 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.571 4.571 8 H 0.083 0.917 9 C 0.128 3.872 10 N -0.813 5.813 11 C 0.073 3.927 12 C -0.089 4.089 13 C -0.207 4.207 14 C -0.231 4.231 15 C -0.115 4.115 16 O -0.070 6.070 17 S 2.773 3.227 18 O -0.961 6.961 19 O -0.920 6.920 20 C -0.863 4.863 21 C 0.052 3.948 22 C -0.197 4.197 23 Cl -0.026 7.026 24 C 0.047 3.953 25 N -0.256 5.256 26 C 0.251 3.749 27 N -0.384 5.384 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.143 0.857 32 H 0.118 0.882 33 H 0.170 0.830 34 H 0.162 0.838 35 H 0.212 0.788 36 H 0.175 0.825 37 H 0.188 0.812 38 H 0.244 0.756 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 0.314 -15.923 0.141 15.927 hybrid contribution -0.721 1.083 -0.832 1.544 sum -0.407 -14.840 -0.691 14.861 Atomic orbital electron populations 1.69910 1.05990 1.27332 1.49838 1.24915 0.94891 0.99297 0.94694 0.86501 0.80040 0.82869 0.78106 1.20542 1.21071 1.19604 1.21395 0.93724 0.90163 1.51798 0.91743 1.19294 0.86989 0.81975 0.98917 1.57535 1.60198 1.44735 1.18816 1.19733 0.92816 0.93732 0.86408 1.23356 1.02082 0.81536 1.01959 1.21735 0.97488 0.99726 1.01740 1.21799 1.03622 0.92643 1.05044 1.23925 0.91428 0.99055 0.97094 1.84065 1.46438 1.20456 1.56036 1.02392 0.73411 0.73063 0.73834 1.93523 1.42936 1.74552 1.85071 1.93671 1.85920 1.55388 1.56971 1.31495 1.18377 1.22890 1.13517 1.21083 0.88330 0.93063 0.92317 1.21603 0.91237 1.03263 1.03627 1.98362 1.27478 1.98266 1.78526 1.22612 0.91798 0.93692 0.87173 1.67389 1.02656 1.25104 1.30438 1.17509 0.86118 0.86297 0.84942 1.42615 1.13025 1.43663 1.39057 0.92527 0.93732 0.94277 0.85689 0.88167 0.83003 0.83825 0.78839 0.82536 0.81229 0.75619 0.75503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.69 13.29 55.43 0.74 -23.95 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -13.78 9.38 -34.44 -0.32 -14.11 16 8 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 9 C 0.25 5.72 4.15 -5.20 -0.02 5.69 16 10 N -0.97 -18.80 2.03 -116.95 -0.24 -19.03 16 11 C 0.20 3.26 6.18 -5.19 -0.03 3.23 16 12 C -0.04 -0.58 6.90 -35.63 -0.25 -0.83 16 13 C -0.19 -2.75 10.81 -39.70 -0.43 -3.18 16 14 C -0.21 -2.71 10.91 -39.71 -0.43 -3.15 16 15 C -0.05 -0.59 12.09 29.41 0.36 -0.23 16 16 O -0.17 -2.65 10.65 5.72 0.06 -2.59 16 17 S 2.69 51.87 4.64 -107.50 -0.50 51.37 16 18 O -0.97 -18.28 14.99 -57.17 -0.86 -19.14 16 19 O -0.93 -21.24 17.20 -57.17 -0.98 -22.22 16 20 C -0.77 -13.44 5.87 -39.23 -0.23 -13.67 16 21 C 0.08 1.30 9.48 -39.29 -0.37 0.93 16 22 C -0.16 -2.36 6.34 -39.35 -0.25 -2.61 16 23 Cl -0.05 -0.70 28.98 -51.86 -1.50 -2.20 16 24 C 0.21 2.70 10.97 -17.53 -0.19 2.51 16 25 N -0.54 -7.84 10.39 -12.40 -0.13 -7.97 16 26 C 0.49 7.85 7.72 -154.96 -1.20 6.65 16 27 N -0.84 -11.33 8.96 31.13 0.28 -11.05 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.04 1.02 8.11 -51.93 -0.42 0.60 16 30 H 0.04 0.97 7.74 -51.93 -0.40 0.57 16 31 H 0.13 1.91 8.11 -51.93 -0.42 1.49 16 32 H 0.10 1.53 6.87 -51.93 -0.36 1.17 16 33 H 0.15 2.21 8.06 -52.48 -0.42 1.78 16 34 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.19 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.16 2.68 6.56 -52.48 -0.34 2.34 16 37 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.41 5.71 6.31 -40.82 -0.26 5.45 16 39 H 0.41 4.21 8.95 -40.82 -0.37 3.85 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -32.01 369.26 -9.86 -41.87 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -3.80 Total: 10.72 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -3.47 Total: -17.13 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: 0.65 Total: -62.01 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -1.78 Total: -43.95 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 51.87 SS G_CDS: -0.50 Total: 51.37 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.01 -9.86 -41.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095433729.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.335 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds