Wall clock time and date at job start Tue Mar 31 2020 05:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86795 * 120.00326 * 2 1 4 4 H 1.48500 * 109.47422 * 239.99965 * 3 2 1 5 5 H 1.48500 * 109.47226 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46913 * 120.00383 * 3 2 1 7 7 C 1.38812 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00334 * 175.92433 * 7 2 1 9 9 N 1.36942 * 119.99924 * 355.92043 * 7 2 1 10 10 C 1.46974 * 120.59082 * 215.62380 * 9 7 2 11 11 C 1.53370 * 108.62932 * 235.24721 * 10 9 7 12 12 N 1.46967 * 108.63668 * 310.57395 * 11 10 9 13 13 C 1.34773 * 120.59409 * 235.20839 * 12 11 10 14 14 O 1.21561 * 120.00152 * 5.93271 * 13 12 11 15 15 C 1.47784 * 119.99942 * 185.93372 * 13 12 11 16 16 C 1.39420 * 120.09755 * 53.94031 * 15 13 12 17 17 C 1.39046 * 119.74625 * 180.22801 * 16 15 13 18 18 C 1.48348 * 120.03842 * 179.76676 * 17 16 15 19 19 C 1.39342 * 119.72928 * 184.72299 * 18 17 16 20 20 C 1.38393 * 119.06707 * 180.02562 * 19 18 17 21 21 C 1.38793 * 118.51160 * 0.02562 * 20 19 18 22 22 C 1.38238 * 119.37034 * 0.26865 * 21 20 19 23 23 N 1.31778 * 120.89012 * 359.42732 * 22 21 20 24 24 C 1.39530 * 119.93153 * 359.49466 * 17 16 15 25 25 C 1.38032 * 120.18724 * 0.27212 * 24 17 16 26 26 C 1.38243 * 120.26616 * 359.97438 * 25 24 17 27 27 Cl 1.73607 * 119.96724 * 180.02562 * 26 25 24 28 28 C 1.46963 * 118.81104 * 55.48135 * 12 11 10 29 29 C 1.46958 * 120.59474 * 35.64313 * 9 7 2 30 30 H 0.97006 * 119.99733 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.60600 * 115.50199 * 10 9 7 32 32 H 1.08992 * 109.75164 * 355.07453 * 10 9 7 33 33 H 1.09002 * 109.60566 * 190.83249 * 11 10 9 34 34 H 1.08991 * 109.61189 * 70.32111 * 11 10 9 35 35 H 1.08009 * 120.12528 * 0.02562 * 16 15 13 36 36 H 1.08000 * 120.46451 * 0.02562 * 19 18 17 37 37 H 1.08002 * 120.74339 * 180.02562 * 20 19 18 38 38 H 1.08003 * 120.31672 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.55581 * 179.72710 * 22 21 20 40 40 H 1.08001 * 119.90520 * 180.25834 * 24 17 16 41 41 H 1.08006 * 119.86252 * 180.02562 * 25 24 17 42 42 H 1.09006 * 109.60920 * 64.26324 * 28 12 11 43 43 H 1.08999 * 109.61087 * 184.77979 * 28 12 11 44 44 H 1.09005 * 109.61163 * 244.49695 * 29 9 7 45 45 H 1.09002 * 109.61037 * 5.00952 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0880 -1.2035 -0.0670 9 7 1.3279 -2.3866 0.0833 10 6 1.8902 -3.5226 0.8274 11 6 1.9526 -4.7374 -0.1067 12 7 0.6454 -4.8956 -0.7595 13 6 -0.0256 -6.0616 -0.6776 14 8 0.3962 -6.9573 0.0276 15 6 -1.2741 -6.2511 -1.4453 16 6 -1.2881 -6.0330 -2.8223 17 6 -2.4680 -6.2089 -3.5367 18 6 -2.4914 -5.9736 -5.0012 19 6 -3.6971 -6.0553 -5.6949 20 6 -3.7032 -5.8338 -7.0610 21 6 -2.5016 -5.5380 -7.6895 22 6 -1.3412 -5.4789 -6.9405 23 7 -1.3642 -5.6883 -5.6397 24 6 -3.6285 -6.6125 -2.8756 25 6 -3.6104 -6.8323 -1.5130 26 6 -2.4430 -6.6549 -0.7941 27 17 -2.4287 -6.9343 0.9193 28 6 0.0857 -3.7615 -1.5081 29 6 0.0208 -2.5447 -0.5694 30 1 -0.4850 0.8401 0.0004 31 1 1.2539 -3.7507 1.6824 32 1 2.8937 -3.2756 1.1738 33 1 2.1833 -5.6321 0.4717 34 1 2.7219 -4.5788 -0.8623 35 1 -0.3867 -5.7254 -3.3316 36 1 -4.6140 -6.2883 -5.1739 37 1 -4.6223 -5.8899 -7.6254 38 1 -2.4728 -5.3595 -8.7543 39 1 -0.4039 -5.2533 -7.4272 40 1 -4.5437 -6.7530 -3.4316 41 1 -4.5117 -7.1450 -1.0066 42 1 0.7253 -3.5350 -2.3612 43 1 -0.9168 -4.0114 -1.8554 44 1 -0.7487 -2.7034 0.1862 45 1 -0.2099 -1.6501 -1.1478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095438342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:54 Heat of formation + Delta-G solvation = 60.615342 kcal Electronic energy + Delta-G solvation = -30919.135656 eV Core-core repulsion = 26735.508049 eV Total energy + Delta-G solvation = -4183.627607 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.114 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.74962 -39.93351 -38.39316 -36.69669 -36.40892 -33.86529 -33.08974 -32.76382 -31.88671 -30.84574 -29.98198 -29.45061 -26.98039 -24.76524 -24.36400 -23.72379 -22.94086 -22.55543 -21.73400 -20.45432 -19.00508 -17.81978 -17.06449 -16.75418 -16.62157 -16.20015 -15.83712 -15.46632 -15.29585 -14.81365 -14.42502 -14.40992 -14.25663 -13.96252 -13.62107 -13.50258 -13.36090 -13.30377 -13.27551 -13.10627 -12.39991 -12.20228 -12.18495 -11.73868 -11.60284 -11.54591 -11.11857 -10.91474 -10.87430 -10.67028 -10.49416 -10.23025 -10.16216 -10.08303 -9.88604 -9.77367 -9.75734 -9.50485 -9.07201 -8.52686 -8.39711 -8.20661 -6.58336 -5.83813 -3.39013 0.19758 0.90790 0.97106 1.39519 2.09273 2.88661 3.24108 3.35295 3.40646 3.41358 3.49198 3.78851 3.83409 4.29164 4.43731 4.55377 4.57498 4.64394 4.68682 4.79080 4.94045 5.13629 5.17220 5.24785 5.34210 5.37318 5.43624 5.59607 5.74577 5.78811 5.85536 5.90715 5.92682 5.93469 6.02742 6.16113 6.20854 6.24556 6.38975 6.41349 6.46742 6.50153 6.83772 6.97707 7.30435 7.63379 7.69741 7.72731 7.90673 8.45206 8.51535 9.16929 9.74845 10.35373 11.21234 Molecular weight = 371.11amu Principal moments of inertia in cm(-1) A = 0.007762 B = 0.003311 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3606.669920 B = 8455.865814 C =10728.125972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.011 3.989 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.132 3.868 11 C 0.096 3.904 12 N -0.585 5.585 13 C 0.553 3.447 14 O -0.538 6.538 15 C -0.110 4.110 16 C -0.033 4.033 17 C -0.056 4.056 18 C 0.173 3.827 19 C -0.163 4.163 20 C -0.072 4.072 21 C -0.177 4.177 22 C 0.109 3.891 23 N -0.475 5.475 24 C -0.075 4.075 25 C -0.118 4.118 26 C 0.015 3.985 27 Cl -0.044 7.044 28 C 0.076 3.924 29 C 0.156 3.844 30 H 0.257 0.743 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.159 0.841 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.020 0.980 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.428 -13.567 -13.395 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.188 4.188 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.005 3.995 11 C -0.028 4.028 12 N -0.317 5.317 13 C 0.340 3.660 14 O -0.416 6.416 15 C -0.114 4.114 16 C -0.053 4.053 17 C -0.057 4.057 18 C 0.037 3.963 19 C -0.183 4.183 20 C -0.098 4.098 21 C -0.197 4.197 22 C -0.049 4.049 23 N -0.184 5.184 24 C -0.094 4.094 25 C -0.137 4.137 26 C -0.013 4.013 27 Cl -0.014 7.014 28 C -0.048 4.048 29 C 0.029 3.971 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.177 0.823 40 H 0.156 0.844 41 H 0.161 0.839 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.038 0.962 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.500 -13.807 -12.388 20.841 hybrid contribution -0.477 0.940 -0.477 1.157 sum -9.977 -12.867 -12.866 20.751 Atomic orbital electron populations 1.69822 1.05413 1.25733 1.53886 1.25331 0.95548 0.98358 0.99540 0.86336 0.78932 0.83083 0.78186 1.20857 1.21549 1.20798 1.19133 0.90791 0.83002 1.45696 0.91702 1.43916 1.20012 1.09980 1.57619 1.21307 0.98226 0.87426 0.92523 1.22253 0.83018 1.00490 0.97021 1.47997 1.20449 1.11750 1.51458 1.18043 0.83433 0.82874 0.81675 1.90757 1.68509 1.42146 1.40191 1.19871 0.94023 1.03241 0.94305 1.21417 0.98665 0.93924 0.91270 1.18411 0.94015 1.02699 0.90589 1.19651 0.89041 0.95028 0.92550 1.22075 0.98942 1.02172 0.95100 1.21537 0.98600 0.95354 0.94304 1.22216 0.93761 1.02010 1.01688 1.22781 0.98538 0.94500 0.89085 1.67643 1.29032 1.11197 1.10504 1.21221 0.97562 0.97007 0.93626 1.20882 0.97002 1.02079 0.93725 1.21073 0.94120 0.99706 0.86422 1.98413 1.98694 1.94074 1.10269 1.22968 0.97497 0.88147 0.96188 1.21468 0.87051 0.94771 0.93791 0.93306 0.95761 0.91499 0.89878 0.91773 0.83291 0.84402 0.84592 0.84645 0.82341 0.84376 0.83929 0.91722 0.91214 0.96160 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.40 10.60 55.49 0.59 -24.81 16 2 C 0.01 0.30 5.32 -17.43 -0.09 0.20 16 3 Si 0.91 21.18 29.56 -169.99 -5.02 16.15 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.26 -6.87 9.55 -15.06 -0.14 -7.01 16 8 H 0.07 1.70 7.83 -52.49 -0.41 1.28 16 9 N -0.59 -14.72 2.97 -171.76 -0.51 -15.23 16 10 C 0.13 2.84 6.67 -3.59 -0.02 2.82 16 11 C 0.10 1.83 6.60 -3.60 -0.02 1.81 16 12 N -0.59 -11.27 2.94 -173.35 -0.51 -11.78 16 13 C 0.55 10.49 6.59 -12.36 -0.08 10.41 16 14 O -0.54 -11.34 15.53 5.31 0.08 -11.26 16 15 C -0.11 -1.79 4.62 -104.98 -0.49 -2.27 16 16 C -0.03 -0.48 7.26 -38.84 -0.28 -0.76 16 17 C -0.06 -0.68 5.87 -104.95 -0.62 -1.30 16 18 C 0.17 1.97 6.72 -82.94 -0.56 1.42 16 19 C -0.16 -1.38 9.45 -39.11 -0.37 -1.75 16 20 C -0.07 -0.51 10.17 -39.32 -0.40 -0.91 16 21 C -0.18 -1.29 10.11 -39.38 -0.40 -1.69 16 22 C 0.11 1.02 11.17 -17.57 -0.20 0.82 16 23 N -0.48 -5.82 9.43 -9.78 -0.09 -5.92 16 24 C -0.07 -0.74 9.41 -39.18 -0.37 -1.11 16 25 C -0.12 -1.30 9.80 -39.66 -0.39 -1.69 16 26 C 0.01 0.22 6.35 -39.01 -0.25 -0.03 16 27 Cl -0.04 -0.68 27.33 -51.86 -1.42 -2.10 16 28 C 0.08 1.47 5.79 -3.37 -0.02 1.45 16 29 C 0.16 3.68 5.49 -3.37 -0.02 3.66 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.36 7.94 -51.93 -0.41 0.94 16 33 H 0.08 1.54 6.99 -51.93 -0.36 1.18 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.15 2.23 7.23 -52.48 -0.38 1.85 16 36 H 0.14 0.80 6.21 -52.49 -0.33 0.48 16 37 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.14 0.62 8.06 -52.48 -0.42 0.19 16 39 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.14 0.87 6.19 -52.49 -0.33 0.54 16 41 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.07 1.24 5.30 -51.93 -0.28 0.96 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.11 2.95 5.84 -51.93 -0.30 2.65 16 LS Contribution 383.26 15.07 5.78 5.78 Total: -1.00 -32.55 383.26 -11.13 -43.68 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.31 Total: 1.41 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -4.71 Total: 4.07 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.52 Total: -57.73 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.42 Total: -2.10 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.55 -11.13 -43.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095438342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.297 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds