Wall clock time and date at job start Tue Mar 31 2020 06:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47629 * 2 1 4 4 S 1.81397 * 109.46859 * 239.99503 * 2 1 3 5 5 C 1.76196 * 102.99841 * 67.50375 * 4 2 1 6 6 C 1.39280 * 119.92770 * 264.34353 * 5 4 2 7 7 C 1.37593 * 120.07059 * 179.72736 * 6 5 4 8 8 C 1.39858 * 119.92889 * 0.51921 * 7 6 5 9 9 C 1.43199 * 120.07190 * 179.72855 * 8 7 6 10 10 N 7.71465 * 79.84838 * 297.33203 * 2 1 3 11 11 C 1.39830 * 119.85975 * 359.75154 * 8 7 6 12 12 C 1.50697 * 120.03654 * 179.97438 * 11 8 7 13 13 F 1.39899 * 109.47406 * 180.02562 * 12 11 8 14 14 F 1.39903 * 109.47022 * 300.02541 * 12 11 8 15 15 F 1.39901 * 109.47161 * 60.02428 * 12 11 8 16 16 C 1.37621 * 119.92726 * 0.02562 * 11 8 7 17 17 C 1.50700 * 109.46839 * 120.00051 * 2 1 3 18 18 O 1.21283 * 120.00067 * 99.99138 * 17 2 1 19 19 N 1.34775 * 119.99928 * 279.99918 * 17 2 1 20 20 C 1.46497 * 120.00156 * 359.97438 * 19 17 2 21 21 C 1.46510 * 119.99978 * 180.02562 * 19 17 2 22 22 C 1.50694 * 109.47028 * 89.99719 * 21 19 17 23 23 H 1.07999 * 120.00544 * 359.97438 * 22 21 19 24 24 C 1.37878 * 119.99902 * 179.97438 * 22 21 19 25 25 N 1.31514 * 119.99845 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00219 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46867 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46838 * 120.00237 * 26 24 22 29 29 H 1.48497 * 109.47178 * 240.00073 * 26 24 22 30 30 H 1.09003 * 109.47014 * 293.99064 * 1 2 3 31 31 H 1.09001 * 109.46649 * 53.98305 * 1 2 3 32 32 H 1.08997 * 109.47710 * 173.98572 * 1 2 3 33 33 H 1.08005 * 119.96405 * 359.97438 * 6 5 4 34 34 H 1.07999 * 120.03593 * 180.27848 * 7 6 5 35 35 H 1.08005 * 119.96344 * 179.97438 * 16 11 8 36 36 H 1.08994 * 109.47427 * 270.00658 * 20 19 17 37 37 H 1.09002 * 109.47126 * 30.00736 * 20 19 17 38 38 H 1.09004 * 109.46854 * 150.00010 * 20 19 17 39 39 H 1.09002 * 109.46725 * 209.99672 * 21 19 17 40 40 H 1.09000 * 109.46526 * 329.99176 * 21 19 17 41 41 H 0.97005 * 120.00169 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 16 2.1346 -0.8553 -1.4811 5 6 1.6474 0.2220 -2.7874 6 6 0.4572 -0.0105 -3.4724 7 6 0.0710 0.8321 -4.4893 8 6 0.8805 1.9167 -4.8421 9 6 0.4845 2.7922 -5.9039 10 7 0.1703 3.4867 -6.7461 11 6 2.0776 2.1441 -4.1562 12 6 2.9531 3.3112 -4.5334 13 9 4.0857 3.3292 -3.7123 14 9 3.3479 3.1853 -5.8697 15 9 2.2386 4.5027 -4.3686 16 6 2.4559 1.3003 -3.1370 17 6 2.0323 -0.7104 1.2305 18 8 2.4062 -1.8618 1.1558 19 7 2.0658 -0.0664 2.4139 20 6 1.6145 1.3244 2.5041 21 6 2.5546 -0.7569 3.6101 22 6 4.0412 -0.5464 3.7394 23 1 4.5692 0.0425 3.0039 24 6 4.7273 -1.1055 4.7966 25 7 4.0844 -1.8229 5.6919 26 14 6.5701 -0.8451 4.9565 27 1 7.0513 -0.0074 3.8288 28 1 6.8636 -0.1608 6.2414 29 1 7.2601 -2.1597 4.9269 30 1 -0.3633 0.4178 0.9389 31 1 -0.3633 0.6043 -0.8312 32 1 -0.3634 -1.0219 -0.1077 33 1 -0.1654 -0.8508 -3.2024 34 1 -0.8542 0.6539 -5.0171 35 1 3.3806 1.4752 -2.6071 36 1 2.4568 1.9921 2.3236 37 1 0.8415 1.5047 1.7571 38 1 1.2093 1.5111 3.4986 39 1 2.0530 -0.3566 4.4911 40 1 2.3445 -1.8231 3.5254 41 1 4.5671 -2.2166 6.4355 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096007256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:41 Heat of formation + Delta-G solvation = -117.139427 kcal Electronic energy + Delta-G solvation = -30615.601161 eV Core-core repulsion = 25786.733833 eV Total energy + Delta-G solvation = -4828.867328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 372.086 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.62275 -48.12527 -48.08138 -40.19648 -39.24633 -37.03576 -34.99662 -33.49566 -32.88393 -32.35324 -32.02874 -27.86366 -26.89754 -26.13630 -24.76014 -24.52635 -22.90667 -22.48123 -20.07455 -19.23186 -18.94872 -18.88907 -18.40069 -16.89209 -16.80339 -16.51911 -16.20672 -15.71338 -15.27038 -15.14804 -14.86083 -14.76150 -14.67348 -14.58284 -14.45505 -14.25833 -14.20975 -14.17666 -13.93602 -13.53902 -13.46983 -13.35077 -13.19127 -13.01003 -12.74288 -12.28764 -12.17901 -12.06735 -11.99626 -11.87581 -11.54980 -11.27164 -10.90799 -10.65005 -10.60993 -10.20540 -10.01210 -9.68445 -9.41429 -9.11730 -8.48625 -7.92183 -7.76864 -6.09745 -4.14540 -0.38519 0.33541 1.23454 1.98258 1.99512 2.10032 2.47207 2.97205 3.02696 3.18525 3.19229 3.27625 3.35771 3.39715 3.46478 3.74617 3.89363 4.09339 4.40539 4.44800 4.50365 4.56915 4.72658 4.82387 4.98641 5.01205 5.09567 5.25213 5.32613 5.37574 5.42495 5.51285 5.56566 5.79410 5.81714 5.91696 6.10083 6.78904 6.90087 7.32333 7.40455 7.85817 8.15422 8.21108 8.76435 8.93087 9.50815 10.98472 Molecular weight = 372.09amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.002343 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.446768 B =11946.189366 C =12995.988998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 H 0.107 0.893 4 S -0.054 6.054 5 C -0.107 4.107 6 C -0.038 4.038 7 C -0.078 4.078 8 C 0.042 3.958 9 C 0.233 3.767 10 N -0.376 5.376 11 C -0.150 4.150 12 C 0.506 3.494 13 F -0.167 7.167 14 F -0.172 7.172 15 F -0.172 7.172 16 C -0.026 4.026 17 C 0.526 3.474 18 O -0.521 6.521 19 N -0.594 5.594 20 C 0.077 3.923 21 C 0.246 3.754 22 C -0.527 4.527 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.894 5.894 26 Si 0.898 3.102 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.282 1.282 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.035 0.965 40 H 0.045 0.955 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.308 8.634 -19.552 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.239 4.239 3 H 0.126 0.874 4 S 0.179 5.821 5 C -0.219 4.219 6 C -0.059 4.059 7 C -0.100 4.100 8 C 0.038 3.962 9 C -0.084 4.084 10 N -0.051 5.051 11 C -0.156 4.156 12 C 0.451 3.549 13 F -0.148 7.148 14 F -0.153 7.153 15 F -0.153 7.153 16 C -0.047 4.047 17 C 0.310 3.690 18 O -0.398 6.398 19 N -0.326 5.326 20 C -0.067 4.067 21 C 0.127 3.873 22 C -0.566 4.566 23 H 0.077 0.923 24 C -0.141 4.141 25 N -0.533 5.533 26 Si 0.726 3.274 27 H -0.197 1.197 28 H -0.210 1.210 29 H -0.208 1.208 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.174 0.826 34 H 0.169 0.831 35 H 0.177 0.823 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.964 8.019 -20.717 24.347 hybrid contribution 0.755 1.507 0.495 1.756 sum -9.209 9.526 -20.222 24.176 Atomic orbital electron populations 1.22077 0.91038 1.04050 1.03052 1.23756 1.00847 1.03511 0.95773 0.87442 1.86542 1.75450 1.26373 0.93694 1.22550 0.97244 0.99411 1.02688 1.21921 0.94007 0.97633 0.92291 1.21295 0.99427 0.92226 0.97039 1.15773 0.94217 0.94178 0.91994 1.25491 0.95051 0.94077 0.93731 1.81274 1.06520 1.07898 1.09363 1.20021 0.96116 0.98070 1.01394 1.18189 0.79006 0.82586 0.75119 1.93227 1.52765 1.96573 1.72212 1.93255 1.91402 1.95915 1.34735 1.93256 1.77925 1.48956 1.95168 1.21613 0.99363 0.90870 0.92852 1.19254 0.79603 0.86851 0.83339 1.90726 1.47605 1.17015 1.84407 1.48071 1.62167 1.12620 1.09716 1.21786 0.98855 0.83581 1.02445 1.19381 0.94412 0.93716 0.79754 1.21433 0.92937 1.32736 1.09470 0.92338 1.24934 0.98739 0.94846 0.95563 1.69936 1.36081 1.33847 1.13459 0.86436 0.85033 0.78092 0.77849 1.19716 1.20966 1.20802 0.90675 0.91752 0.90361 0.82557 0.83052 0.82292 0.92919 0.92319 0.90968 0.94735 0.93656 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.69 37.16 0.32 -1.04 16 2 C -0.11 -1.37 2.29 -27.88 -0.06 -1.44 16 3 H 0.11 1.20 7.21 -51.92 -0.37 0.82 16 4 S -0.05 -0.67 20.32 -107.50 -2.18 -2.86 16 5 C -0.11 -0.90 5.34 -38.82 -0.21 -1.10 16 6 C -0.04 -0.22 9.48 -39.43 -0.37 -0.59 16 7 C -0.08 -0.39 9.75 -39.21 -0.38 -0.77 16 8 C 0.04 0.31 5.72 -106.77 -0.61 -0.30 16 9 C 0.23 2.12 13.18 -22.47 -0.30 1.82 16 10 N -0.38 -4.21 18.54 41.84 0.78 -3.43 16 11 C -0.15 -1.23 5.40 -104.25 -0.56 -1.79 16 12 C 0.51 4.76 2.89 36.00 0.10 4.86 16 13 F -0.17 -1.61 15.97 2.25 0.04 -1.57 16 14 F -0.17 -1.76 16.52 2.25 0.04 -1.73 16 15 F -0.17 -1.75 16.52 2.25 0.04 -1.71 16 16 C -0.03 -0.22 9.16 -39.44 -0.36 -0.58 16 17 C 0.53 9.94 6.85 -10.99 -0.08 9.86 16 18 O -0.52 -12.25 15.62 5.55 0.09 -12.16 16 19 N -0.59 -11.58 2.86 -182.95 -0.52 -12.10 16 20 C 0.08 1.09 9.89 59.85 0.59 1.68 16 21 C 0.25 6.12 5.20 -5.19 -0.03 6.09 16 22 C -0.53 -14.45 9.39 -34.44 -0.32 -14.77 16 23 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 24 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 25 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 26 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 29 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 30 H 0.07 0.70 6.45 -51.93 -0.34 0.36 16 31 H 0.06 0.44 7.61 -51.93 -0.40 0.05 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.16 0.63 8.06 -52.48 -0.42 0.20 16 34 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16 35 H 0.16 1.29 7.14 -52.48 -0.37 0.91 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.61 4.85 -51.93 -0.25 0.36 16 38 H 0.07 0.98 7.89 -51.93 -0.41 0.57 16 39 H 0.03 0.86 7.89 -51.93 -0.41 0.45 16 40 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 384.17 15.07 5.79 5.79 Total: -1.00 -33.54 384.17 -6.76 -40.30 By element: Atomic # 1 Polarization: -1.13 SS G_CDS: -4.17 Total: -5.30 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -2.36 Total: 3.54 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.99 Total: -40.72 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.11 Total: -5.01 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -0.67 SS G_CDS: -2.18 Total: -2.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.54 -6.76 -40.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096007256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.835 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds