Wall clock time and date at job start Tue Mar 31 2020 06:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 S 1.81402 * 109.47170 * 119.99627 * 2 1 3 5 5 C 1.76201 * 103.00211 * 292.60407 * 4 2 1 6 6 C 1.39270 * 119.92964 * 95.33443 * 5 4 2 7 7 C 1.37586 * 120.06790 * 179.97438 * 6 5 4 8 8 C 1.39861 * 119.92955 * 0.02562 * 7 6 5 9 9 C 1.43204 * 120.06919 * 180.02562 * 8 7 6 10 10 N 7.71504 * 79.77404 * 62.71419 * 2 1 3 11 11 C 1.39815 * 119.86297 * 359.97438 * 8 7 6 12 12 C 1.50699 * 120.04076 * 180.02562 * 11 8 7 13 13 F 1.39899 * 109.47469 * 180.02562 * 12 11 8 14 14 F 1.39902 * 109.46988 * 300.00158 * 12 11 8 15 15 F 1.39901 * 109.47277 * 59.99747 * 12 11 8 16 16 C 1.37628 * 119.92823 * 359.72856 * 11 8 7 17 17 C 1.50699 * 109.47308 * 239.99805 * 2 1 3 18 18 O 1.21277 * 119.99941 * 265.00146 * 17 2 1 19 19 N 1.34778 * 119.99867 * 85.00065 * 17 2 1 20 20 C 1.46499 * 120.00120 * 359.97438 * 19 17 2 21 21 C 1.46501 * 119.99830 * 180.02562 * 19 17 2 22 22 C 1.50701 * 109.47411 * 89.99800 * 21 19 17 23 23 H 1.08004 * 119.99573 * 0.02562 * 22 21 19 24 24 C 1.37876 * 119.99896 * 179.97438 * 22 21 19 25 25 N 1.31515 * 120.00076 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99847 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47185 * 89.99879 * 26 24 22 28 28 H 1.48497 * 109.47315 * 210.00199 * 26 24 22 29 29 H 1.48502 * 109.47395 * 330.00314 * 26 24 22 30 30 H 1.09001 * 109.47219 * 305.80716 * 1 2 3 31 31 H 1.09000 * 109.47007 * 65.80985 * 1 2 3 32 32 H 1.09003 * 109.46892 * 185.80883 * 1 2 3 33 33 H 1.08001 * 119.96812 * 0.03052 * 6 5 4 34 34 H 1.08010 * 120.03537 * 180.02562 * 7 6 5 35 35 H 1.07998 * 119.96957 * 180.27268 * 16 11 8 36 36 H 1.08999 * 109.47560 * 90.00247 * 20 19 17 37 37 H 1.09000 * 109.47272 * 210.00406 * 20 19 17 38 38 H 1.09001 * 109.47237 * 329.99753 * 20 19 17 39 39 H 1.09003 * 109.46692 * 209.99488 * 21 19 17 40 40 H 1.08994 * 109.46978 * 329.99526 * 21 19 17 41 41 H 0.97001 * 119.99665 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8550 1.4812 5 6 1.6447 0.2208 2.7878 6 6 0.4511 -0.0100 3.4672 7 6 0.0660 0.8280 4.4883 8 6 0.8743 1.9127 4.8432 9 6 0.4767 2.7865 5.9059 10 7 0.1604 3.4806 6.7477 11 6 2.0720 2.1417 4.1592 12 6 2.9464 3.3089 4.5387 13 9 4.0794 3.3292 3.7183 14 9 2.2311 4.5000 4.3748 15 9 3.3401 3.1816 5.8752 16 6 2.4547 1.2963 3.1428 17 6 2.0324 -0.7104 -1.2304 18 8 2.3208 -1.8871 -1.1759 19 7 2.1611 -0.0381 -2.3914 20 6 1.8122 1.3832 -2.4574 21 6 2.6490 -0.7289 -3.5877 22 6 1.4817 -1.3084 -4.3443 23 1 0.4768 -1.1751 -3.9716 24 6 1.6964 -2.0079 -5.5129 25 7 2.9200 -2.1689 -5.9675 26 14 0.2495 -2.7269 -6.4504 27 1 -0.2497 -1.7297 -7.4311 28 1 0.6843 -3.9521 -7.1680 29 1 -0.8364 -3.0704 -5.4974 30 1 -0.3634 0.6012 0.8334 31 1 -0.3633 0.4211 -0.9374 32 1 -0.3633 -1.0224 0.1040 33 1 -0.1725 -0.8481 3.1930 34 1 -0.8596 0.6483 5.0151 35 1 3.3819 1.4699 2.6169 36 1 2.6906 1.9844 -2.2228 37 1 1.4636 1.6256 -3.4613 38 1 1.0225 1.5973 -1.7372 39 1 3.1796 -0.0213 -4.2247 40 1 3.3256 -1.5311 -3.2934 41 1 3.0710 -2.6613 -6.7895 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096007257.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:43 Heat of formation + Delta-G solvation = -118.219873 kcal Electronic energy + Delta-G solvation = -30536.986281 eV Core-core repulsion = 25708.072101 eV Total energy + Delta-G solvation = -4828.914180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 372.086 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.65284 -48.15915 -48.10766 -40.21300 -39.23204 -37.04573 -34.98798 -33.45162 -32.89607 -32.37398 -32.04147 -27.90382 -26.91870 -26.10870 -24.77193 -24.48919 -22.92703 -22.49442 -20.09342 -19.22782 -18.97602 -18.91844 -18.39321 -16.90453 -16.76350 -16.59064 -16.22471 -15.63034 -15.28591 -15.16891 -14.91286 -14.82404 -14.64106 -14.60477 -14.48038 -14.28552 -14.24021 -14.21017 -13.96657 -13.52479 -13.42203 -13.35548 -13.21579 -12.99503 -12.74965 -12.22921 -12.14271 -12.06126 -12.00726 -11.84661 -11.62316 -11.26443 -10.95367 -10.65527 -10.62515 -10.22599 -10.02621 -9.71514 -9.42198 -9.11373 -8.49831 -7.93630 -7.78363 -6.10726 -4.16021 -0.39864 0.31769 1.21484 1.96452 1.98306 2.07570 2.45260 2.95759 3.00802 3.16432 3.18871 3.25847 3.33285 3.37165 3.43858 3.77142 3.86699 4.07476 4.38318 4.43901 4.48476 4.55472 4.73992 4.84288 4.99150 5.00569 5.07408 5.24035 5.31702 5.45219 5.46553 5.49848 5.61491 5.78047 5.79029 5.99773 6.12772 6.77867 6.90905 7.33459 7.39766 7.84378 8.14272 8.21754 8.76141 8.91915 9.49204 10.97418 Molecular weight = 372.09amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.002087 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.598444 B =13415.055424 C =13918.753031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.106 0.894 4 S -0.060 6.060 5 C -0.106 4.106 6 C -0.037 4.037 7 C -0.077 4.077 8 C 0.042 3.958 9 C 0.232 3.768 10 N -0.376 5.376 11 C -0.151 4.151 12 C 0.506 3.494 13 F -0.167 7.167 14 F -0.172 7.172 15 F -0.172 7.172 16 C -0.027 4.027 17 C 0.526 3.474 18 O -0.521 6.521 19 N -0.594 5.594 20 C 0.077 3.923 21 C 0.246 3.754 22 C -0.528 4.528 23 H 0.058 0.942 24 C 0.062 3.938 25 N -0.893 5.893 26 Si 0.898 3.102 27 H -0.280 1.280 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.035 0.965 40 H 0.046 0.954 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.089 10.498 20.980 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.237 4.237 3 H 0.124 0.876 4 S 0.174 5.826 5 C -0.218 4.218 6 C -0.058 4.058 7 C -0.099 4.099 8 C 0.039 3.961 9 C -0.084 4.084 10 N -0.050 5.050 11 C -0.157 4.157 12 C 0.451 3.549 13 F -0.148 7.148 14 F -0.153 7.153 15 F -0.153 7.153 16 C -0.047 4.047 17 C 0.309 3.691 18 O -0.398 6.398 19 N -0.326 5.326 20 C -0.067 4.067 21 C 0.127 3.873 22 C -0.567 4.567 23 H 0.076 0.924 24 C -0.141 4.141 25 N -0.532 5.532 26 Si 0.726 3.274 27 H -0.206 1.206 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.175 0.825 34 H 0.170 0.830 35 H 0.177 0.823 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.698 9.891 22.152 24.540 hybrid contribution -1.125 0.954 -0.920 1.739 sum -4.823 10.845 21.232 24.324 Atomic orbital electron populations 1.22025 0.90854 1.04185 1.03016 1.23762 1.01164 1.03192 0.95577 0.87575 1.86467 1.75184 1.26987 0.93953 1.22510 0.97252 0.99414 1.02590 1.21934 0.94025 0.97625 0.92185 1.21307 0.99445 0.92224 0.96962 1.15773 0.94220 0.94167 0.91961 1.25494 0.95059 0.94086 0.93741 1.81278 1.06490 1.07868 1.09377 1.20012 0.96106 0.98052 1.01487 1.18185 0.78955 0.82605 0.75121 1.93219 1.52776 1.96583 1.72270 1.93258 1.77884 1.48969 1.95177 1.93256 1.91426 1.95901 1.34710 1.21590 0.99376 0.90863 0.92903 1.19269 0.79472 0.87068 0.83274 1.90725 1.49654 1.15106 1.84268 1.48084 1.63849 1.09886 1.10748 1.21761 0.99306 0.82313 1.03344 1.19362 0.95381 0.92814 0.79730 1.21388 0.93313 1.34797 1.07222 0.92426 1.24936 0.95954 0.95881 0.97298 1.69927 1.19641 1.41381 1.22233 0.86491 0.82448 0.78698 0.79753 1.20639 1.21036 1.19866 0.91860 0.90632 0.90257 0.82508 0.83022 0.82334 0.93423 0.90332 0.92338 0.94703 0.93619 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.75 37.16 0.33 -1.19 16 2 C -0.11 -1.36 2.29 -27.88 -0.06 -1.42 16 3 H 0.11 1.12 6.92 -51.92 -0.36 0.76 16 4 S -0.06 -0.72 20.38 -107.50 -2.19 -2.91 16 5 C -0.11 -0.86 5.33 -38.83 -0.21 -1.07 16 6 C -0.04 -0.22 9.44 -39.44 -0.37 -0.59 16 7 C -0.08 -0.39 9.74 -39.21 -0.38 -0.77 16 8 C 0.04 0.30 5.72 -106.77 -0.61 -0.31 16 9 C 0.23 2.09 13.18 -22.47 -0.30 1.79 16 10 N -0.38 -4.16 18.54 41.84 0.78 -3.39 16 11 C -0.15 -1.17 5.40 -104.26 -0.56 -1.74 16 12 C 0.51 4.51 2.89 36.01 0.10 4.61 16 13 F -0.17 -1.48 15.97 2.25 0.04 -1.45 16 14 F -0.17 -1.68 16.52 2.25 0.04 -1.64 16 15 F -0.17 -1.68 16.52 2.25 0.04 -1.65 16 16 C -0.03 -0.20 9.16 -39.43 -0.36 -0.57 16 17 C 0.53 9.96 6.80 -10.99 -0.07 9.88 16 18 O -0.52 -12.27 15.72 5.56 0.09 -12.19 16 19 N -0.59 -11.60 2.86 -182.96 -0.52 -12.12 16 20 C 0.08 1.08 9.87 59.85 0.59 1.67 16 21 C 0.25 6.11 5.16 -5.19 -0.03 6.09 16 22 C -0.53 -14.31 9.39 -34.44 -0.32 -14.63 16 23 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 24 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 25 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 26 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 29 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 30 H 0.06 0.49 7.57 -51.93 -0.39 0.09 16 31 H 0.07 0.84 6.97 -51.93 -0.36 0.48 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.15 0.37 8.06 -52.48 -0.42 -0.05 16 35 H 0.16 1.14 7.14 -52.49 -0.37 0.76 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 38 H 0.06 0.65 5.24 -51.93 -0.27 0.37 16 39 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 40 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -33.15 385.15 -6.80 -39.95 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -4.22 Total: -4.85 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -2.36 Total: 3.37 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.99 Total: -40.56 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.11 Total: -4.74 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -2.19 Total: -2.91 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.15 -6.80 -39.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096007257.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.266 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds