Wall clock time and date at job start Tue Mar 31 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99840 * 2 1 4 4 H 1.48498 * 109.47093 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47407 * 300.00224 * 3 2 1 6 6 H 1.48500 * 109.47131 * 60.00526 * 3 2 1 7 7 C 1.37874 * 120.00441 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00526 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99462 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46827 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00097 * 274.99880 * 10 9 7 12 12 C 1.53002 * 109.47251 * 275.00387 * 11 10 9 13 13 C 1.53001 * 109.47462 * 179.97438 * 12 11 10 14 14 F 1.39898 * 109.47037 * 59.99345 * 13 12 11 15 15 F 1.39896 * 109.47378 * 179.97438 * 13 12 11 16 16 F 1.39904 * 109.46622 * 300.00193 * 13 12 11 17 17 S 1.65599 * 120.00114 * 95.00293 * 10 9 7 18 18 O 1.42107 * 106.40063 * 336.45582 * 17 10 9 19 19 O 1.42103 * 106.40106 * 203.54078 * 17 10 9 20 20 C 1.76198 * 107.21938 * 89.99566 * 17 10 9 21 21 C 1.38224 * 120.41398 * 270.04055 * 20 17 10 22 22 N 1.31854 * 120.79348 * 179.97438 * 21 20 17 23 23 C 1.31874 * 121.73784 * 0.02562 * 22 21 20 24 24 C 1.38307 * 120.74609 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 120.43076 * 180.02562 * 24 23 22 26 26 C 1.38603 * 120.40966 * 90.00586 * 20 17 10 27 27 H 0.97008 * 120.00006 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47197 * 60.00485 * 9 7 2 29 29 H 1.09001 * 109.47305 * 299.99970 * 9 7 2 30 30 H 1.09001 * 109.47006 * 34.99912 * 11 10 9 31 31 H 1.08995 * 109.47562 * 155.00374 * 11 10 9 32 32 H 1.09001 * 109.46727 * 299.99695 * 12 11 10 33 33 H 1.08997 * 109.47463 * 59.99984 * 12 11 10 34 34 H 1.08001 * 119.60477 * 359.97438 * 21 20 17 35 35 H 1.08005 * 119.62345 * 179.97438 * 23 22 21 36 36 H 1.08005 * 120.79853 * 0.03406 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7631 -4.0975 -1.2644 12 6 1.8034 -5.1103 -1.8923 13 6 2.3880 -5.6163 -3.2126 14 9 3.6217 -6.2302 -2.9715 15 9 1.5107 -6.5427 -3.7864 16 9 2.5664 -4.5387 -4.0869 17 16 2.6461 -4.3232 1.4281 18 8 2.4210 -3.3557 2.4443 19 8 3.9105 -4.9301 1.1992 20 6 1.5113 -5.6365 1.7314 21 6 0.3499 -5.4070 2.4449 22 7 -0.5048 -6.3841 2.6758 23 6 -0.2904 -7.6105 2.2407 24 6 0.8497 -7.9158 1.5198 25 17 1.1233 -9.5328 0.9505 26 6 1.7717 -6.9125 1.2568 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.9024 -3.2582 -1.9458 31 1 3.7241 -4.5761 -1.0762 32 1 1.6641 -5.9495 -1.2109 33 1 0.8424 -4.6318 -2.0807 34 1 0.1399 -4.4154 2.8178 35 1 -1.0134 -8.3851 2.4499 36 1 2.6711 -7.1211 0.6964 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095437330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:21 Heat of formation + Delta-G solvation = -197.833085 kcal Electronic energy + Delta-G solvation = -30455.388930 eV Core-core repulsion = 25484.756519 eV Total energy + Delta-G solvation = -4970.632412 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 372.031 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.07201 -47.58610 -47.52397 -40.47362 -37.09572 -36.97056 -36.61078 -35.52659 -33.12098 -32.92680 -31.51995 -31.47769 -27.39734 -25.10873 -24.44408 -24.04060 -22.90358 -21.90217 -19.09777 -18.55969 -18.50661 -17.98421 -17.44834 -17.17355 -17.06520 -16.74476 -16.39096 -15.52655 -15.30864 -14.73597 -14.66201 -14.54434 -14.46028 -14.00686 -13.87878 -13.73486 -13.67771 -13.64546 -13.46716 -13.27938 -12.98956 -12.42750 -12.39853 -12.15627 -11.93083 -11.76422 -11.72064 -11.67689 -11.39723 -11.24609 -11.14575 -10.82987 -10.71411 -10.46507 -10.15375 -10.01064 -9.83050 -9.44565 -8.57187 -8.45040 -6.18932 -4.23806 0.17887 0.60863 0.66717 1.61007 2.72444 3.04261 3.25699 3.34050 3.34943 3.39656 3.85867 3.96552 4.03787 4.05334 4.07533 4.24270 4.35160 4.39114 4.55671 4.69992 4.89650 4.97129 5.07301 5.17015 5.31945 5.39567 5.45075 5.48873 5.96250 6.01227 6.16204 6.91541 7.10708 7.27428 7.36119 7.77946 8.01610 8.78818 9.42976 10.89710 Molecular weight = 372.03amu Principal moments of inertia in cm(-1) A = 0.008702 B = 0.004405 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.833162 B = 6355.515120 C = 8368.012406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.973 5.973 11 C 0.119 3.881 12 C -0.195 4.195 13 C 0.457 3.543 14 F -0.183 7.183 15 F -0.187 7.187 16 F -0.178 7.178 17 S 2.686 3.314 18 O -0.925 6.925 19 O -0.963 6.963 20 C -0.722 4.722 21 C 0.209 3.791 22 N -0.478 5.478 23 C 0.161 3.839 24 C -0.116 4.116 25 Cl -0.047 7.047 26 C 0.027 3.973 27 H 0.265 0.735 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.185 0.815 35 H 0.172 0.828 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 -16.299 -1.488 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.137 4.137 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.811 5.811 11 C -0.009 4.009 12 C -0.236 4.236 13 C 0.403 3.597 14 F -0.165 7.165 15 F -0.169 7.169 16 F -0.160 7.160 17 S 2.770 3.230 18 O -0.915 6.915 19 O -0.953 6.953 20 C -0.806 4.806 21 C 0.051 3.949 22 N -0.186 5.186 23 C 0.003 3.997 24 C -0.145 4.145 25 Cl -0.019 7.019 26 C 0.000 4.000 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.140 0.860 34 H 0.202 0.798 35 H 0.189 0.811 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.314 -15.936 -0.534 15.948 hybrid contribution 0.488 -0.065 -0.925 1.048 sum 0.802 -16.001 -1.459 16.088 Atomic orbital electron populations 1.69910 1.06013 1.27295 1.49920 1.24906 0.94885 0.99339 0.94599 0.86447 0.80232 0.83150 0.77684 1.19520 1.20924 1.20737 1.21444 0.93786 0.90218 1.51786 0.91728 1.19272 0.86894 0.81888 0.98922 1.57497 1.60152 1.44692 1.18798 1.21217 0.94708 0.97484 0.87479 1.23520 1.04351 1.02953 0.92742 1.20443 0.76179 0.75464 0.87658 1.93191 1.45056 1.83790 1.94418 1.93179 1.69215 1.67637 1.86837 1.93212 1.95354 1.55209 1.72194 1.02562 0.73590 0.72886 0.73945 1.93647 1.85293 1.56814 1.55733 1.93539 1.37503 1.78544 1.85667 1.32752 1.18171 1.16453 1.13217 1.22888 0.85855 0.99127 0.86991 1.68047 1.30641 0.99890 1.20069 1.23174 0.93160 0.94460 0.88865 1.22107 0.99245 0.88403 1.04764 1.98396 1.96225 1.19542 1.87706 1.21291 0.97122 0.89769 0.91805 0.92544 0.94092 0.93878 0.87321 0.88574 0.88454 0.86031 0.79793 0.81123 0.82202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.21 13.29 55.43 0.74 -23.47 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -13.49 9.38 -34.44 -0.32 -13.81 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.25 5.44 5.10 -5.19 -0.03 5.41 16 10 N -0.97 -17.03 2.77 -115.66 -0.32 -17.35 16 11 C 0.12 1.74 5.43 -4.04 -0.02 1.71 16 12 C -0.20 -2.36 5.58 -26.73 -0.15 -2.51 16 13 C 0.46 5.59 3.16 37.16 0.12 5.71 16 14 F -0.18 -2.28 16.80 2.25 0.04 -2.25 16 15 F -0.19 -2.30 17.32 2.25 0.04 -2.26 16 16 F -0.18 -2.37 16.80 2.25 0.04 -2.34 16 17 S 2.69 45.92 5.66 -107.50 -0.61 45.31 16 18 O -0.92 -19.02 16.28 -57.17 -0.93 -19.95 16 19 O -0.96 -16.99 15.91 -57.17 -0.91 -17.90 16 20 C -0.72 -10.11 5.99 -39.45 -0.24 -10.35 16 21 C 0.21 2.93 10.69 -17.55 -0.19 2.74 16 22 N -0.48 -6.28 10.36 -13.22 -0.14 -6.41 16 23 C 0.16 1.74 10.99 -17.51 -0.19 1.55 16 24 C -0.12 -1.26 6.34 -39.36 -0.25 -1.51 16 25 Cl -0.05 -0.45 28.99 -51.86 -1.50 -1.95 16 26 C 0.03 0.33 8.38 -39.25 -0.33 0.00 16 27 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 29 H 0.04 0.98 7.61 -51.93 -0.40 0.58 16 30 H 0.11 1.64 7.77 -51.93 -0.40 1.24 16 31 H 0.10 1.32 6.58 -51.93 -0.34 0.98 16 32 H 0.10 1.03 7.03 -51.93 -0.36 0.66 16 33 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.19 2.53 7.63 -52.49 -0.40 2.13 16 35 H 0.17 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.16 1.72 7.71 -52.48 -0.40 1.31 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -29.89 356.27 -8.03 -37.91 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -3.12 Total: -0.83 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -1.70 Total: -9.43 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.28 Total: -47.24 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -1.84 Total: -37.85 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 0.11 Total: -6.84 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 45.92 SS G_CDS: -0.61 Total: 45.31 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.50 Total: -1.95 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.89 -8.03 -37.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095437330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.921 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds