Wall clock time and date at job start Tue Mar 31 2020 05:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 119.99931 * 2 1 4 4 N 1.34778 * 119.99798 * 179.97438 * 2 1 3 5 5 C 1.46498 * 120.00159 * 180.02562 * 4 2 1 6 6 C 1.50693 * 109.47340 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99931 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00137 * 179.97438 * 6 5 4 9 9 C 1.46925 * 120.58479 * 180.02562 * 8 6 5 10 10 C 1.53266 * 108.72785 * 125.94632 * 9 8 6 11 11 C 1.52605 * 109.35611 * 53.94798 * 10 9 8 12 12 C 1.52585 * 110.64410 * 299.70340 * 11 10 9 13 13 C 1.46925 * 120.58023 * 359.97438 * 8 6 5 14 14 C 1.50776 * 110.58185 * 177.05079 * 11 10 9 15 15 C 1.37650 * 133.14739 * 61.50665 * 14 11 10 16 16 C 1.38407 * 119.97231 * 180.44331 * 15 14 11 17 17 C 1.38329 * 119.85037 * 359.97438 * 16 15 14 18 18 C 1.37903 * 120.35899 * 0.02562 * 17 16 15 19 19 C 1.39095 * 106.13209 * 241.85627 * 14 11 10 20 20 N 1.39439 * 110.24077 * 359.65539 * 19 14 11 21 21 C 1.37141 * 123.88436 * 180.02562 * 20 19 14 22 22 H 1.07991 * 119.99846 * 326.67581 * 21 20 19 23 23 C 1.38887 * 119.99793 * 146.66588 * 21 20 19 24 24 N 1.31422 * 120.00312 * 338.60583 * 23 21 20 25 25 Si 1.86798 * 119.99588 * 158.60296 * 23 21 20 26 26 H 1.48506 * 109.47406 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.47386 * 120.00274 * 25 23 21 28 28 H 1.48507 * 109.47118 * 240.00152 * 25 23 21 29 29 C 1.34497 * 112.23697 * 0.04140 * 20 19 14 30 30 O 1.21282 * 126.52320 * 180.02562 * 29 20 19 31 31 H 1.08998 * 109.47506 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47647 * 300.00441 * 1 2 3 33 33 H 1.09007 * 109.46991 * 59.99758 * 1 2 3 34 34 H 0.97000 * 119.99832 * 359.97438 * 4 2 1 35 35 H 1.09001 * 109.47174 * 59.99252 * 5 4 2 36 36 H 1.09010 * 109.46683 * 300.00231 * 5 4 2 37 37 H 1.09007 * 109.59314 * 6.17258 * 9 8 6 38 38 H 1.09002 * 109.59636 * 245.71855 * 9 8 6 39 39 H 1.09000 * 109.48659 * 293.98396 * 10 9 8 40 40 H 1.08996 * 109.51000 * 173.92775 * 10 9 8 41 41 H 1.08994 * 109.48724 * 180.23686 * 12 11 10 42 42 H 1.09001 * 109.48462 * 300.30360 * 12 11 10 43 43 H 1.08993 * 109.59204 * 353.81098 * 13 8 6 44 44 H 1.08996 * 109.59063 * 114.25718 * 13 8 6 45 45 H 1.08003 * 120.01385 * 0.41610 * 15 14 11 46 46 H 1.08000 * 120.07213 * 180.02562 * 16 15 14 47 47 H 1.08001 * 119.81633 * 179.97438 * 17 16 15 48 48 H 1.08005 * 119.92448 * 180.02562 * 18 17 16 49 49 H 0.97003 * 119.99939 * 183.73726 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0011 6 6 4.1481 -2.5881 0.0022 7 8 3.3599 -3.5099 0.0030 8 7 5.4732 -2.8344 0.0024 9 6 5.9770 -4.2146 0.0029 10 6 6.9462 -4.3852 -1.1720 11 6 8.0261 -3.3095 -1.0971 12 6 7.4053 -1.9177 -1.1730 13 6 6.4393 -1.7275 0.0009 14 6 9.0368 -3.4954 -2.2005 15 6 8.9456 -3.4750 -3.5738 16 6 10.0741 -3.6931 -4.3450 17 6 11.2913 -3.9305 -3.7324 18 6 11.3870 -3.9517 -2.3568 19 6 10.2551 -3.7325 -1.5727 20 7 10.0977 -3.7036 -0.1875 21 6 11.1218 -3.9028 0.7027 22 1 11.9255 -4.5814 0.4581 23 6 11.1253 -3.2317 1.9186 24 7 10.4261 -2.1281 2.0622 25 14 12.1237 -3.8976 3.3501 26 1 12.8168 -5.1432 2.9332 27 1 13.1298 -2.8870 3.7646 28 1 11.2189 -4.1919 4.4903 29 6 8.8261 -3.4583 0.1753 30 8 8.4016 -3.3771 1.3085 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.6958 -2.0073 0.0013 35 1 4.0089 -0.6532 0.8910 36 1 4.0095 -0.6536 -0.8890 37 1 5.1432 -4.9081 -0.1073 38 1 6.4990 -4.4129 0.9391 39 1 6.4005 -4.2879 -2.1106 40 1 7.4099 -5.3703 -1.1214 41 1 8.1923 -1.1653 -1.1222 42 1 6.8615 -1.8129 -2.1119 43 1 5.9104 -0.7810 -0.1109 44 1 6.9975 -1.7283 0.9370 45 1 7.9939 -3.2894 -4.0494 46 1 10.0045 -3.6771 -5.4226 47 1 12.1714 -4.1010 -4.3347 48 1 12.3410 -4.1374 -1.8858 49 1 10.4712 -1.6301 2.8934 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096241409.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:55 Heat of formation + Delta-G solvation = -53.639172 kcal Electronic energy + Delta-G solvation = -34921.071441 eV Core-core repulsion = 30427.613316 eV Total energy + Delta-G solvation = -4493.458125 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 371.168 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.32898 -40.19327 -39.20066 -37.56981 -36.67503 -34.69628 -34.58416 -33.71240 -32.07920 -31.30994 -30.48498 -29.82165 -28.65934 -27.31044 -26.15228 -24.69190 -23.12729 -22.23328 -21.54924 -20.80585 -20.63191 -19.95602 -18.64819 -17.58214 -17.43999 -16.74176 -16.20940 -16.13836 -15.90666 -15.39781 -15.22063 -15.10277 -14.98149 -14.80591 -14.46846 -13.90098 -13.75582 -13.48215 -13.35812 -13.33787 -13.17887 -12.99396 -12.82602 -12.67840 -12.51307 -12.27631 -12.14084 -11.91953 -11.79865 -11.69438 -11.61578 -11.14907 -11.06528 -10.93863 -10.86165 -10.55831 -10.42241 -10.14825 -10.05976 -9.82521 -9.78342 -9.35186 -8.89077 -8.62628 -8.30875 -8.14916 -7.07049 -6.50139 -4.19179 1.86887 1.96871 2.43040 2.56470 2.72950 3.10031 3.19543 3.22339 3.32005 3.70366 3.97362 4.36529 4.47884 4.56148 4.64584 4.79220 4.88292 4.94440 5.04943 5.10852 5.11834 5.22051 5.25858 5.26240 5.32446 5.43992 5.52548 5.54756 5.59120 5.67448 5.72651 5.88488 5.95902 6.00950 6.07691 6.10589 6.17781 6.24971 6.34001 6.37624 6.45539 6.56523 6.65890 6.93615 7.04345 7.08716 7.26918 7.31534 7.45532 7.47959 7.82057 8.00749 8.09939 8.46183 8.69461 9.11223 9.74193 10.55331 Molecular weight = 371.17amu Principal moments of inertia in cm(-1) A = 0.010272 B = 0.003013 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.213887 B = 9290.409197 C =10994.703084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.511 3.489 3 O -0.550 6.550 4 N -0.717 5.717 5 C 0.098 3.902 6 C 0.509 3.491 7 O -0.553 6.553 8 N -0.589 5.589 9 C 0.107 3.893 10 C -0.100 4.100 11 C -0.049 4.049 12 C -0.099 4.099 13 C 0.096 3.904 14 C -0.169 4.169 15 C -0.059 4.059 16 C -0.188 4.188 17 C -0.082 4.082 18 C -0.158 4.158 19 C 0.173 3.827 20 N -0.379 5.379 21 C -0.371 4.371 22 H 0.095 0.905 23 C 0.065 3.935 24 N -0.817 5.817 25 Si 0.922 3.078 26 H -0.267 1.267 27 H -0.280 1.280 28 H -0.277 1.277 29 C 0.505 3.495 30 O -0.479 6.479 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.412 0.588 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.115 0.885 48 H 0.119 0.881 49 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.871 0.237 -8.114 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.298 3.702 3 O -0.428 6.428 4 N -0.373 5.373 5 C -0.029 4.029 6 C 0.297 3.703 7 O -0.433 6.433 8 N -0.320 5.320 9 C -0.015 4.015 10 C -0.138 4.138 11 C -0.053 4.053 12 C -0.137 4.137 13 C -0.026 4.026 14 C -0.172 4.172 15 C -0.077 4.077 16 C -0.208 4.208 17 C -0.101 4.101 18 C -0.179 4.179 19 C 0.071 3.929 20 N -0.083 5.083 21 C -0.497 4.497 22 H 0.113 0.887 23 C -0.148 4.148 24 N -0.448 5.448 25 Si 0.748 3.252 26 H -0.192 1.192 27 H -0.206 1.206 28 H -0.202 1.202 29 C 0.293 3.707 30 O -0.354 6.354 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.250 0.750 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.121 0.879 45 H 0.129 0.871 46 H 0.131 0.869 47 H 0.133 0.867 48 H 0.137 0.863 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.128 0.673 -7.089 13.212 hybrid contribution 0.713 -0.515 0.608 1.069 sum -10.415 0.157 -6.481 12.268 Atomic orbital electron populations 1.21822 0.91278 1.04397 1.05321 1.20830 0.90739 0.83103 0.75533 1.90741 1.70744 1.31399 1.49916 1.45905 1.06181 1.09886 1.75332 1.21132 0.82032 0.94926 1.04852 1.20366 0.82573 0.90791 0.76596 1.90645 1.54799 1.45947 1.51871 1.47950 1.04763 1.08337 1.70987 1.21810 0.97579 0.81952 1.00111 1.21594 0.95142 0.98361 0.98732 1.19758 0.94775 0.96673 0.94070 1.21546 0.98478 0.95606 0.98080 1.22068 0.90849 0.88066 1.01659 1.19616 0.94243 1.09902 0.93479 1.19990 0.97995 0.98505 0.91242 1.20667 0.92908 1.08518 0.98676 1.20702 0.97248 0.98555 0.93596 1.20269 0.97230 1.07709 0.92734 1.18752 0.94189 0.94497 0.85511 1.41634 1.08215 1.56686 1.01741 1.19293 1.05125 1.28054 0.97233 0.88737 1.25252 0.96523 0.93858 0.99182 1.69886 1.36735 1.11593 1.26546 0.85977 0.78954 0.79184 0.81088 1.19154 1.20635 1.20226 1.19694 0.81832 0.80345 0.88781 1.90545 1.73500 1.49264 1.22075 0.90413 0.88630 0.88649 0.75038 0.88269 0.88333 0.89217 0.89112 0.91065 0.90433 0.89924 0.91257 0.90046 0.87930 0.87117 0.86885 0.86702 0.86333 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.39 36.01 0.37 -0.76 16 2 C 0.51 5.76 7.94 -10.98 -0.09 5.68 16 3 O -0.55 -8.49 17.10 5.55 0.09 -8.40 16 4 N -0.72 -7.94 5.53 -61.47 -0.34 -8.28 16 5 C 0.10 1.19 4.50 -5.20 -0.02 1.17 16 6 C 0.51 7.34 7.77 -10.99 -0.09 7.25 16 7 O -0.55 -9.02 15.07 5.55 0.08 -8.93 16 8 N -0.59 -8.97 2.97 -172.71 -0.51 -9.48 16 9 C 0.11 1.74 5.99 -3.67 -0.02 1.72 16 10 C -0.10 -1.59 4.96 -26.80 -0.13 -1.72 16 11 C -0.05 -0.88 0.67 -157.03 -0.10 -0.99 16 12 C -0.10 -1.58 4.94 -26.83 -0.13 -1.71 16 13 C 0.10 1.47 5.89 -3.70 -0.02 1.45 16 14 C -0.17 -3.07 4.99 -104.48 -0.52 -3.59 16 15 C -0.06 -0.90 10.03 -39.73 -0.40 -1.30 16 16 C -0.19 -2.71 10.07 -39.49 -0.40 -3.11 16 17 C -0.08 -1.26 10.02 -39.67 -0.40 -1.66 16 18 C -0.16 -2.93 9.79 -39.26 -0.38 -3.31 16 19 C 0.17 3.64 6.64 -83.64 -0.56 3.08 16 20 N -0.38 -9.15 2.81 -58.86 -0.17 -9.31 16 21 C -0.37 -9.57 9.52 -14.94 -0.14 -9.72 16 22 H 0.09 2.35 7.92 -52.49 -0.42 1.93 16 23 C 0.06 1.67 4.73 -17.49 -0.08 1.59 16 24 N -0.82 -22.08 11.30 55.49 0.63 -21.45 16 25 Si 0.92 20.20 29.60 -169.99 -5.03 15.17 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 29 C 0.50 11.61 5.71 -10.95 -0.06 11.55 16 30 O -0.48 -12.13 11.31 5.56 0.06 -12.07 16 31 H 0.08 0.37 7.91 -51.93 -0.41 -0.04 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.41 4.16 7.27 -40.82 -0.30 3.86 16 35 H 0.10 1.22 7.94 -51.93 -0.41 0.81 16 36 H 0.10 1.13 7.70 -51.92 -0.40 0.73 16 37 H 0.09 1.40 7.00 -51.92 -0.36 1.03 16 38 H 0.09 1.71 6.27 -51.93 -0.33 1.39 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 1.01 5.92 -51.93 -0.31 0.71 16 44 H 0.10 1.94 6.27 -51.93 -0.33 1.61 16 45 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 46 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 47 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 48 H 0.12 2.17 8.04 -52.48 -0.42 1.75 16 49 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 395.13 15.07 5.95 5.95 Total: -1.00 -32.26 395.13 -9.02 -41.28 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -6.62 Total: 9.89 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -3.18 Total: 5.64 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.39 Total: -48.53 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: 0.24 Total: -29.40 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.26 -9.02 -41.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096241409.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.360 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds