Wall clock time and date at job start Tue Mar 31 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30441 * 125.97868 * 2 1 4 4 N 1.39926 * 108.96246 * 180.24205 * 3 2 1 5 5 C 1.46501 * 125.74305 * 179.73463 * 4 3 2 6 6 C 1.34405 * 108.51263 * 359.72892 * 4 3 2 7 7 C 1.50698 * 126.31925 * 180.02562 * 6 4 3 8 8 C 1.38283 * 107.36350 * 0.02562 * 6 4 3 9 9 C 1.46966 * 126.44182 * 179.97438 * 8 6 4 10 10 C 1.35053 * 120.00537 * 129.99260 * 9 8 6 11 11 C 1.41795 * 120.00440 * 179.97438 * 10 9 8 12 12 O 1.21757 * 119.99878 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99919 * 180.02562 * 11 10 9 14 14 C 1.40047 * 119.99752 * 185.52768 * 13 11 10 15 15 C 1.38677 * 120.10101 * 24.83905 * 14 13 11 16 16 C 1.38252 * 120.00186 * 179.97438 * 15 14 13 17 17 C 1.38301 * 120.21268 * 359.97438 * 16 15 14 18 18 C 1.38199 * 120.20664 * 0.02562 * 17 16 15 19 19 C 1.38775 * 119.99194 * 359.97438 * 18 17 16 20 20 S 1.76202 * 120.10767 * 180.02562 * 19 18 17 21 21 C 1.81394 * 102.99736 * 0.02562 * 20 19 18 22 22 C 1.50707 * 109.47147 * 179.97438 * 21 20 19 23 23 H 1.08004 * 119.99567 * 0.02562 * 22 21 20 24 24 C 1.37879 * 120.00137 * 179.97438 * 22 21 20 25 25 N 1.31516 * 119.99831 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 119.99761 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47444 * 60.00429 * 26 24 22 28 28 H 1.48508 * 109.47172 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47252 * 299.99997 * 26 24 22 30 30 H 1.08998 * 109.47388 * 270.19833 * 1 2 3 31 31 H 1.08998 * 109.46864 * 30.20329 * 1 2 3 32 32 H 1.08997 * 109.46902 * 150.19648 * 1 2 3 33 33 H 1.08999 * 109.46860 * 269.99565 * 5 4 3 34 34 H 1.09004 * 109.47180 * 29.99726 * 5 4 3 35 35 H 1.08999 * 109.47239 * 149.99753 * 5 4 3 36 36 H 1.09003 * 109.47432 * 270.00266 * 7 6 4 37 37 H 1.09006 * 109.47316 * 30.00022 * 7 6 4 38 38 H 1.09000 * 109.47214 * 150.00133 * 7 6 4 39 39 H 1.08005 * 120.00192 * 310.00070 * 9 8 6 40 40 H 1.08005 * 119.99799 * 0.02562 * 10 9 8 41 41 H 0.96995 * 120.00219 * 5.53343 * 13 11 10 42 42 H 1.07994 * 119.99626 * 359.97438 * 15 14 13 43 43 H 1.08001 * 119.88817 * 179.97438 * 16 15 14 44 44 H 1.08000 * 119.89400 * 180.27502 * 17 16 15 45 45 H 1.07997 * 120.00492 * 180.02562 * 18 17 16 46 46 H 1.09004 * 109.47576 * 299.99867 * 21 20 19 47 47 H 1.08996 * 109.47386 * 60.00012 * 21 20 19 48 48 H 0.96993 * 119.99892 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2733 1.0556 0.0000 4 7 3.6113 0.6461 -0.0056 5 6 4.7776 1.5327 -0.0129 6 6 3.6464 -0.6975 -0.0030 7 6 4.8836 -1.5580 -0.0067 8 6 2.3379 -1.1445 0.0036 9 6 1.8940 -2.5455 0.0078 10 6 0.9775 -2.9608 0.9087 11 6 0.5488 -4.3124 0.9124 12 8 1.0073 -5.0988 0.1037 13 7 -0.3663 -4.7267 1.8111 14 6 -0.7042 -6.0834 1.8917 15 6 0.1953 -7.0505 1.4691 16 6 -0.1402 -8.3893 1.5501 17 6 -1.3717 -8.7689 2.0522 18 6 -2.2748 -7.8124 2.4758 19 6 -1.9468 -6.4662 2.3984 20 16 -3.0956 -5.2441 2.9381 21 6 -4.5124 -6.2323 3.4918 22 6 -5.5992 -5.3160 3.9923 23 1 -5.4523 -4.2461 3.9783 24 6 -6.7813 -5.8434 4.4671 25 7 -6.9603 -7.1462 4.4837 26 14 -8.1285 -4.7075 5.0868 27 1 -8.5549 -3.8011 3.9906 28 1 -9.2884 -5.5165 5.5403 29 1 -7.6131 -3.9020 6.2230 30 1 -0.3634 0.0036 1.0276 31 1 -0.3633 0.8881 -0.5170 32 1 -0.3633 -0.8917 -0.5108 33 1 5.0619 1.7505 -1.0424 34 1 4.5307 2.4621 0.5003 35 1 5.6079 1.0451 0.4980 36 1 5.1774 -1.7676 -1.0352 37 1 5.6923 -1.0338 0.5026 38 1 4.6759 -2.4951 0.5100 39 1 2.3007 -3.2431 -0.7094 40 1 0.5704 -2.2633 1.6257 41 1 -0.7907 -4.0852 2.4020 42 1 1.1580 -6.7579 1.0768 43 1 0.5616 -9.1409 1.2201 44 1 -1.6267 -9.8164 2.1173 45 1 -3.2353 -8.1126 2.8677 46 1 -4.8909 -6.8239 2.6581 47 1 -4.1993 -6.8974 4.2965 48 1 -7.7917 -7.5173 4.8181 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953532.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:58 Heat of formation + Delta-G solvation = 74.677497 kcal Electronic energy + Delta-G solvation = -29231.866943 eV Core-core repulsion = 25186.725918 eV Total energy + Delta-G solvation = -4045.141025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 371.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.64662 -40.40970 -38.17384 -35.13420 -34.58712 -33.80882 -33.25630 -31.64900 -30.69746 -29.84402 -29.39381 -28.58710 -27.36200 -26.05967 -23.99488 -23.21836 -22.65305 -21.57709 -20.23822 -19.80042 -19.32355 -17.84193 -17.30594 -16.76676 -16.43018 -16.24338 -16.12238 -15.17846 -15.01918 -14.79767 -14.56115 -14.28195 -14.17595 -13.91288 -13.76992 -13.65859 -13.48836 -13.19710 -12.99510 -12.98713 -12.93886 -12.79742 -12.44980 -12.36901 -12.23118 -12.19889 -12.10250 -11.71620 -11.21290 -10.92966 -10.90909 -10.78215 -10.34738 -10.06037 -9.95296 -9.71811 -9.66262 -9.47057 -9.18541 -9.13839 -8.63543 -8.38634 -7.90544 -6.55711 -6.27460 -4.33319 0.77608 1.49653 1.68476 1.80580 2.04486 2.40084 2.43609 3.23695 3.27450 3.30794 3.31777 3.36328 3.64324 4.04386 4.13992 4.17449 4.28792 4.49185 4.59143 4.68124 4.82480 4.89718 4.91457 5.00880 5.10014 5.11291 5.20237 5.34969 5.36025 5.38737 5.42619 5.46190 5.61851 5.69216 5.70224 5.84535 5.87334 6.10101 6.23353 6.27631 6.32431 6.54532 6.57293 6.62565 6.78051 6.90944 6.95108 6.98477 7.34530 7.37571 7.58710 7.64901 7.88387 8.22596 8.67240 9.30587 10.83632 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.009924 B = 0.002037 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.721498 B =13740.773862 C =16316.972905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.105 3.895 3 N -0.301 5.301 4 N -0.366 5.366 5 C 0.098 3.902 6 C 0.110 3.890 7 C -0.096 4.096 8 C -0.237 4.237 9 C 0.042 3.958 10 C -0.223 4.223 11 C 0.552 3.448 12 O -0.537 6.537 13 N -0.656 5.656 14 C 0.152 3.848 15 C -0.118 4.118 16 C -0.123 4.123 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.098 4.098 20 S -0.171 6.171 21 C 0.078 3.922 22 C -0.520 4.520 23 H 0.068 0.932 24 C 0.068 3.932 25 N -0.889 5.889 26 Si 0.908 3.092 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.414 0.586 42 H 0.144 0.856 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.134 0.866 46 H 0.045 0.955 47 H 0.044 0.956 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.533 11.036 -8.468 28.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.062 4.062 3 N -0.123 5.123 4 N -0.146 5.146 5 C -0.043 4.043 6 C -0.020 4.020 7 C -0.154 4.154 8 C -0.249 4.249 9 C 0.020 3.980 10 C -0.245 4.245 11 C 0.344 3.656 12 O -0.417 6.417 13 N -0.299 5.299 14 C 0.051 3.949 15 C -0.139 4.139 16 C -0.144 4.144 17 C -0.140 4.140 18 C -0.139 4.139 19 C -0.213 4.213 20 S 0.075 5.925 21 C -0.069 4.069 22 C -0.559 4.559 23 H 0.086 0.914 24 C -0.136 4.136 25 N -0.526 5.526 26 Si 0.735 3.265 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.198 1.198 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.252 0.748 42 H 0.161 0.839 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.152 0.848 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 24.903 13.084 -8.906 29.507 hybrid contribution -1.152 -1.329 0.694 1.891 sum 23.751 11.755 -8.212 27.744 Atomic orbital electron populations 1.20312 0.85955 1.03892 1.03673 1.22554 0.96952 0.89401 0.97275 1.77118 0.85895 1.22683 1.26577 1.48145 1.05874 1.04156 1.56387 1.21903 0.84208 0.94555 1.03608 1.21566 0.96549 0.84576 0.99298 1.20544 0.92163 0.98851 1.03857 1.19023 0.91035 0.93684 1.21139 1.21567 0.91497 0.91511 0.93386 1.21830 1.03852 0.95417 1.03353 1.17189 0.79188 0.88989 0.80188 1.90769 1.56454 1.56263 1.38194 1.43482 1.41433 1.07545 1.37471 1.17227 0.92451 0.83274 1.01897 1.21219 0.99751 0.91777 1.01183 1.20943 0.96962 0.95379 1.01155 1.21018 0.94157 0.99048 0.99813 1.21213 1.00638 0.91094 1.01001 1.21813 0.96173 0.98130 1.05176 1.85003 1.15333 1.15516 1.76605 1.21357 0.89797 0.96554 0.99202 1.20570 0.98752 0.93108 1.43470 0.91404 1.24949 0.98146 0.95419 0.95133 1.69931 1.26485 1.10737 1.45450 0.86381 0.80468 0.80266 0.79373 1.19827 1.20987 1.19849 0.89837 0.90584 0.89837 0.90468 0.89017 0.89336 0.89560 0.90797 0.89053 0.84885 0.85432 0.74842 0.83869 0.86223 0.86207 0.84790 0.93708 0.93745 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 9.61 36.01 0.35 -0.37 16 2 C 0.10 1.14 7.23 -81.97 -0.59 0.55 16 3 N -0.30 -3.46 12.49 33.92 0.42 -3.04 16 4 N -0.37 -3.24 3.98 -63.24 -0.25 -3.49 16 5 C 0.10 0.42 11.25 59.85 0.67 1.10 16 6 C 0.11 0.94 7.02 -81.45 -0.57 0.36 16 7 C -0.10 -0.47 9.93 36.00 0.36 -0.11 16 8 C -0.24 -2.42 5.83 -105.13 -0.61 -3.03 16 9 C 0.04 0.43 8.97 -37.18 -0.33 0.09 16 10 C -0.22 -2.50 8.72 -39.36 -0.34 -2.84 16 11 C 0.55 7.90 7.37 -14.90 -0.11 7.79 16 12 O -0.54 -8.92 13.27 5.14 0.07 -8.85 16 13 N -0.66 -10.02 5.16 -12.26 -0.06 -10.08 16 14 C 0.15 2.68 6.44 -83.46 -0.54 2.15 16 15 C -0.12 -1.94 8.72 -39.41 -0.34 -2.29 16 16 C -0.12 -1.85 10.04 -39.55 -0.40 -2.25 16 17 C -0.12 -1.91 10.04 -39.57 -0.40 -2.31 16 18 C -0.11 -2.15 9.36 -39.40 -0.37 -2.52 16 19 C -0.10 -1.88 6.12 -38.90 -0.24 -2.12 16 20 S -0.17 -3.58 20.55 -107.50 -2.21 -5.78 16 21 C 0.08 1.94 4.09 36.01 0.15 2.09 16 22 C -0.52 -14.07 9.13 -34.44 -0.31 -14.39 16 23 H 0.07 1.81 7.71 -52.48 -0.40 1.41 16 24 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 25 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 26 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.73 7.82 -51.93 -0.41 0.32 16 33 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.16 7.02 -51.93 -0.36 -0.20 16 36 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.22 7.06 -51.93 -0.37 -0.15 16 38 H 0.09 0.46 7.97 -51.93 -0.41 0.04 16 39 H 0.13 1.37 7.45 -52.48 -0.39 0.98 16 40 H 0.13 1.25 7.87 -52.48 -0.41 0.83 16 41 H 0.41 5.83 7.60 -40.82 -0.31 5.52 16 42 H 0.14 2.32 5.78 -52.49 -0.30 2.01 16 43 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.13 2.66 5.88 -52.49 -0.31 2.35 16 46 H 0.04 1.18 7.75 -51.92 -0.40 0.77 16 47 H 0.04 1.16 7.75 -51.93 -0.40 0.75 16 48 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 417.73 15.07 6.30 6.30 Total: -1.00 -33.30 417.73 -10.34 -43.64 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.58 Total: 6.24 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -3.73 Total: -16.33 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.85 Total: -40.96 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.07 Total: -8.85 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -2.21 Total: -5.78 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.30 -10.34 -43.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953532.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.315 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds